SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1989

Length: 2337 nt

UniGene Fasta

>sp_v3.0_unigene1989
TGAGAGATACTCTAACTTCGATGATCCTGTTATTCCAAAATTTCATTATGGTTCACATTATTCAAGTGCTGGAACGGTCCTTTACTACCTCACTCGAGTGGAACCATTTACAACACTCTCAATTCAGCTACAAGGTGGCAAGTTTGATCATGCTGATCGAATGTTTTCAGATTTAGGGGCAACTTGGAATGGTGTTTTAGAGGATATGAGTGATGTGAAGGAATTGGTTCCAGAACTATTCTATCTTCCAGAAGTTCTCACAAATGATAATGGTATAGATCTAGGGACAACACAGCTGGGAGAGAAGATTGATGTTGTCAAGATGCCTCCTTGGGCTGACAGTCCCATTGACTTCATTCACAAACATTGGGCAGCGCTTGAGAGTGAACATGTCTCTGCACATCTTAATGAGTGGATTGACCTCATATTTGGATATAAACAAAGAGGAAAAGAAGCTGTTGCTGCTAACAATGTTTTCTTTTACATGACATATGAAGGGGCAGTTGACATTGATAAGATTTCTGATCCAGTTCTTCGTCATGCCACACAAGATCAGATTGCTTACTTTGGGCAGACTCCATCTCAGCTTTTATCTTTCCCACATGTGAAAAGGCGTCCTTTAGCTGACGTTCTCCACCTGCAGACCATATTTAGGAACCCCACAGAAATAAAATCCTATGCAATTCCAAACCCAGAACGTTGCAATGTTCCAGCTTCTGCAATTTCTGCTTCTGCAGATTCAGTTGTCATAGTTGATACAAATTTGCCAGGAGCTCATGTTGCATTACACAGATGGCAGCCAAATACCCCAGATGGGCATGGGATGCCTTTCCTAATTTCAGCATGGGAAAGCTGCTGCGAGTTCTAGCGGTGGTTCTTTCATGCGTATCTTCAAAGGTTCTGGTATTGAAGATTGGCATTATCCTCGTTGCATAGCCCTTCCTGCTACAGGAATCAGAAGTCCATCCATTGTTGCAATCACTTCAGACATGCACATTATCACAGGTGGACATGCCGACAATACTGTGAAGTTGATCTTAGCTGAGAATGCAAAAACACTGGAGAGTGCAGCTGGCCACTGTGCTCCAGTTACCTGTCTTGCAATTTCTCCAGATGGCAGCACCCTTGTGACAGGATCACGAGATGCTACAGCAATATTATGGCGGTTGCATAGAAGTTCTGACAAGGTTTCTTATGGTAGACTGGAGCCATCTGTTTTGTCTCCAGCTGCAGCAGTCGGTTCTTCTAACTCTGGAAGTACCAGTGCAAATATAAATATGGATGGGAGGAAAAGGTACATTGAAGGTCCCTTGCATGTCCTCCGAGGTCATATTGGTGAATTAACTTGCTGTTGCATAAATGCCGACCTTGATCTAGCTGTTTCCTGCTCACGTCTTGGTGGTGTGTTACTGCATTCAATTTCTAGGGGACGTCTGATAAGGCGGTTACCAATAAAGAGAGTAGACACTGTAGCCCTCTCTGCAGAAGGGATGATAATTATTTGGGATAAGTCTTCTCAACAGCTTAGAACTTTCACCCTTAATGGTATTTCAGTTGCTAGAAGAGTTCTTTCCCCATTTCCAGGAGATATCACATGTATTGAAATCTCAAAAGATGGAAAGCATGCATTATTTGGTACAAGTGCATATTCAGTCTTCTCAGATGAAAAAATATCAATGTCCAGAGAGGGAAGAGATGATGATTCAACACCACAATGTTCAACTGAAACTGTGGATGGGAGTGAAGAGGATCGAACATCTATTGTTTCTCTCCCTTCTATTTGTCTTCTCGATTTGCATACATTGAAGATTGTACATGTTCTGGAGCTAAATCAAGGAGAAGATGTCACAGCTTTGGCTCTAAACAAGGATAATACCAATTTAGTTGTCTCCCTTCGCAGCAAGCAGCTGCTTGTTTACACAGATCCGATGTTGAGTGTCAAGGTTGTGGATCAAATGCTTCGGCTTGGTTGGCAGGGTGAAGGTCTTACGCCTCTTATAACTAAGTGACCAGTTCATTTGGATGTGTCTCATCGATGAAGTTCCTCTTGCAAGTTCTTTTTTTCGTTATGTTTGTAGGATTCTCACTTCCATTTTGTGTTTCTGTTTGGAAAGTGAGATTAAAGATAGCCATGTTGGCTATGGTGCATTTTTCCCCTATCCATTTGTTCATTTTCTTCTCTGTAATTCATGAATTCGTTTTGGTTCTTGCAATGCAGGCTCTGTTAACATTGTACAGTAATTCTGGGCTTATATTAAAGAGCTCGAAAGTGTATTGTATGCTACTTTACCCAGCATGGGTGATTTGTAGAGTTCAATATCAATCATTTTTTTCGAC

Ace file of the UniGene sp_v3.0_unigene1989

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nucleotide binding protein, putative n=1 Tax=Ricinus communis RepID=B9RDF9_RICCO	-	-	0.0	76%
FL-Next	sp=Outer row dynein assembly protein 16; Chlamydomonas reinhardtii (Chlamydomonas smithii).	-	-	0.0	24%

Source	Gene names
Sma3	AT4g02660; At2g45540; F10O3.12; F16M22.8; GSVIVT00015086001; GSVIVT00023806001; GSVIVT00026270001; LOC_Os03g53280; MICPUCDRAFT_57302; MICPUCDRAFT_69523; MICPUCDRAFT_902; MICPUN_55931; MICPUN_69010; MICPUN_82791; OJ1001_D02.16; OJ9003_G05.37; OSJNBb0012E24

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, FYVE-type	IPR000306	-	-
Sma3	BEACH domain	IPR000409	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	Zinc finger, FYVE-related	IPR017455	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-
Sma3	Ribosomal protein S14, conserved site	IPR018271	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G45540.2	WD-40 repeat family protein / beige-related chr2:18757881-18772229 REVERSE LENGTH=3001	81%
RefSeq	Arabidopsis thaliana	NP_001189752.1	beige-related and WD-40 repeat-containing protein [Arabidopsis thaliana]	81%
RefSeq	Populus trichocarpa	XP_002320742.1	predicted protein, partial [Populus trichocarpa]	83%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: sp_plants

Fln subject: Q3Y8L7

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 376 - 446

Fln protein: MRIFKGSGIEDWHYPRCIALPATGIRSPSIVAITSDMHIITGGHADNTVKLILAENAKTLESAAGHCAPVTCLAISPDGSTLVTGSRDATAILWRLHRSSDKVSYGRLEPSVLSPAAAVGSSNSGSTSANINMDGRKRYIEGPLHVLRGHIGELTCCCINADLDLAVSCSRLGGVLLHSISRGRLIRRLPIKRVDTVALSAEGMIIIWDKSSQQLRTFTLNGISVARRVLSPFPGDITCIEISKDGKHALFGTSAYSVFSDEKISMSREGRDDDSTPQCSTETVDGSEEDRTSIVSLPSICLLDLHTLKIVHVLELNQGEDVTALALNKDNTNLVVSLRSKQLLVYTDPMLSVKVVDQMLRLGWQGEGLTPLITK*

Protein Length: 377

Fln nts: TGAGAGATACTCTAACTTCGATGATCCTGTTATTCCAAAATTTCATTATGGTTCACATTATTCAAGTGCTGGAACGGTCCTTTACTACCTCACTCGAGTGGAACCATTTACAACACTCTCAATTCAGCTACAAGGTGGCAAGTTTGATCATGCTGATCGAATGTTTTCAGATTTAGGGGCAACTTGGAATGGTGTTTTAGAGGATATGAGTGATGTGAAGGAATTGGTTCCAGAACTATTCTATCTTCCAGAAGTTCTCACAAATGATAATGGTATAGATCTAGGGACAACACAGCTGGGAGAGAAGATTGATGTTGTCAAGATGCCTCCTTGGGCTGACAGTCCCATTGACTTCATTCACAAACATTGGGCAGCGCTTGAGAGTGAACATGTCTCTGCACATCTTAATGAGTGGATTGACCTCATATTTGGATATAAACAAAGAGGAAAAGAAGCTGTTGCTGCTAACAATGTTTTCTTTTACATGACATATGAAGGGGCAGTTGACATTGATAAGATTTCTGATCCAGTTCTTCGTCATGCCACACAAGATCAGATTGCTTACTTTGGGCAGACTCCATCTCAGCTTTTATCTTTCCCACATGTGAAAAGGCGTCCTTTAGCTGACGTTCTCCACCTGCAGACCATATTTAGGAACCCCACAGAAATAAAATCCTATGCAATTCCAAACCCAGAACGTTGCAATGTTCCAGCTTCTGCAATTTCTGCTTCTGCAGATTCAGTTGTCATAGTTGATACAAATTTGCCAGGAGCTCATGTTGCATTACACAGATGGCAGCCAAATACCCCAGATGGGCATGGGATGCCTTTCCTAATTTCAGCATGGGAAAGCTGCTGCGAGTTCTAGCGGTGGTTCTTTC_-_ATGCGTATCTTCAAAGGTTCTGGTATTGAAGATTGGCATTATCCTCGTTGCATAGCCCTTCCTGCTACAGGAATCAGAAGTCCATCCATTGTTGCAATCACTTCAGACATGCACATTATCACAGGTGGACATGCCGACAATACTGTGAAGTTGATCTTAGCTGAGAATGCAAAAACACTGGAGAGTGCAGCTGGCCACTGTGCTCCAGTTACCTGTCTTGCAATTTCTCCAGATGGCAGCACCCTTGTGACAGGATCACGAGATGCTACAGCAATATTATGGCGGTTGCATAGAAGTTCTGACAAGGTTTCTTATGGTAGACTGGAGCCATCTGTTTTGTCTCCAGCTGCAGCAGTCGGTTCTTCTAACTCTGGAAGTACCAGTGCAAATATAAATATGGATGGGAGGAAAAGGTACATTGAAGGTCCCTTGCATGTCCTCCGAGGTCATATTGGTGAATTAACTTGCTGTTGCATAAATGCCGACCTTGATCTAGCTGTTTCCTGCTCACGTCTTGGTGGTGTGTTACTGCATTCAATTTCTAGGGGACGTCTGATAAGGCGGTTACCAATAAAGAGAGTAGACACTGTAGCCCTCTCTGCAGAAGGGATGATAATTATTTGGGATAAGTCTTCTCAACAGCTTAGAACTTTCACCCTTAATGGTATTTCAGTTGCTAGAAGAGTTCTTTCCCCATTTCCAGGAGATATCACATGTATTGAAATCTCAAAAGATGGAAAGCATGCATTATTTGGTACAAGTGCATATTCAGTCTTCTCAGATGAAAAAATATCAATGTCCAGAGAGGGAAGAGATGATGATTCAACACCACAATGTTCAACTGAAACTGTGGATGGGAGTGAAGAGGATCGAACATCTATTGTTTCTCTCCCTTCTATTTGTCTTCTCGATTTGCATACATTGAAGATTGTACATGTTCTGGAGCTAAATCAAGGAGAAGATGTCACAGCTTTGGCTCTAAACAAGGATAATACCAATTTAGTTGTCTCCCTTCGCAGCAAGCAGCTGCTTGTTTACACAGATCCGATGTTGAGTGTCAAGGTTGTGGATCAAATGCTTCGGCTTGGTTGGCAGGGTGAAGGTCTTACGCCTCTTATAACTAAGTGACCAGTTCATTTGGATGTGTCTCATCGATGAAGTTCCTCTTGCAAGTTCTTTTTTTCGTTATGTTTGTAGGATTCTCACTTCCATTTTGTGTTTCTGTTTGGAAAGTGAGATTAAAGATAGCCATGTTGGCTATGGTGCATTTTTCCCCTATCCATTTGTTCATTTTCTTCTCTGTAATTCATGAATTCGTTTTGGTTCTTGCAATGCAGGCTCTGTTAACATTGTACAGTAATTCTGGGCTTATATTAAAGAGCTCGAAAGTGTATTGTATGCTACTTTACCCAGCATGGGTGATTTGTAGAGTTCAATATCAATCATTTTTTTCGAC

Fln Alignment:

Contig1989___ITGGHADNTVKLILAENAKTLESAAGHCAPVTCLAISPDGSTLVTGSRDATAILWRLHRSSDKVSYGRLEPSVLSPAAAVGSSNSGSTSANINMDGRKRYIE----GPLHVLRGHIGELTCCCINADLDLAVSCSRLGGVLLHSISRGRL--IRRLPIKRVDTVALSAEGMIIIWDKSSQQLRTF-TLNGISVARRVLSPFPGDITCIEISKDGKHALFGTS
Q3Y8L7______________IVTGSFDKTCKLWDAYTGQLYYTLKGHQTEIVCLSFNPQSTIIATGSMDNTAKLWDVETGQERATLAGHRAEIVS----LGFNTGGDLIVTGSFDHDSRLWDVRTGQCVHVLSGHRGEVSSTQFNYAGTLVVSGSIDCTSRLWDVRSGRCLSVKQGHTDEVLDVAFDAAGTKMVSASADGSARLYHTLTG--VCQHTLVGHEGEISKVAFNPQGTRLITASS

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
367			40	60	1.0
368		40		60	1.0
376			25	25	1.0
379		40	40	20	1.0
380		40	60		1.0
381	60			40	1.0
383	60			40	1.0
385	80			20	0.995493
386	40		60		1.0
388	20		80		0.995493
389		60		40	1.0
390	60		40		1.0
392	80		20		0.995493
393	40			60	1.0
396	80	20			0.995493
400	20			40	1.0
2185		88		11	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain