SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1948

Length: 3226 nt

UniGene Fasta

>sp_v3.0_unigene1948
CATTCATTTTTTTTCCTCCTGGCATTTGGTTTCGGTACTAATCCACAAATGGCAATTCTGAATATATGAATTCTTTCTCTTGTGGATACCTGGTAGGACAGAAACCCTCGATGAGGTTAAGTTTGGTCTGTATTCGTTGAGAGGGTCTTCATCTGATATGGATTGGATCAGAACTGGGGCACATAATGTTTATGTTCAAGGAGAGGCAATGGGTTTGGTCGATAATCCCCAGTCTCCTAGATTTGGGTTTTTGTTTCATGTGAATGTAAATACAAATTAAGTTAAGAAATTCCATTGGAAAACCCATATTAGGGCTTTGGGCCTACATGGGTGCCATTGGAGACCGATCAGAAGGGCGGTTTGAGTGCGCTGTATAAGTGGTTTCTGTTTTGATTCAGAGGAGCCCATGTGTGTGATCCGAGCAGATTCAAACGCGTGACTTTGTTTGTGTTTTTTCAAAAGGCCGCTGCTCCCTGTTATCACACAGTTCACATGCCGTAAGGACTTGACGAGATTGTTGCAATGATCTGTCTGGGTGGGATTGTCATCGTTTCATTCCTCCTCCAGAACATTGCAATGGCATCAGAGGATGGGGGTTCCAGATGCAATTGTGACGGGGAAGGATGGTGGAATGTTGAGAACATAATGCAATGCCAGATGGTCAGTGATTTTCTTATTGCCTTAGCTTACTTTTCCATTCCTCTTGAGCTTCTGTACTTTTTGAGCTGCTCCAATGTCTTCCCATTCAGATGGGTCATAGTTCAGTTTGGAGCATTCATAGTGCTTTGTGGGCTAACTCACTTTATCAACATTTGGACATATGGTCCTCAGTCTTTCCATGTAATGCTGGCACTAACCATCTTCAAGTTCTTAACCGCCCTTGTTTCTTGTGCCACGGCCATAACTCTTGTAACTCTAATTCCTGAATTGCTACGGGTGAAGGTAAGAGAAATTTTTCTTAAAAACAAGGCAAGGGAACTTGATAGGGAGGTAGACATTGTGAAAAGGAAGGAGGAAACTAGTTGGCATGTCCACATGCTAACTCAAGAAATACGAAGTTCTCTAGATAGGCACACTATTCTAAATACTACTCTGATTTCACTAGCAAAGACGTTGAATTTGGAAAACTGCACTATATGGATGCCACTGGCAGATGGTACTGCCATGGAGGTATCCCATGAGCTCAAACGACGGCATTTGCAAGTACCATTAACTGTTCCCACAACCGACCCAGATGTGAAAAAGATTATGCATAGCGAGGATGCAATCCTTTTAAGTCCTGATTCTGCCTTGGGAAAGGAGAGTAATCACCACTGGTCATTAGCTGGGCCTGTGGCAGCAATAAGGGTGCCTTTGTGGAAGGCATCAAATTTCAAGAGTGGAGCATCGGTAGATAGAGAAGAATCATATGCAATAATGGTGCTAGTCTTACCTTGTGAAGATGAAAGGCAGTGGAGTTCTCAAGAATTATATATTGTCAAAGATGTGGCAGAACAAGTTGCTGTTGCCCTATCTCATGCAGCTGTTTTAGAAGAATCACAGAAGCTGAAGGCTCCACTTATTGATAAGAATAAAACATTACAACAGGCAAAACAGGATGTATTGAGAGCAAGCAAGGCACGACATTCTTTTCAATTGGCAATGAACCGTGAAATGAGGCTTCCCATGCATGCTATTTCTGCACTCTCATCTATTTTACAAAGTGCTAGACTGAATGTTGAACAACTGGCTATGGCAAATATGCTAGCTAAAAGTAGCAGCCTTCTCTCAACTCTCATAAATGACATAATGGATTTTTCAGAATTGGAGGATACTTCTTTGGTTCTTCAGTTACACCCCTTCCAGCTACATGGTATGCTGAAAGATGCAGCACACCTCACAGAGACCATGTCTAGAAGCAAGGGTCTTCTATTAAATATTGAAATAGGTGATGGGATGCCTGACCATGTGATAGGAGATGAAAAACGAATTCTACGGATTATTTTACATATGGTTGGAAATGCAATCAATTCAACCAAACAAGGAACAATATCAATTCGCATCTGCGTCGAAGACAGAGCTGAAGGTTGGTGGGACCCCAACAATCGACGATGGAGACCCTCACTATGCGAAGGTTTTACATATTTAAGATTTGAGATCAGGACAACTGGCTCTGGAAGTATTCAAAATGACAATCCCAGTTTCCTGACAGTTGTACAAGATGGTAAAAGTGATTCGTCATCATCAACTGGGGAAGGACTTGGTTTTGCTATTTGTAAAAAGTTTGTGCAGCTTATGCATGGAAATATTTGGCTTGAGCCTAACTCCAAGGGTGAAGGCTCTGTTGTGACCTTTTTAATTAGAGTACAACTGCAGACATCAACTGCAAACAAACATTGGCTGTCTCCAGATGAGAAGATTTACAAGTCTTCATTTAAAGGTTTGAAAGTTCTTGTAGCAGATGACAATAATGTAAGTCGTTCAGTTACGAGAAGGCTGCTTCAAGAGCTAGGTTGTCAAACAACTGAAGTAGATTCAGGTTACAGGTGCTTAATGACTTTGCTTCAGTCCGGAAGTGCATTTCAATTGGTCTTTCTGGAAGTTTGCTTGGCCCAGATGGATGGATATGAGGTAGCCTTCCGTATACGACAGAAATTCAGATCAAGAAACCGTCCTTTGGTTGTGGCTTTAACAGCTAGTACAGACAAGGAGACCATGGAGAGGTGCCTTCAAACTGGGATGGATGGTGTTATACGGAAGCCTGTTACGTTAAGGGAAATGAGCAATGAGCTTTTTAAAATTGTACATCAGACAAATAACATCCACGAATAGTGACTACAAGTGTACTTTGTCTCTGAGGTACAGTCCATCTTGTGAAGATTGATTGCTTTGCCAGGTTCACAGGAGTGCAAATTATGGTGACAATGAGACCATGCTACAGAGTCAGTTACATTGGAGATTCCTGTGCTTAAATTCAAAAGGTCCATGGTCTTCTCCGAGTGTTAAGAAACACGGTACTTTGCCATGTACTTTTTTCCATTGCTACTAAAATCATTCTGTCACACACAGGTTCTGTATGGGTAATTACCTCATCTCATGCATGACGATGTTAGAAGTCCTGGGACCCATTTGACAAGTCACTGACTGTTTTAGGTCATTCTTACAGAAGATGAAATCAAAATTATATTGATATGAAGCTCATGATTCTTTATTGTGATCCATGATGTTCATCAAGCAAGTACTTTTT

Ace file of the UniGene sp_v3.0_unigene1948

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ethylene receptor homolog n=2 Tax=Physcomitrella patens RepID=A9CPF1_9BRYO	-	-	54%
FL-Next	tr=ETR2 ethylene receptor; Physcomitrella patens subsp. patens (Moss).	-	-	55%
Sma3	Ethylene receptor	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Histidine kinase.	EC:2.7.13.3	-	1.567e-13	-

Source	Gene names
Sma3	46C02.6; At1g66340; At3g04580; At3g23150; BO-ETR2; CS-ERS; CS-ETR2; CcEIN4; Cm-ERS1; DC-ERS2; DC-ETR1; DCERS; DERS1a; DERS1b; DETR1a; DETR1b; DG-ERS; DkERS1; DkETR2; Dl-ERS1-3; Dl-ERS2; EIN4; ER1; ER2; ER3; ER4; ER5; ERS; ERS1; ERS14; ERS1a; ERS1b; ERS2;

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	two-component sensor activity	GO:0000155	Molecular Function	-
Sma3	two-component response regulator activity	GO:0000156	Molecular Function	-
Sma3		GO:0004696	Molecular Function	-
Sma3	signal transducer activity	GO:0004871	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	ethylene binding	GO:0051740	Molecular Function	-
Sma3	two-component signal transduction system (phosphorelay)	GO:0000160	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to insect	GO:0009625	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	cytokinin metabolic process	GO:0009690	Biological Process	-
Sma3	detection of ethylene stimulus	GO:0009727	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	response to gibberellin stimulus	GO:0009739	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	negative regulation of ethylene mediated signaling pathway	GO:0010105	Biological Process	-
Sma3	regulation of stomatal movement	GO:0010119	Biological Process	-
Sma3	sugar mediated signaling pathway	GO:0010182	Biological Process	-
Sma3	peptidyl-histidine phosphorylation	GO:0018106	Biological Process	-
Sma3	hydrogen peroxide biosynthetic process	GO:0050665	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Signal transduction response regulator, receiver domain	IPR001789	-	-
Sma3	GAF domain	IPR003018	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain	IPR003661	-	-
Sma3	Signal transduction histidine kinase-related protein, C-terminal	IPR004358	-	-
Sma3	Signal transduction histidine kinase, core	IPR005467	-	-
Sma3	Tachykinin/Neurokinin-like, conserved site	IPR013055	-	-
Sma3	Signal transduction histidine kinase, hybrid-type, ethylene sensor	IPR014525	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002315717.1	ethylene receptor 2 [Populus trichocarpa]	0.0	48%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: A9ST35

Fln msg:

Fln protein: MICLGGIVIVSFLLQNIAMASEDGGSRCNCDGEGWWNVENIMQCQMVSDFLIALAYFSIPLELLYFLSCSNVFPFRWVIVQFGAFIVLCGLTHFINIWTYGPQSFHVMLALTIFKFLTALVSCATAITLVTLIPELLRVKVREIFLKNKARELDREVDIVKRKEETSWHVHMLTQEIRSSLDRHTILNTTLISLAKTLNLENCTIWMPLADGTAMEVSHELKRRHLQVPLTVPTTDPDVKKIMHSEDAILLSPDSALGKESNHHWSLAGPVAAIRVPLWKASNFKSGASVDREESYAIMVLVLPCEDERQWSSQELYIVKDVAEQVAVALSHAAVLEESQKLKAPLIDKNKTLQQAKQDVLRASKARHSFQLAMNREMRLPMHAISALSSILQSARLNVEQLAMANMLAKSSSLLSTLINDIMDFSELEDTSLVLQLHPFQLHGMLKDAAHLTETMSRSKGLLLNIEIGDGMPDHVIGDEKRILRIILHMVGNAINSTKQGTISIRICVEDRAEGWWDPNNRRWRPSLCEGFTYLRFEIRTTGSGSIQNDNPSFLTVVQDGKSDSSSSTGEGLGFAICKKFVQLMHGNIWLEPNSKGEGSVVTFLIRVQLQTSTANKHWLSPDEKIYKSSFKGLKVLVADDNNVSRSVTRRLLQELGCQTTEVDSGYRCLMTLLQSGSAFQLVFLEVCLAQMDGYEVAFRIRQKFRSRNRPLVVALTASTDKETMERCLQTGMDGVIRKPVTLREMSNELFKIVHQTNNIHE*

Protein Length: 764

Fln nts: CATTCATTTTTTTTCCTCCTGGCATTTGGTTTCGGTACTAATCCACAAATGGCAATTCTGAATATATGAATTCTTTCTCTTGTGGATACCTGGTAGGACAGAAACCCTCGATGAGGTTAAGTTTGGTCTGTATTCGTTGAGAGGGTCTTCATCTGATATGGATTGGATCAGAACTGGGGCACATAATGTTTATGTTCAAGGAGAGGCAATGGGTTTGGTCGATAATCCCCAGTCTCCTAGATTTGGGTTTTTGTTTCATGTGAATGTAAATACAAATTAAGTTAAGAAATTCCATTGGAAAACCCATATTAGGGCTTTGGGCCTACATGGGTGCCATTGGAGACCGATCAGAAGGGCGGTTTGAGTGCGCTGTATAAGTGGTTTCTGTTTTGATTCAGAGGAGCCCATGTGTGTGATCCGAGCAGATTCAAACGCGTGACTTTGTTTGTGTTTTTTCAAAAGGCCGCTGCTCCCTGTTATCACACAGTTCACATGCCGTAAGGACTTGACGAGATTGTTGCA_-_ATGATCTGTCTGGGTGGGATTGTCATCGTTTCATTCCTCCTCCAGAACATTGCAATGGCATCAGAGGATGGGGGTTCCAGATGCAATTGTGACGGGGAAGGATGGTGGAATGTTGAGAACATAATGCAATGCCAGATGGTCAGTGATTTTCTTATTGCCTTAGCTTACTTTTCCATTCCTCTTGAGCTTCTGTACTTTTTGAGCTGCTCCAATGTCTTCCCATTCAGATGGGTCATAGTTCAGTTTGGAGCATTCATAGTGCTTTGTGGGCTAACTCACTTTATCAACATTTGGACATATGGTCCTCAGTCTTTCCATGTAATGCTGGCACTAACCATCTTCAAGTTCTTAACCGCCCTTGTTTCTTGTGCCACGGCCATAACTCTTGTAACTCTAATTCCTGAATTGCTACGGGTGAAGGTAAGAGAAATTTTTCTTAAAAACAAGGCAAGGGAACTTGATAGGGAGGTAGACATTGTGAAAAGGAAGGAGGAAACTAGTTGGCATGTCCACATGCTAACTCAAGAAATACGAAGTTCTCTAGATAGGCACACTATTCTAAATACTACTCTGATTTCACTAGCAAAGACGTTGAATTTGGAAAACTGCACTATATGGATGCCACTGGCAGATGGTACTGCCATGGAGGTATCCCATGAGCTCAAACGACGGCATTTGCAAGTACCATTAACTGTTCCCACAACCGACCCAGATGTGAAAAAGATTATGCATAGCGAGGATGCAATCCTTTTAAGTCCTGATTCTGCCTTGGGAAAGGAGAGTAATCACCACTGGTCATTAGCTGGGCCTGTGGCAGCAATAAGGGTGCCTTTGTGGAAGGCATCAAATTTCAAGAGTGGAGCATCGGTAGATAGAGAAGAATCATATGCAATAATGGTGCTAGTCTTACCTTGTGAAGATGAAAGGCAGTGGAGTTCTCAAGAATTATATATTGTCAAAGATGTGGCAGAACAAGTTGCTGTTGCCCTATCTCATGCAGCTGTTTTAGAAGAATCACAGAAGCTGAAGGCTCCACTTATTGATAAGAATAAAACATTACAACAGGCAAAACAGGATGTATTGAGAGCAAGCAAGGCACGACATTCTTTTCAATTGGCAATGAACCGTGAAATGAGGCTTCCCATGCATGCTATTTCTGCACTCTCATCTATTTTACAAAGTGCTAGACTGAATGTTGAACAACTGGCTATGGCAAATATGCTAGCTAAAAGTAGCAGCCTTCTCTCAACTCTCATAAATGACATAATGGATTTTTCAGAATTGGAGGATACTTCTTTGGTTCTTCAGTTACACCCCTTCCAGCTACATGGTATGCTGAAAGATGCAGCACACCTCACAGAGACCATGTCTAGAAGCAAGGGTCTTCTATTAAATATTGAAATAGGTGATGGGATGCCTGACCATGTGATAGGAGATGAAAAACGAATTCTACGGATTATTTTACATATGGTTGGAAATGCAATCAATTCAACCAAACAAGGAACAATATCAATTCGCATCTGCGTCGAAGACAGAGCTGAAGGTTGGTGGGACCCCAACAATCGACGATGGAGACCCTCACTATGCGAAGGTTTTACATATTTAAGATTTGAGATCAGGACAACTGGCTCTGGAAGTATTCAAAATGACAATCCCAGTTTCCTGACAGTTGTACAAGATGGTAAAAGTGATTCGTCATCATCAACTGGGGAAGGACTTGGTTTTGCTATTTGTAAAAAGTTTGTGCAGCTTATGCATGGAAATATTTGGCTTGAGCCTAACTCCAAGGGTGAAGGCTCTGTTGTGACCTTTTTAATTAGAGTACAACTGCAGACATCAACTGCAAACAAACATTGGCTGTCTCCAGATGAGAAGATTTACAAGTCTTCATTTAAAGGTTTGAAAGTTCTTGTAGCAGATGACAATAATGTAAGTCGTTCAGTTACGAGAAGGCTGCTTCAAGAGCTAGGTTGTCAAACAACTGAAGTAGATTCAGGTTACAGGTGCTTAATGACTTTGCTTCAGTCCGGAAGTGCATTTCAATTGGTCTTTCTGGAAGTTTGCTTGGCCCAGATGGATGGATATGAGGTAGCCTTCCGTATACGACAGAAATTCAGATCAAGAAACCGTCCTTTGGTTGTGGCTTTAACAGCTAGTACAGACAAGGAGACCATGGAGAGGTGCCTTCAAACTGGGATGGATGGTGTTATACGGAAGCCTGTTACGTTAAGGGAAATGAGCAATGAGCTTTTTAAAATTGTACATCAGACAAATAACATCCACGAATAG___TGACTACAAGTGTACTTTGTCTCTGAGGTACAGTCCATCTTGTGAAGATTGATTGCTTTGCCAGGTTCACAGGAGTGCAAATTATGGTGACAATGAGACCATGCTACAGAGTCAGTTACATTGGAGATTCCTGTGCTTAAATTCAAAAGGTCCATGGTCTTCTCCGAGTGTTAAGAAACACGGTACTTTGCCATGTACTTTTTTCCATTGCTACTAAAATCATTCTGTCACACACAGGTTCTGTATGGGTAATTACCTCATCTCATGCATGACGATGTTAGAAGTCCTGGGACCCATTTGACAAGTCACTGACTGTTTTAGGTCATTCTTACAGAAGATGAAATCAAAATTATATTGATATGAAGCTCATGATTCTTTATTGTGATCCATGATGTTCATCAAGCAAGTACTTTTT

Fln Alignment:

Contig1948___GGSRCNCDGEGWWNVENIMQCQMVSDFLIALAYFSIPLELLYFLSCSNVFPFRWVIVQFGAFIVLCGLTHFINIWTYGPQSFHVMLALTIFKFLTALVSCATAITLVTLIPELLRVKVREIFLKNKARELDREVDIVKRKEETSWHVHMLTQEIRSSLDRHTILNTTLISLAKTLNLENCTIWMPLADGTAMEVSHELKRRHLQVPLTVPTTDPDVKKIMHSEDAILLSPDSALGKESNHHWSLAGPVAAIRVPLWKASNFKSGASVDREESYAIMVLVLPCEDERQWSSQELYIVKDVAEQVAVALSHAAVLEESQKLKAPLIDKNKTLQQAKQDVLRASKARHSFQLAMNREMRLPMHXXXXXXXXXXXXRLNVEQLAMANMLAKSSSLLSTLINDIMDFSELEDTSLVLQLHPFQLHGMLKDAAHLTETMSRSKGLLLNIEIGDGMPDHVIGDEKRILRIILHMVGNAINSTKQGTISIRICVED-RAEGWWDPNNRRWRPSLCEGFTYLRFEIRTTGSGSIQNDNPS-FLTVVQDGKSDSSSSTGEGLGFAICKKFVQLMHGNIWLEPNSKGEGSVVTFLIRVQLQTSTANKHWL-SPDEKIYKSSFKGLKVLVADDNNVSRSVTRRLLQELGCQTTEVDSGYRCLMTLLQSGSAFQLVFLEVCLAQMDGYEVAFRIRQKFRSRNRPLVVALTASTDKETMERCLQTGMDGVIRKPVTLREMSNELFKIVH
A9ST35______________GHPGCNCE-EDWGLLELVTRCQLASDFLIALAYFSIPLELVYFVSFSHVFPFRWIIIQFGTFIVLCGLTHFIAIWTYGPHSFLIMLIQTILKIATALVSCATAITLVHVIPTLLHVKVRELFLKHKAAELDREMGIIKDQEEAGRHVRMLTNEIRSTLDRHTILNTTLVELAKTLELANCTIWEPNVEGDAIKLTHELDRRYLQVPVTIPASDKTVQQIIQTSEAIVIPPVCALGKASNHR-VLAGAMAAVRLPLLYVSNFKGGTPEVVSASYAILVLVLPGETGRVWTAHEIEMVEVVADQVAVALSHAAVLEDSQRTRDALVDQNKKLQAARQEAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQEGKLTVDQRSMVDTVVKSSSLLSTLINDVLDFSRLEDGSLSLEMRPFELPTVLREAENLAKPMAKGKGLDFFFDINMDVPQCVIGDEKRLLQITLNIIGNAVKFTRLGFVSVSVSLEKYDASIRRDPRNPSWRPIPCDGFVYIRIVVKDTGLGVRENDIPRLFNKFVQADSTTTRQYGGTGLGLAICKKFVQLMNGHIWIESEGINRGSVVTFIVRLQVQSDSAKERGRPSREEQLNKEDLKGLKVLVTDDNSVNRIVTKRLLDRLGCYTTVVESGQQCLAALSQPGSGFRVLLLDLCMPEMDGYEVARIIKQKFR-QGEPLVVALTANTDKNTKERCMQIGMDEVVLKPISLQEMSAVLCKLLH

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
1311	75		25		0.996473
1327		25		75	0.996473
1585	90			10	0.90298
1586		90		10	0.90298
1627			16	83	0.994512
1628			16	83	0.994512
1629		83	16		0.994512
1685	20	80			0.995493
1687		80	20		0.995493
1735	20		80		0.995493
1775			25	75	0.996473
1776		75	25		0.996473
1777			25	75	0.996473
2020	80			20	0.995493
2021	80			20	0.995493
2923	97		2		0.917783
2973		2		97	0.972772
3156	93	6			0.999453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain