SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1991

Length: 2194 nt

UniGene Fasta

>sp_v3.0_unigene1991
GGAGCGCGTGGGCTTGTTTTTGTTCCTTCCTTGAACCGTTCCACACTCTCCCTCCTCTTCGATTCCCGCCGTCTTCCAACATCGACGAAGAAGTGCGATCGAGAAATAAAAGCCGGGGAACGGCCGGTGACGTGAAGGGTAGTTGCAGTGGTTAATTCGACAACATCTTTGCCTGTTAGAAAGGCGCGGGGCTTATCGGAAGCCACACCAAACCAAATCAGAAATAATGGGTAGGGCTCCCTGCTGCGAAAAGGTTGGGCTCAAGAAGGGTCCCTGGACGCCTGAAGAAGATCAGAAACTCGTTACTTACATACAGGAGCACGGCCATGGCAGCTGGAGGGCTCTGCCGCAGAAAGCTGGGTTGCTGAGATGCGGGAAGAGCTGCAGATTGCGCTGGGCTAACTATCTAAGGCCAGATATCAAGCGGGGGAAGTTCACTGTGCAGGAAGAGCAGACTATTATTCAACTTCATGCGCTACTGGGAAACAGGTGGTCCGCCATTGCTACTCACCTTCCCAAGCGAACCGACAACGAAATCAAGAACTACTGGAATACCCACCTGAAGAAGCGCTTGCTGCAGATGGGAATCGACCCCGTGACGCACAAGCCCAAGTCCGAATCGATTATGGCACCTGGTGTTCAGTCGTCCAATGGGTCCTCGAATCTGAGCCATATGGCGCAGTGGGAGAGCGCGCGCCTGGAAGCCGAATCGAGGCTGGCGCGCGAGTCCAAGCTCAGGGCCAGGGGCCTCTGGTCTGCCCAGTTGAGAAACGTTAATGCGAGCTCAGATTTATTCAGCCGATTGCGGAGAGCCAGTCCAGGGTTCGAATCCGATAGAGAGGAATCAAAGATTCCCGGGTTGAGCTCTGCTCTGGGCTTTGATTGTATGAAAATGACACAGAAATGGGACAAGTTCCAGGATTTGAGGTCGGGAACCAAGTTAGACCAGTGCAATTTGTCAGCCTTGGGAGGTTCACTGGGTAGTTATAGTCCACTGGAGAATGAGAACCGAGCTAGTAAGACGAGCTATTTGGGCCTTCTGCAGCAAGCTATGTGCCCTTCTGCTCAGGGCAGCAAAATTCTGTTTAATGAGGCCAAGAAGTTGGTCGAGAGCCAAAAGAACCGACAGACTAATGCAACGGCCACACTTCACTGGTCTACTTATCACATAGACCAGTCTGAGAATTGTGATGAGAAGAAACCGACCATAGTTTCTGAGAAAGCTCACAGCGATGATCAGAGCTGCAGCCATGAAGAAAATGTCGAGCCAGCCGATAGCCATCACGAGCTTTTGCTGTCCTCTGTTATGTTAAATGACGGGAATTGCTCCAGTGCGAGGTCAGACGTGTCTGAGCTCACCAAAACCGAACAGGGAGCTGATGCCAGTTATGATAAAGTCGGAAATTCTGATAATATCCTCAGCGAGTTTCAACATATTCATTATGATGAAATTAGCAGCAGTGGTGGCCTCAAGTCTGGTTCGAGCTACGATGGTTTTAATGCTGATATGCTTTTAGATCTGGTAGTAACTCCCCCTAATGGCTATTCTACCGCTGGATGTGGCGATAATCGATCCCTGAGCGGACTGTCTGTTGACGATAATAAAGAATACTGGAGCAATATGTTCAGTGTCTGTAATTCTCTTCCTAATGGCAACCACAGTGGAGTTCAGGGCATCTTCTAGGGTGATTTTATTGTCTAAAATTAGGCCGAGATCGAATGAAGCCGTGCTCAGTTTTGTAGACGAGAATTTCGATATTTTGTAACACAGTCGTTTGGTAAACTGTGAATGGTATCCATATCTTCATTCTCGGAATTGTGCGCTGCGCGCTGTGTGTTGTGTGCGTTTTTGGCACACTGTCTGTAATTGCAAACTCTGTTCAGCATCGTAGCAGACATGAAGTGTTTCTAACTGAAAGGGTGGAATTTAATCCCTTATAAGTTAAAGCTTGAATCCATATATTTGTTGGGAATAATTAAATTCTATTAGCATGCTGGAATATTTTATATTCTATGTCAGTTTAGACTTGAATGTCTGTGAAATCTCAACTCTTTGAATTGTGTTGGATTTCATAGAAACCCTATAAATGGTTTTGTAATTAAATTGGATTGTTTGAAATTTACTGATTACTTGGGTTTTGTAATTATATAAAATAGCCTGAAATTTACTGATTAATGAATTATTGTCCAGAGA

Ace file of the UniGene sp_v3.0_unigene1991

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transcription factor DcMYB2 [Daucus carota]	-	-	0.0	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Sma3	MYB transcription factor	-	-	3.78351e-44	-

Source	Gene names
Sma3	117M18_17; 23.t00069; 40.t00054; 80A08_26; AT4g21440; ATR1; At1g18570; At1g18570/F25I16_4; At1g22640; At1g34670; At1g66230; At1g74080; At2g16720; At3g01140; At3g02940; At3g23250; At3g28910; At3g61250; At4g05100; At4g09460; At4g17785; At4g21440; At4g28110;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	transcription activator activity	GO:0016563	Molecular Function	-
Sma3	tryptophan biosynthetic process	GO:0000162	Biological Process	-
Sma3	cell morphogenesis	GO:0000902	Biological Process	-
Sma3	defense response to insect	GO:0002213	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	response to ethylene stimulus	GO:0009723	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	response to gibberellin stimulus	GO:0009739	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	indole glucosinolate biosynthetic process	GO:0009759	Biological Process	-
Sma3	cinnamic acid biosynthetic process	GO:0009800	Biological Process	-
Sma3	negative regulation of metabolic process	GO:0009892	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3	response to UV-B	GO:0010224	Biological Process	-
Sma3	cellular response to sulfur starvation	GO:0010438	Biological Process	-
Sma3	regulation of glucosinolate biosynthetic process	GO:0010439	Biological Process	-
Sma3	cell growth	GO:0016049	Biological Process	-
Sma3		GO:0016481	Biological Process	-
Sma3	cuticle development	GO:0042335	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G15310.1	ATMYB16, ATMIXTA, MYB16 myb domain protein 16 chr5:4974894-4976106 FORWARD LENGTH=326	81%
RefSeq	Arabidopsis thaliana	NP_001078589.1	myb domain protein 16 [Arabidopsis thaliana]	81%
RefSeq	Populus trichocarpa	XP_002323871.1	predicted protein [Populus trichocarpa]	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P0V4

Fln msg: your sequence is longer than subject: 486 - 330

Fln protein: MGRAPCCEKVGLKKGPWTPEEDQKLVTYIQEHGHGSWRALPQKAGLLRCGKSCRLRWANYLRPDIKRGKFTVQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLLQMGIDPVTHKPKSESIMAPGVQSSNGSSNLSHMAQWESARLEAESRLARESKLRARGLWSAQLRNVNASSDLFSRLRRASPGFESDREESKIPGLSSALGFDCMKMTQKWDKFQDLRSGTKLDQCNLSALGGSLGSYSPLENENRASKTSYLGLLQQAMCPSAQGSKILFNEAKKLVESQKNRQTNATATLHWSTYHIDQSENCDEKKPTIVSEKAHSDDQSCSHEENVEPADSHHELLLSSVMLNDGNCSSARSDVSELTKTEQGADASYDKVGNSDNILSEFQHIHYDEISSSGGLKSGSSYDGFNADMLLDLVVTPPNGYSTAGCGDNRSLSGLSVDDNKEYWSNMFSVCNSLPNGNHSGVQGIF*

Protein Length: 487

Fln nts: GGAGCGCGTGGGCTTGTTTTTGTTCCTTCCTTGAACCGTTCCACACTCTCCCTCCTCTTCGATTCCCGCCGTCTTCCAACATCGACGAAGAAGTGCGATCGAGAAATAAAAGCCGGGGAACGGCCGGTGACGTGAAGGGTAGTTGCAGTGGTTAATTCGACAACATCTTTGCCTGTTAGAAAGGCGCGGGGCTTATCGGAAGCCACACCAAACCAAATCAGAAATA_-_ATGGGTAGGGCTCCCTGCTGCGAAAAGGTTGGGCTCAAGAAGGGTCCCTGGACGCCTGAAGAAGATCAGAAACTCGTTACTTACATACAGGAGCACGGCCATGGCAGCTGGAGGGCTCTGCCGCAGAAAGCTGGGTTGCTGAGATGCGGGAAGAGCTGCAGATTGCGCTGGGCTAACTATCTAAGGCCAGATATCAAGCGGGGGAAGTTCACTGTGCAGGAAGAGCAGACTATTATTCAACTTCATGCGCTACTGGGAAACAGGTGGTCCGCCATTGCTACTCACCTTCCCAAGCGAACCGACAACGAAATCAAGAACTACTGGAATACCCACCTGAAGAAGCGCTTGCTGCAGATGGGAATCGACCCCGTGACGCACAAGCCCAAGTCCGAATCGATTATGGCACCTGGTGTTCAGTCGTCCAATGGGTCCTCGAATCTGAGCCATATGGCGCAGTGGGAGAGCGCGCGCCTGGAAGCCGAATCGAGGCTGGCGCGCGAGTCCAAGCTCAGGGCCAGGGGCCTCTGGTCTGCCCAGTTGAGAAACGTTAATGCGAGCTCAGATTTATTCAGCCGATTGCGGAGAGCCAGTCCAGGGTTCGAATCCGATAGAGAGGAATCAAAGATTCCCGGGTTGAGCTCTGCTCTGGGCTTTGATTGTATGAAAATGACACAGAAATGGGACAAGTTCCAGGATTTGAGGTCGGGAACCAAGTTAGACCAGTGCAATTTGTCAGCCTTGGGAGGTTCACTGGGTAGTTATAGTCCACTGGAGAATGAGAACCGAGCTAGTAAGACGAGCTATTTGGGCCTTCTGCAGCAAGCTATGTGCCCTTCTGCTCAGGGCAGCAAAATTCTGTTTAATGAGGCCAAGAAGTTGGTCGAGAGCCAAAAGAACCGACAGACTAATGCAACGGCCACACTTCACTGGTCTACTTATCACATAGACCAGTCTGAGAATTGTGATGAGAAGAAACCGACCATAGTTTCTGAGAAAGCTCACAGCGATGATCAGAGCTGCAGCCATGAAGAAAATGTCGAGCCAGCCGATAGCCATCACGAGCTTTTGCTGTCCTCTGTTATGTTAAATGACGGGAATTGCTCCAGTGCGAGGTCAGACGTGTCTGAGCTCACCAAAACCGAACAGGGAGCTGATGCCAGTTATGATAAAGTCGGAAATTCTGATAATATCCTCAGCGAGTTTCAACATATTCATTATGATGAAATTAGCAGCAGTGGTGGCCTCAAGTCTGGTTCGAGCTACGATGGTTTTAATGCTGATATGCTTTTAGATCTGGTAGTAACTCCCCCTAATGGCTATTCTACCGCTGGATGTGGCGATAATCGATCCCTGAGCGGACTGTCTGTTGACGATAATAAAGAATACTGGAGCAATATGTTCAGTGTCTGTAATTCTCTTCCTAATGGCAACCACAGTGGAGTTCAGGGCATCTTCTAG___GGTGATTTTATTGTCTAAAATTAGGCCGAGATCGAATGAAGCCGTGCTCAGTTTTGTAGACGAGAATTTCGATATTTTGTAACACAGTCGTTTGGTAAACTGTGAATGGTATCCATATCTTCATTCTCGGAATTGTGCGCTGCGCGCTGTGTGTTGTGTGCGTTTTTGGCACACTGTCTGTAATTGCAAACTCTGTTCAGCATCGTAGCAGACATGAAGTGTTTCTAACTGAAAGGGTGGAATTTAATCCCTTATAAGTTAAAGCTTGAATCCATATATTTGTTGGGAATAATTAAATTCTATTAGCATGCTGGAATATTTTATATTCTATGTCAGTTTAGACTTGAATGTCTGTGAAATCTCAACTCTTTGAATTGTGTTGGATTTCATAGAAACCCTATAAATGGTTTTGTAATTAAATTGGATTGTTTGAAATTTACTGATTACTTGGGTTTTGTAATTATATAAAATAGCCTGAAATTTACTGATTAATGAATTATTGTCCAGAGA

Fln Alignment:

Contig1991___MGRAPCCEKVGLKKGPWTPEEDQKLVTYIQEHGHGSWRALPQKAGLLRCGKSCRLRWANYLRPDIKRGKFTVQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLLQMGIDPVTHKPKSESIMAPGVQSSNGSSNLSHMAQWESARLEAESRLARESKLRARGLWSAQLRNVNASSDLFSRLRRASPGFESDREESKIPGLSSALGFDCMKMTQKWDKFQDLRSGTKLDQCN--XXXXXXXXXXYSPLEN---ENRASKTSYLGLLQQAMCPSAQGSKILFNEAKKLVESQKNRQTNATATLHWSTYHIDQS-ENCDEKK
A9P0V4______________MGRAPCCEKVGLKKGPWTPEEDQKLVAYIQEHGHGSWRALPQKAGLLRCGKSCRLRWANYLRPDIKRGKFSAQEEQTIIQLHALLGNRWSTIATHLPKRTDNEIKNYWNTHLKKRLLQMGIDPVTHKPKSESIMAVGRQSSNGSSNLSHMAQWESARLEAESRLARESKLRAKGLWSASMRNANVSSDIFSRLRSDSQGFDSDKEELKTRGLNSTGGFECMKITQKWDKSQDLRLGAKSDQCNSSALGGPFRGYKYNPLENGQSENRASKTSYVSLLQQAMCPSAQGSKILYNEAKKLVENQKNRQANAAAT----AYNVHQSHENCGESK

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
283		14		85	0.993533
524	83		16		0.994512
1558	44	55			1.0
1563	11		88		0.923564
1579	11		88		0.923564
1604	85			14	0.993533
1621		20		80	0.995493
1630		11		88	0.923564
1637	88		11		0.923564
1639		11		88	0.923564
1645			11	88	0.923564
1646		88	11		0.923564
1649	87		12		0.992554
1652		12	87		0.992554
1653	12		87		0.992554
1655	87			12	0.992554
1658	12	87			0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain