SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1952

Length: 1179 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene1952 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peptidyl-prolyl cis-trans isomerase n=3 Tax=Pinaceae RepID=A5HIY2_PINTA	-	-	0.0	92%
FL-Next	sp=Peptidyl-prolyl cis-trans isomerase; Pinus taeda (Loblolly pine).	-	-	0.0	98%

Source	ECs	Term	Type	e value	Identity
Sma3	Peptidylprolyl isomerase.	EC:5.2.1.8	-	0.0	-

Source	Gene names
Sma3	Cyp1;

Source	GOs	Term	Type	e value	Identity
Sma3	peptidyl-prolyl cis-trans isomerase activity	GO:0003755	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain	IPR002130	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G16600.1	ROC3 rotamase CYP 3 chr2:7200862-7201383 FORWARD LENGTH=173	85%
RefSeq	Arabidopsis thaliana	NP_179251.1	Peptidyl-prolyl cis-trans isomerase CYP19-1 [Arabidopsis thaliana]	85%
RefSeq	Populus trichocarpa	XP_002301975.1	predicted protein [Populus trichocarpa]	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A5HIY2

Fln msg:

Fln protein: MPNPKVYFDMSVGGAPAGRIVMELFADVTPKTAENFRALCTGEIGVGKSGKPLHYKGSTFHRVIPGFMCQGGDFTAGNGTGGESIYGNKFPDENFVKKHTGPGILSMANAGKNTNGSQFFICTAKTEWLDGKHVVFGQVVEGLDIVKAIEGVGSSSGRTSKPVVIADCGQL*

Protein Length: 173

Fln nts: GTTCGATACTCCGGTGTCCGATCGAACGGTTAGATATTGTCTCAAGATTTTTTTCTTCTGACTCTGGAATTTATATAGCGGTCAAGGGGGAGCTCTGGAATTCATTCGGCGCTCATCAGTGTATACGACTTTAAGACTGAGCTTTCGATTTGCAGTAGCGACTAAA_-_ATGCCGAACCCTAAGGTTTACTTCGACATGTCCGTGGGGGGCGCGCCCGCCGGAAGAATCGTGATGGAGCTTTTTGCTGACGTTACGCCTAAGACGGCAGAGAACTTCCGAGCACTCTGCACCGGTGAGATTGGCGTGGGGAAATCCGGCAAGCCTCTGCACTACAAGGGATCCACGTTCCACCGTGTGATCCCTGGCTTCATGTGCCAGGGAGGGGATTTCACCGCCGGAAACGGCACTGGCGGTGAGTCCATTTACGGTAACAAGTTCCCCGACGAGAATTTCGTGAAGAAGCACACCGGGCCGGGAATCCTGTCGATGGCAAACGCCGGGAAGAATACCAATGGATCGCAGTTCTTTATCTGTACTGCAAAGACAGAGTGGCTGGACGGGAAACATGTGGTGTTCGGTCAGGTGGTGGAGGGCCTTGATATTGTCAAGGCCATCGAGGGTGTGGGATCCTCCAGTGGCAGGACTTCCAAGCCCGTAGTAATTGCTGACTGCGGTCAGCTCTGA___ACTGCGCTTTAATAATTACTATGGTTAGGTTAGGAAAATTTACGAGTTTACTGTTGTGTTGTAATAAGGGTTTCGAGTGGCATGGCCACCCCTGACACCTTTTATCGTATATGTTGCGTATATTCGTCTTTTTAAGTGACTAACGACGACTCTTGTGGAGTCGTGGGACTAGCTTATATTTCCATGGGATACTCTCACATTTGAAATCTTATGATAATTATTACATGGTGTGGCTTGCTTTTTACGGTCATGTGAGGGCCATGAGGTTGTGCCCCACTGAATCTTTTTCCTATCATAGTGAATGCCGCCCTTCTGTCGCATATATTTTAGATATTTGACAAATTTTATCGCCAAATAAAATGGCATTATCTAACAAACGTGATGGAAAGTTTGAACCAGTTGTCCTTTTCAATGGTTTATCCCTTTATTAATTAATGCTTTACAAGTATTTTATATTGTTGAAAATTTGTCATTCTTGAATAAATCAATGCTTCTTA

Fln Alignment:

Contig1952___MPNPKVYFDMSVGGAPAGRIVMELFADVTPKTAENFRALCTGEIGVGKSGKPLHYKGSTFHRVIPGFMCQXXXXXXXXXXXGESIYGNKFPDENFVKKHTGPGILSMANAGKNTNGSQFFICTAKTEWLDGKHVVFGQVVEGLDIVKAIEGVGSSSGRTSKPVVIADCGQL
A5HIY2______________MPNPKVYFDMSVGGAPAGRIVMELFADVTPKTAENFRALCTGEIGVGKSGKPLHYKGSAFHRVIPGFMCQGGDFTAGNGTGGESIYGNKFPDENFVKKHTGPGILSMANAGKNTNGSQFFICTAKTEWLDGKHVVFGQVVEGLDVVKAIEGVGSSSGRTSKPVVIADCGQL

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
51	66	33			0.997452
1020		91	7	1	1.0
1051		1	98		0.99732
1063	2		97		0.99763
1073		2	97		0.914425
1075	97	2			0.924243

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain