SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1992

Length: 2754 nt

UniGene Fasta

>sp_v3.0_unigene1992
GTGAAAAAACCAGTACCGCCCTTAGCCGACTGTCTTATTCCTTCACTTTTAATTGGATGGTATCAGCTGTCTGACAGCGGTCCGAGGTTGCAGGTTCGAGCTCTGGATCGGTGTTTATAGGTCTAAAGATGCCTGGCTTGGCGTCGATAGATCGAGACACAGTGTATCTTCCACATACTCGTAACCTTTCCAGGAGCTCTAATCCAATGTGCTACCAGGAGTCCCAAATGTATTTGTCACCTGAAGAGATAGCTCTTGCAGAAGAAAGCTTCTCAATGTATTGTAAGCCTGTTGAGCTGTACAACATCCTTCAGCACCGAGCTTCAAAACATCCTTTATTTCTTCAAAGAAGTTTAAGTTACAAAATTCAGGAAAAGCGACAAAGGCGAATCAAAATGACCATTAAATTTTCTGGACATGTGAGCGATGAAGTGCCAGGGAAAAACTTCTGGCCTCTATATGTGTTGTTGTCGAGTCCCATTCATAACTATTTAGAGGATTCCTCAGTTTATCGGTTGACTCGTGAACGCTTACTGAGAATGTCAACTCAACAGGGATGCAATGAACTATCTGCAGTTAGTTTTATATTACCTGAGATTGGGAAACTTTCAGTTGATGTAGATGCTCATAATCTTACACTATTATTTGTTAGTTGTGTGGACCATAAAATTGTGAGCTGTGGGAAGGCCTCATCGTCTCAGCTAGTTGAGTACACAGGACAAGTTCTGTGGGGCAAAGTGGCCTTGGGTTCACTATGTAGTTCTTGGCAGAAGTCCCCAAACTTGAGATTGGGGGAGAGAGTTGATATAGTTTATCCGGTGGATTTACACTCTAGTAACCTTGAGCATGATGTATTGGATGATGGGAAGTGCATAGTTTTGAGGACACCTACTAATATAAACGGTTTGAACTCAGTGACACGGTTGCAAGTTATAATATCAGCTCAGGAGGTGGGACCAAGAGACAAATCTCCATATGATTCTTATTCTTACAGCGATATCCCTTCATCTTCACGGCTGCGCATCATTCATTTGAGAGCTGGAAATGTCATTTTTAATTACAAATATCATAACAATAGGTTGCAGAAGACAGAAGTCACAGAAGATTTTTCCTGCCCATTTTGTTTGGTGCCTTGTGCCAGCTTCAAGGGTTTACGGCTGCATTTGAATTCTTCGCATGATCTATTCAATTTTGAGTTTTGGATTACTGAAGACTATCAGGCAGTAAATGTGTCTCTTAAGAATGAAATTTGGAGATATGAGGGAAACATTCCAGATGTTGATGGCAGTGATATACGTTTTAAAGCTTACTTTTTCCGGTCAAGGTCTTGTCCACTTAAGAGATGGCACATGGGGATGTGCAATACAATTTCAATACATCATCAAACTGAGAAGCATTCACCTGATTCAAGAAGGTTGGGACTTTCCCAAACGGCTTTGTCAAAGAATACTGCAGTGACTACCCTTGAGACCTCCACTGAAATTTTTCCAATTGGCGCCATTCCATCTAATGAACCCTCTTCGTTAAGTATTGTTTGTAGCCCATCTTCAGATAGGATAATCTCAGAAGGAAGAAATCATGGTGAGCAGGTGCAAGATGGTTACCTCCTGCAGGCATCACCTGCTAGGAAGGCTAATTGCCAGCTTGATAATGCAGTTGAAGGTGTTAATAATGAAGAGAGTAAGAAACTAGAAATGCTTGCCAATGGAGAGATATTATTGCCATGTGAAAGGCATCAAATAGAGAGCTTAGTGGTGGACCGTGCTCGAATTGCAGACTGTTTAGTGACTGGCATCCAAGGCCCTATGGCAAGTGGTCTATCTTTTTCTGCTACTCTGCCATCTGCAACTAATGAATGTGATCCTCAGACATGTACAACCAACCTAGTGCCACCTTCTATGCTTCGTTTTGAGAAAACAAGAAGATTGTCTGCTGAGAGAACTGAATCACGGAATCGTGCACTACTCCAAAAACGACAATTTTTTCATTCACACAGAGCACAGTTAATGGCCTTGGAGCAAGTATTATCCGATAGAGATAGTGAAGATGAAGTTGATGATGACATCGCAGACTTTGAAGACCGGAGGATGCTTGATGATTTTGTGGATGTGACAACTCATGAGAAACAACTCATGCATCTGTGGAATTCATTTGTTAGAAAGCAACGCGTGCTAGCGGATGGCCATATCCCCTGGGCATGTGAGGCATTTTCAAAGCTACATGGTCGTGATCTTTCTCAAAGAAAGGCTCTCCTACGGTGTTGGAGGTTATTTATGGTCAAACTTTGGAATCACAATCTTCTTGATGCGCCCACCATGGACCGTTGCAACTTGATCTTGGAGAACTGTAATAATAGTCAATAGCGAAATCGAACAATGTCTAGCTTGTTTTTATTTGCGCAATGCCCTTTTTGCAATAACTCAACACGTCATTTTTCTACCATTCTTGAGAAGTAGTCTGCTTAATATGCTTTGATTAATCTCTTGGCTTTATTTCTACATTGAATGAAATGCTGTAAAATTTCGCTTGGGCTTCGACATATAATCATTGACAATTCTTTTGACTGGTTTTGAAGTGCCTATATAGCAGGCGCTGTCTCAAAAATTGTATATTTCTTATTAGTTGTAATTGATCAGGATCCAATTTTTCTATAATGTATCCATTGGGTGGAATATGATAGCTTCAGCTGACTTAAATATTGAAGCAGGTTGAAGATGGGGTTATATTTTAGAGATTAATCAATTCCTTTTACAC

Ace file of the UniGene sp_v3.0_unigene1992

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Embryonic flower 2 n=1 Tax=Yucca filamentosa RepID=Q1W6L0_YUCFI	-	-	0.0	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Sma3	Embryonic flower 2	-	-	2.227e-24	-

Source	Gene names
Sma3	AT4g16810; AT4g16850; At2g35670; At4g16810; At4g16845; At5g51230/At5g51240; At5g51240; EMF2; FCAALL.23; FIS2; GSVIVT00004611001; GSVIVT00005149001; GSVIVT00008025001; GSVIVT00008404001; GSVIVT00012659001; GSVIVT00014221001; GSVIVT00014222001; GSVIVT000142

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	DNA methylation	GO:0006306	Biological Process	-
Sma3	regulation of gene expression by genetic imprinting	GO:0006349	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	negative regulation of flower development	GO:0009910	Biological Process	-
Sma3	vernalization response	GO:0010048	Biological Process	-
Sma3	cell differentiation	GO:0030154	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G51230.1	EMF2, VEF2, CYR1, AtEMF2 VEFS-Box of polycomb protein chr5:20824153-20829344 FORWARD LENGTH=631	0.0	45%
RefSeq	Arabidopsis thaliana	NP_851168.1	polycomb group protein EMBRYONIC FLOWER 2 [Arabidopsis thaliana]	0.0	45%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A7X6

Fln msg: your sequence is longer than subject: 745 - 118

Fln protein: MPGLASIDRDTVYLPHTRNLSRSSNPMCYQESQMYLSPEEIALAEESFSMYCKPVELYNILQHRASKHPLFLQRSLSYKIQEKRQRRIKMTIKFSGHVSDEVPGKNFWPLYVLLSSPIHNYLEDSSVYRLTRERLLRMSTQQGCNELSAVSFILPEIGKLSVDVDAHNLTLLFVSCVDHKIVSCGKASSSQLVEYTGQVLWGKVALGSLCSSWQKSPNLRLGERVDIVYPVDLHSSNLEHDVLDDGKCIVLRTPTNINGLNSVTRLQVIISAQEVGPRDKSPYDSYSYSDIPSSSRLRIIHLRAGNVIFNYKYHNNRLQKTEVTEDFSCPFCLVPCASFKGLRLHLNSSHDLFNFEFWITEDYQAVNVSLKNEIWRYEGNIPDVDGSDIRFKAYFFRSRSCPLKRWHMGMCNTISIHHQTEKHSPDSRRLGLSQTALSKNTAVTTLETSTEIFPIGAIPSNEPSSLSIVCSPSSDRIISEGRNHGEQVQDGYLLQASPARKANCQLDNAVEGVNNEESKKLEMLANGEILLPCERHQIESLVVDRARIADCLVTGIQGPMASGLSFSATLPSATNECDPQTCTTNLVPPSMLRFEKTRRLSAERTESRNRALLQKRQFFHSHRAQLMALEQVLSDRDSEDEVDDDIADFEDRRMLDDFVDVTTHEKQLMHLWNSFVRKQRVLADGHIPWACEAFSKLHGRDLSQRKALLRCWRLFMVKLWNHNLLDAPTMDRCNLILENCNNSQ*

Protein Length: 746

Fln nts: GTGAAAAAACCAGTACCGCCCTTAGCCGACTGTCTTATTCCTTCACTTTTAATTGGATGGTATCAGCTGTCTGACAGCGGTCCGAGGTTGCAGGTTCGAGCTCTGGATCGGTGTTTATAGGTCTAAAG_-_ATGCCTGGCTTGGCGTCGATAGATCGAGACACAGTGTATCTTCCACATACTCGTAACCTTTCCAGGAGCTCTAATCCAATGTGCTACCAGGAGTCCCAAATGTATTTGTCACCTGAAGAGATAGCTCTTGCAGAAGAAAGCTTCTCAATGTATTGTAAGCCTGTTGAGCTGTACAACATCCTTCAGCACCGAGCTTCAAAACATCCTTTATTTCTTCAAAGAAGTTTAAGTTACAAAATTCAGGAAAAGCGACAAAGGCGAATCAAAATGACCATTAAATTTTCTGGACATGTGAGCGATGAAGTGCCAGGGAAAAACTTCTGGCCTCTATATGTGTTGTTGTCGAGTCCCATTCATAACTATTTAGAGGATTCCTCAGTTTATCGGTTGACTCGTGAACGCTTACTGAGAATGTCAACTCAACAGGGATGCAATGAACTATCTGCAGTTAGTTTTATATTACCTGAGATTGGGAAACTTTCAGTTGATGTAGATGCTCATAATCTTACACTATTATTTGTTAGTTGTGTGGACCATAAAATTGTGAGCTGTGGGAAGGCCTCATCGTCTCAGCTAGTTGAGTACACAGGACAAGTTCTGTGGGGCAAAGTGGCCTTGGGTTCACTATGTAGTTCTTGGCAGAAGTCCCCAAACTTGAGATTGGGGGAGAGAGTTGATATAGTTTATCCGGTGGATTTACACTCTAGTAACCTTGAGCATGATGTATTGGATGATGGGAAGTGCATAGTTTTGAGGACACCTACTAATATAAACGGTTTGAACTCAGTGACACGGTTGCAAGTTATAATATCAGCTCAGGAGGTGGGACCAAGAGACAAATCTCCATATGATTCTTATTCTTACAGCGATATCCCTTCATCTTCACGGCTGCGCATCATTCATTTGAGAGCTGGAAATGTCATTTTTAATTACAAATATCATAACAATAGGTTGCAGAAGACAGAAGTCACAGAAGATTTTTCCTGCCCATTTTGTTTGGTGCCTTGTGCCAGCTTCAAGGGTTTACGGCTGCATTTGAATTCTTCGCATGATCTATTCAATTTTGAGTTTTGGATTACTGAAGACTATCAGGCAGTAAATGTGTCTCTTAAGAATGAAATTTGGAGATATGAGGGAAACATTCCAGATGTTGATGGCAGTGATATACGTTTTAAAGCTTACTTTTTCCGGTCAAGGTCTTGTCCACTTAAGAGATGGCACATGGGGATGTGCAATACAATTTCAATACATCATCAAACTGAGAAGCATTCACCTGATTCAAGAAGGTTGGGACTTTCCCAAACGGCTTTGTCAAAGAATACTGCAGTGACTACCCTTGAGACCTCCACTGAAATTTTTCCAATTGGCGCCATTCCATCTAATGAACCCTCTTCGTTAAGTATTGTTTGTAGCCCATCTTCAGATAGGATAATCTCAGAAGGAAGAAATCATGGTGAGCAGGTGCAAGATGGTTACCTCCTGCAGGCATCACCTGCTAGGAAGGCTAATTGCCAGCTTGATAATGCAGTTGAAGGTGTTAATAATGAAGAGAGTAAGAAACTAGAAATGCTTGCCAATGGAGAGATATTATTGCCATGTGAAAGGCATCAAATAGAGAGCTTAGTGGTGGACCGTGCTCGAATTGCAGACTGTTTAGTGACTGGCATCCAAGGCCCTATGGCAAGTGGTCTATCTTTTTCTGCTACTCTGCCATCTGCAACTAATGAATGTGATCCTCAGACATGTACAACCAACCTAGTGCCACCTTCTATGCTTCGTTTTGAGAAAACAAGAAGATTGTCTGCTGAGAGAACTGAATCACGGAATCGTGCACTACTCCAAAAACGACAATTTTTTCATTCACACAGAGCACAGTTAATGGCCTTGGAGCAAGTATTATCCGATAGAGATAGTGAAGATGAAGTTGATGATGACATCGCAGACTTTGAAGACCGGAGGATGCTTGATGATTTTGTGGATGTGACAACTCATGAGAAACAACTCATGCATCTGTGGAATTCATTTGTTAGAAAGCAACGCGTGCTAGCGGATGGCCATATCCCCTGGGCATGTGAGGCATTTTCAAAGCTACATGGTCGTGATCTTTCTCAAAGAAAGGCTCTCCTACGGTGTTGGAGGTTATTTATGGTCAAACTTTGGAATCACAATCTTCTTGATGCGCCCACCATGGACCGTTGCAACTTGATCTTGGAGAACTGTAATAATAGTCAATAG___CGAAATCGAACAATGTCTAGCTTGTTTTTATTTGCGCAATGCCCTTTTTGCAATAACTCAACACGTCATTTTTCTACCATTCTTGAGAAGTAGTCTGCTTAATATGCTTTGATTAATCTCTTGGCTTTATTTCTACATTGAATGAAATGCTGTAAAATTTCGCTTGGGCTTCGACATATAATCATTGACAATTCTTTTGACTGGTTTTGAAGTGCCTATATAGCAGGCGCTGTCTCAAAAATTGTATATTTCTTATTAGTTGTAATTGATCAGGATCCAATTTTTCTATAATGTATCCATTGGGTGGAATATGATAGCTTCAGCTGACTTAAATATTGAAGCAGGTTGAAGATGGGGTTATATTTTAGAGATTAATCAATTCCTTTTACAC

Fln Alignment:

Contig1992___MALEQVLSXXXXXXXXXXXXXXXXXXXMLDDFVDVTTHEKQLMHLWNSFVRKQRVLADGHIPWACEAFSKLHGRDLSQRKALLRCWRLFMVKLWNHNLLDAPTMDRCNLILENCNNSQ
D5A7X6______________MALEQVLSDRDSEDEVDDDIADFEDRRMLDDFVDVTTHEKQLMHLWNSFVRKQRVLADGHIPWACEAFSKLHGRNLSQRKALLWCWRLFMVKLWNHNLLDAATMNRCNLILENCNNNQ

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
1252		20		80	0.995493
1387	83	16			0.994512
1389		83		16	0.994512
1953		80		20	0.995493
1956	80		20		0.995493
1957	80		20		0.995493
2039	85		14		0.993533
2142		90	10		0.90298
2143			10	90	0.90298
2186		88		11	0.923564
2390			64	7	1.0
2391			35	57	1.0
2647	20			80	0.995493
2652		60		40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain