SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1954

Length: 2769 nt

UniGene Fasta

>sp_v3.0_unigene1954
TGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGACACTTGGATCATTGTTCGATATTTTGCATTTCTGCAACGGTTTCCATTCTCAAATTGCAGTCGGTGTGGAGTTCTGTATAGCCCTGAAATCAATTTTCCCCTGTTTTCTCTGTGTGTTTGAATGTTCTGTGCAGTTTGTTGAATAATTCCCATAGTGTTTTGTATAGAAATCCTGTTGGGTGTTTTTTGTTAAACATAAGTTCATTTGGATCGTCATCAGATTTAGCTCTTTGTGTCCAGATTGAATCCCCAACTTGTCAAGGGTTTCAATTCAGTATTCATTTTTAATAGAAAACCCTTGTGTATATCCAGATATAAATTCCTGCCGCGTGGATTGTTTTGTGCGTATCCGCAGAGAACTTTCTGTTGGATTTATTAATCCGCTGACACCCAAAGAAATCCCTGCTGGGTTGATTGTTTTGTGCATACCCACGTTTGAATCTCCGCTTGATTAAAATCTGTTTATACTGTTTTGATCAGTTATTGTGGTTTTTAACTGGATTCGGATAAATCCTTGCTATTTTTAGTAGATTTTGTTTTGTGATTCTCGAAATTCGCAATCATGTCTTTAGGAATTCCTCCTCAAATTGGCTCATTGGTATCCCCCGATAAGCTTTCGTATTCCGAGACGTCTTCTGATTGTTGCCTAGATGACGCTGGAAAGCTTATATCAGCTCAATGGAGGCCTTCTTCAGGTCTTAATTGCAAAACCCAGAGACCTAAAGTAGATTTTGATATGCACTCATTGCAAGTTTCTTCTCCCCCTGTAAGTCCATGTAGTTCTTCTCCGTCTGCCGAGGAATGGTGGAGGAGGACTGGTCATAGCCCTAGAGGACAAAATGTCGGGCTTCGACCAGATTTGTCGGTGGCGTGCCAGGCATTTGAGGTTCAAACTCAGGCTGTCACTGCCACAGATGCGGAAGCCGGAGTTGGTGCCCAAATTGAGCAGAGTTTTGAAGAAAAGTTGCATGATTTGCCTCTGGATGCTGTGAAAAAGCATGGAGCGGGCGGGGTGCCTGTGTTTGTTATGCTCCCTCTGGATAGCATAAACCATAACAATACGGTCAATAGACGGAAGGCTATGAATGCCAGTCTTCAAGCCTTGAAGAGTGCTGGTGTTGAGGGAGTTATGGTGGATGTTTGGTGGGGTCTTGTTGAACGAGAGGCTCCAGGCCAGTATAATTGGTCTGGGTACAGAGAGCTGCTGGAAATGGTCAAGAAACATGGATTGAAAGTCCAGGCTGTAATGTCATTCCACCAGTGTGGAGGAAATGTTGGGGATTCTGCCAATATTCCATTGCCAAAATGGGTTGTCGAAGAAATAAACCATGATAACGATCTAGCCTACACGGACCAGTGGGGCAGGAGAAACTATGAGTATATTTCTTTGGGATGTGATAATCTTCCAGTTTTGAAGGGAAGGACACCCGTTCAATGCTATGGTGATTACATGCGGAGTTTCAAGGAGAATTTTAAGGATCTTTTGGGGCAAACCATTGTGGAAATTCAAGTGGGAATGGGTCCTGCAGGAGAGCTGCGGTATCCATCTTATCCTGAGAGTAACGGTACATGGAAATTCCCAGGGATTGGAGCATTTCAGTGCTATGATAAGTATATGATCTCTAACCTTAGATCCACGTCCGAAGCTGCTGGAAAGCAGGAGTGGGGTAATGGGGGTCCAAGTGATGCAGGTCATTACAATAACTGGCCTGAGGACAGCCCGTTTTTCCGCAGAGATGGTGGCTGGAACAGTTCTTATGGTGAGTTTTTTCTTGAGTGGTATTCTCGTATGCTTCTTGATCATGGAGAGAGAATCCTAGGAGCAGCTGAAGCCATTTTCCATGGCACTGGCACCAAGCTTTCTGGCAAAGTGGCTGGTATTCACTGGCATTATGGAACCAGATCTCATGCCCCTGAGCTTACTGCTGGATATTATAATACCCGGTTCAGAGATGGGTATCTGCCAATAGCTTCCATGTTTGCAAGACATGGGGTGATTTTCAATTTTACTTGCATTGAAATGAAGGATTATGAACAGCCGGGAGATGCACAATGCTCCCCAGAGAAGCTGATCAAACAAGTCATCCTGGCAACTCGAAAAGCAGGGGTACGTCTTGCAGGGGAGAATGCGCTTCCAAGATTTGATCAAGATGCACACCATCAGATCATTAGGAACGCCAATCTCCGACTGCCAGAGGATGGTCGAGACACCAGAGTTGAACCCATGTGTGCATTTACTTATTTGAGAATGAACCAGCATTTATTCCAGCCTGAAAATTGGAGGTTGTTTGTCTCATTTGTTAGAAAATTGGCACAAGGAGAGGCCTCCTTAAATTCCTGGGAGCAAGAACACAGAGACACAGACTCATTTGTCCATGCCAGTGGGCCATTTTTCCAAGAGGCTGCTGCACTGATGCATAACTAGGTCTCAGGCATACTTCTTAGCATTTCAGTTATAGTTCTTATGTTGTACTTTTATAAAGTTCGTGATTTGTCTTTTAATTGTTATAATGTCGGGATGTATAGACCTACAGCTCTTATCCATTGGGCCGCTGCCCCTGCTGCATTCTAATTCTATGGCAGCAGTTTGCAAGCCAGCAGGAAGTCAATGGGCATATTAGTGCTATGTAATCTTAAAGATTATGAAGAAAACGTTGTAAGTTTTGTTGATACAAAATATAATTATAAGATCTATAGATATTTATTAGATAGAACATCGTTCTTGTTGTTTTCA

Ace file of the UniGene sp_v3.0_unigene1954

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-amylase n=1 Tax=Populus trichocarpa RepID=B9HKX1_POPTR	-	-	67%
FL-Next	sp=Beta-amylase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Sma3	Beta-amylase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Beta-amylase.	EC:3.2.1.2	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		0.0	%
Sma3	Metabolic pathways	01100		0.0	%

Source	Gene names
Sma3	AMY1; AMYB; AMYB1; AMYB2; AMYB3; AT4G15210; AT4g00490; AT4g17090; AT5G55700; Amy2; At2g32290; At2g45880; At3g23920; At4g15210; At4g17090; At5g45300; At5g45300/K9E15_8; At5g55700; BA1; BAM1; BAM2; BMY1; Bamy2; Bmy1; CHLREDRAFT_112511; CHLREDRAFT_129211; CH

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	beta-amylase activity	GO:0016161	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	maltose biosynthetic process	GO:0000024	Biological Process	-
Sma3	polysaccharide catabolic process	GO:0000272	Biological Process	-
Sma3	starch catabolic process	GO:0005983	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 14B, plant	IPR001371	-	-
Sma3	Glycoside hydrolase, family 14	IPR001554	-	-
Sma3	BZR1, transcriptional repressor	IPR008540	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 14, conserved site	IPR018238	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G23920.1	BAM1, BMY7, TR-BAMY beta-amylase 1 chr3:8641722-8644199 FORWARD LENGTH=575	67%
RefSeq	Arabidopsis thaliana	NP_189034.1	beta-amylase 1 [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002311706.1	predicted protein [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVE4

Fln msg: your sequence is longer than subject: 621 - 492

Fln protein: MSLGIPPQIGSLVSPDKLSYSETSSDCCLDDAGKLISAQWRPSSGLNCKTQRPKVDFDMHSLQVSSPPVSPCSSSPSAEEWWRRTGHSPRGQNVGLRPDLSVACQAFEVQTQAVTATDAEAGVGAQIEQSFEEKLHDLPLDAVKKHGAGGVPVFVMLPLDSINHNNTVNRRKAMNASLQALKSAGVEGVMVDVWWGLVEREAPGQYNWSGYRELLEMVKKHGLKVQAVMSFHQCGGNVGDSANIPLPKWVVEEINHDNDLAYTDQWGRRNYEYISLGCDNLPVLKGRTPVQCYGDYMRSFKENFKDLLGQTIVEIQVGMGPAGELRYPSYPESNGTWKFPGIGAFQCYDKYMISNLRSTSEAAGKQEWGNGGPSDAGHYNNWPEDSPFFRRDGGWNSSYGEFFLEWYSRMLLDHGERILGAAEAIFHGTGTKLSGKVAGIHWHYGTRSHAPELTAGYYNTRFRDGYLPIASMFARHGVIFNFTCIEMKDYEQPGDAQCSPEKLIKQVILATRKAGVRLAGENALPRFDQDAHHQIIRNANLRLPEDGRDTRVEPMCAFTYLRMNQHLFQPENWRLFVSFVRKLAQGEASLNSWEQEHRDTDSFVHASGPFFQEAAALMHN*

Protein Length: 622

Fln nts: TGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGACACTTGGATCATTGTTCGATATTTTGCATTTCTGCAACGGTTTCCATTCTCAAATTGCAGTCGGTGTGGAGTTCTGTATAGCCCTGAAATCAATTTTCCCCTGTTTTCTCTGTGTGTTTGAATGTTCTGTGCAGTTTGTTGAATAATTCCCATAGTGTTTTGTATAGAAATCCTGTTGGGTGTTTTTTGTTAAACATAAGTTCATTTGGATCGTCATCAGATTTAGCTCTTTGTGTCCAGATTGAATCCCCAACTTGTCAAGGGTTTCAATTCAGTATTCATTTTTAATAGAAAACCCTTGTGTATATCCAGATATAAATTCCTGCCGCGTGGATTGTTTTGTGCGTATCCGCAGAGAACTTTCTGTTGGATTTATTAATCCGCTGACACCCAAAGAAATCCCTGCTGGGTTGATTGTTTTGTGCATACCCACGTTTGAATCTCCGCTTGATTAAAATCTGTTTATACTGTTTTGATCAGTTATTGTGGTTTTTAACTGGATTCGGATAAATCCTTGCTATTTTTAGTAGATTTTGTTTTGTGATTCTCGAAATTCGCAATC_-_ATGTCTTTAGGAATTCCTCCTCAAATTGGCTCATTGGTATCCCCCGATAAGCTTTCGTATTCCGAGACGTCTTCTGATTGTTGCCTAGATGACGCTGGAAAGCTTATATCAGCTCAATGGAGGCCTTCTTCAGGTCTTAATTGCAAAACCCAGAGACCTAAAGTAGATTTTGATATGCACTCATTGCAAGTTTCTTCTCCCCCTGTAAGTCCATGTAGTTCTTCTCCGTCTGCCGAGGAATGGTGGAGGAGGACTGGTCATAGCCCTAGAGGACAAAATGTCGGGCTTCGACCAGATTTGTCGGTGGCGTGCCAGGCATTTGAGGTTCAAACTCAGGCTGTCACTGCCACAGATGCGGAAGCCGGAGTTGGTGCCCAAATTGAGCAGAGTTTTGAAGAAAAGTTGCATGATTTGCCTCTGGATGCTGTGAAAAAGCATGGAGCGGGCGGGGTGCCTGTGTTTGTTATGCTCCCTCTGGATAGCATAAACCATAACAATACGGTCAATAGACGGAAGGCTATGAATGCCAGTCTTCAAGCCTTGAAGAGTGCTGGTGTTGAGGGAGTTATGGTGGATGTTTGGTGGGGTCTTGTTGAACGAGAGGCTCCAGGCCAGTATAATTGGTCTGGGTACAGAGAGCTGCTGGAAATGGTCAAGAAACATGGATTGAAAGTCCAGGCTGTAATGTCATTCCACCAGTGTGGAGGAAATGTTGGGGATTCTGCCAATATTCCATTGCCAAAATGGGTTGTCGAAGAAATAAACCATGATAACGATCTAGCCTACACGGACCAGTGGGGCAGGAGAAACTATGAGTATATTTCTTTGGGATGTGATAATCTTCCAGTTTTGAAGGGAAGGACACCCGTTCAATGCTATGGTGATTACATGCGGAGTTTCAAGGAGAATTTTAAGGATCTTTTGGGGCAAACCATTGTGGAAATTCAAGTGGGAATGGGTCCTGCAGGAGAGCTGCGGTATCCATCTTATCCTGAGAGTAACGGTACATGGAAATTCCCAGGGATTGGAGCATTTCAGTGCTATGATAAGTATATGATCTCTAACCTTAGATCCACGTCCGAAGCTGCTGGAAAGCAGGAGTGGGGTAATGGGGGTCCAAGTGATGCAGGTCATTACAATAACTGGCCTGAGGACAGCCCGTTTTTCCGCAGAGATGGTGGCTGGAACAGTTCTTATGGTGAGTTTTTTCTTGAGTGGTATTCTCGTATGCTTCTTGATCATGGAGAGAGAATCCTAGGAGCAGCTGAAGCCATTTTCCATGGCACTGGCACCAAGCTTTCTGGCAAAGTGGCTGGTATTCACTGGCATTATGGAACCAGATCTCATGCCCCTGAGCTTACTGCTGGATATTATAATACCCGGTTCAGAGATGGGTATCTGCCAATAGCTTCCATGTTTGCAAGACATGGGGTGATTTTCAATTTTACTTGCATTGAAATGAAGGATTATGAACAGCCGGGAGATGCACAATGCTCCCCAGAGAAGCTGATCAAACAAGTCATCCTGGCAACTCGAAAAGCAGGGGTACGTCTTGCAGGGGAGAATGCGCTTCCAAGATTTGATCAAGATGCACACCATCAGATCATTAGGAACGCCAATCTCCGACTGCCAGAGGATGGTCGAGACACCAGAGTTGAACCCATGTGTGCATTTACTTATTTGAGAATGAACCAGCATTTATTCCAGCCTGAAAATTGGAGGTTGTTTGTCTCATTTGTTAGAAAATTGGCACAAGGAGAGGCCTCCTTAAATTCCTGGGAGCAAGAACACAGAGACACAGACTCATTTGTCCATGCCAGTGGGCCATTTTTCCAAGAGGCTGCTGCACTGATGCATAACTAG___GTCTCAGGCATACTTCTTAGCATTTCAGTTATAGTTCTTATGTTGTACTTTTATAAAGTTCGTGATTTGTCTTTTAATTGTTATAATGTCGGGATGTATAGACCTACAGCTCTTATCCATTGGGCCGCTGCCCCTGCTGCATTCTAATTCTATGGCAGCAGTTTGCAAGCCAGCAGGAAGTCAATGGGCATATTAGTGCTATGTAATCTTAAAGATTATGAAGAAAACGTTGTAAGTTTTGTTGATACAAAATATAATTATAAGATCTATAGATATTTATTAGATAGAACATCGTTCTTGTTGTTTTCA

Fln Alignment:

Contig1954___LDAVKKHGAGGVPVFVMLPLDSINHNNTVNRRKAMNASLQALKSAGVEGVMVDVWWGLVEREAPGQYNWSGYRELLEMVKKHGLKVQAVMSFHQCGGNVGDSANIPLPKWVVEEINHDNDLAYTDQWGRRNYEYISLGCDNLPVLKGRTPVQCYGDYMRSFKENFKDLLGQTIVEIQVGMGPAGELRYPSYPESNGTWKFPGIGAFQCYDKYMISNLRSTSEAAGKQEWGNGGPSDAGHYNNWPEDSPFFRRDGGWNSSYGEFFLEWYSRMLLDHGERILGAAEAIFHGTGTKLSGKVAGIHWHYGTRSHAPELTAGYYNTRFRDGYLPIASMFARHGVIFNFTCIEMKDYEQPGDAQCSPEKLIKQVILATRKAGVRLAGENALPRFDQDAHHQIIRNANLRLPEDGRDTRVEPMCAFTYLRMNQHLFQPENWRLFVSFVRKLAQGEASLNSWEQEHR
A9NVE4______________LPSISTRDHGGVPVFVKLPLDSVTSKHTVNRRKAMDASLMALKSAGVEGVMVNVWWGLVEREAPGEYNWSAYRELLEMVRKRGLKVQAVMSFHKCGGNVGDSVSIPLPKWVVEEIDRDNDLAYTDQWERRNYEYISLGCDNLPVLKGRTPVQCYSDFMRSFKENFTDLMGETVVEIQVGMGPAGELRYPSYPESNGTWKFPGIGAFQCYDKYMLANLKATAETAGKKEWGCGGPTNAGYYNNWSEETEFFCSEGGWNSPYGEFFLQWYSNMLLNHGERILAEAESIFHKSGARLSGKVAGIHWHYLTRSHAPELTAGYYNTGDRDGYLPIAQMFGRHGVVFIFTCIEMKDVEQPADAKCSPEKLIKQVIKATRKARIHLAGENALPRFDEAAYTQVLNNSCLRLEQDNPDDKIEPMCAFTYLRMSQHLFQSKNWSTFVSFVRRMSQQNAVSISRDEKQR

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
260	75		25		0.996473
1098		33	66		0.997452
1104		33		66	0.997452
1209		16	83		1.0
1786	83			16	0.994512
1839		76		23	1.0
2053	14		85		0.993533
2577	62	37			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain