SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1938

Length: 3511 nt

UniGene Fasta

>sp_v3.0_unigene1938
CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGAGGCAGGCGAAGATATAAACAGGGAAAACCCATCTCTGCATTTGGAATAAACAACGGGGATAACAGAAATCATGGTTCCCTTGAGCGTAGAATCACCTTTCCGCTAAGCTTTCGGGGTCTTTCTGTTACAAATACAGTGCAAAATAATTTACAGGATTCGTAGTTAAACCGTACCCGTTTCAGCCCATTCAAAGATCTCTTTACGAAATTCTAGGGCATTTTTTTTTTGTTTTCTTAAGGTCGGAGATTGGAGTTCCGGCGAGTGAAGTTTGCGAGGGTTTTGATTTGGATCCGGGGAAGGATCGCGGATTGAAGGGTTTTTTTGAAAAGCGGGTGCTTGGTTGGTCCTGTAATGGAGTCATCACAGGCCACGCACAGGGAAGGCTCTCCGGAAGACGAAGGTCATTTACCTGTAACTGCAACCCTAGCCAAGGAGGCTGCCGCCATGTTTCAAGCAAGGCGTTATCAAGAATGTTTGGATATCCTGAGTCAGCTATCGCAGAAGAAGGAAGACGATCCCAAGGTCCTTCATAATATTGCTGTGGCAGAATACTTTCATGATGGCTGTACAGATCCAAAAAAGCTTCTAGAGGTACTTGACAAGGTTAAGAAGAAGAGTGAGGAACTTGTTCATGCAGCTGGAGACCAGCTTGAAGGCATAATCAGCCCTTCAAATGCTAGCAGTACATTGGTACCTAAAGGAAGTGGTGTTGCTGGTGGACAACAAGCATCTGCATCTTCTAATTCTGATGGTGTTGCTTTTGTGGATGAATATGATACATCTATTGCTACACTTAATACTGCAGTTATCTTATATCATCTTCAGCATTATGCAAGTGCAATGTCTCTACTAGAACCCTTGTACCAAAACATAGAGCCGATAGATGAGACCGCAGCTTTACGCATTTGTCTTCTTATGCTGGATATTGCTTTAGCTTCCCATGAAGCAGCGAAAGCCGCGGATGTGGTGCAATACATGGAAAAGGCTTTTGGATTTGGGCATATGGCCCAATCAGTTGATGGTGGCAGTAATTCAACAAATCAAGCGCCAAAGTCGATTCCAACAACACAAGTGAATTTGGCAGCAACTGAGGGTACTGGCAGCGTAATGACTTCTAATTCCACCAGTTCACCTAGTGCTACAGCCAATGCTGACATCAGTCTTACAAGGACATTATCAGATGAGGCCCTTGACTATGAGACTTTCTTGTCAACCTTAGGCAGTGAAAATCAAAATATTGGAAGGTCTTCTGCTCCTTTATCAATGTCGGGTGACTTAACAAGAATTGCAGTTGAAAAACCACCTCCTACAAGCGACTTGAAGCTTATATTACATCTTTACAAGGTCCGTCTTCTCCTCCTCACAGGGAATCCTAAGGCAACAAAGCGTGAAGTTAAAATGGCTGTGAACATTGCTCGTGGTAGGGATTCTTCAACAGCATTGCTTCTGAAGGCTCAGCTGGAATATTCTCGTGGTAATTATCGCAAAGCTATTAAACTTCTGACAACGTGCAGTAACAGATCAGAGCAAGGGATGCCATGCATGCTATGGAACAATCTTGGTTGTATACATCATCAATTGAAAAAAGACCGTTTAGCGGCTTTATATTTCAAGAAGGCCTATCAGAATAGTGTTTCAATCTGTGCAGAACAGCCACTTAAGCTGGCAAAATTTTCTCAAGATAAATCTCAATCTATCATGTATAACTGTGGTATGCTGCATTTGATTTGTGGAAATCCAAATGTAGCAGCTAAATGCTTTCAACAAGCTTGCAGCCTTTACTACATGAAACCTCTTATATGGATCCGTCTAGCAGAGTGCTGTATTTCGGCCTATGAAAAGGGACTCCTAGAAACACCCGACTCAGATGCATCTATTCGGGAAGATCGATTGAGGGTACAAGTTGTTGGTAATGGGAAATGGCGCCATATTATATTGCAAGATAGGATGTGTAAACCTACTTCAGAACATACTAAATCAGACATGGAACAAGGAGCCCTTGAATTGAAAAATCTTTTGTCTCCAGACGATGGGGTATTCTTTCAGCTTGGTCAACCAGTTAAACTTTCTATGCTATTTGCACGACAGTGCTTGCAAGTTGGATTGTGGCTTCTAAATCGAAATGATGGCAAGGCTGCTAGGCTTGCAGTATTTGGCTTTTCAAGTGAAAAGGGAGATGAAGATTCTAGCCAGACAACTGTAGGAAATAAAAATCTGAATCAAAAGAGTACAGCAGCAGGAGAGTCAAAGGGAGTATCAAACACAACTCCAGGTTTCACAACTTCAGCTAATGGGGATGGCAAGGAATCTAAAGCTAGTTCTGGTTCAAGCAACCCAATCTCTGCTTCTGTTGATGCTTATGAAGAGTTGCGAAGGAAAGAAAACATGGCTGCAAGACAGGCCATTTTGGCAGATCTTGCATATGTAGAGCTCTGCTTGGAAAATCATTTGAAGGCACTTAATACTGCAGAGTCACTTTTGAAGCAGCCAGAGTGTTCAAAAACATATATCTACCTTGGTCATATCTACGCGGCAGAATCATTGTGCCGTCTAAACCGCCCTAAAGAAGCAGCCAAGCATTTGTTAGTTTGCATGGAAGAAGGTGGCAACATTGAACTAGCATTTAATGGTAATGAAGATGGACATAAGTGGAGAAGTGGGGAGAATAGTGAGGCAAGTGGAGATGGTGAAGATATAAGCAGTTCCGTGGTCTGCAATTCCTCATTTGGAAATTCAATTGAGAGTAGTAGCATCTCTCATTTAATCAGTGGGCAGGCACGCACTGCCCTTTATGTAAATCTAGCTGCTGTTTTTGCTATGCAAGGGGACCTTCAACAGGCACATCAATATGCAACACAGGCAGTCTCTCTGACACCTACGAATGTTTTGGCTGTGTTGTCAGTAGTGTACGTGGAACTTTTGCAAGGAAAAACTCAGGAAGCTCTCTCAAAGTTGAAGCAATGTCGGCAACGTGTCATGTCTCCACATGCAGTCTCATGTAGCAGTTGAAATTTGTCTGACCATTGTTGTAATAATGAATTTATTTTCTAACAGGGTCTGTATTGCAATGGCTTTACATGCAGATTGCCAGCAAGGAGCTTACAGGGTTTTGTAACATAGATCATTGATCCCTGAAATAAGACTTGATCAATGCTTGCAGGGTCCTGTTGAGAGTAAGGTGTATTTTCCTTGACTAACTGTTGTAGCTAATCATTGCCAGTTATGTGAGAGAAAACTTGAGCATCCTGTCAAAATGGGTTGCAAAATTCATTAATCAGAATAGTGGCCTAGCTGTTCCATTATATCTTGTTTCTCTTTTCCCCATTTTTTTAAAATTTTTTTCCTAAAGTTCAGAATTTGCATTGAAATCATGTATTTTTAAATGAAACAAATGCTTCTGCAGAATATATCTGATAGATGTTTTTAACTCAATGTTTTGAGTAATAACATCATTGTAGTGAACCCGTTAAATTC

Ace file of the UniGene sp_v3.0_unigene1938

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	46%

Source	Gene names
Sma3	GSVIVT00016960001; MtrDRAFT_AC182813g24v2; Os09g0123100; OsI_30425; OsJ_28413; P0415D04.44; PHYPADRAFT_152285; PHYPADRAFT_225322; POPTRDRAFT_801850; POPTRDRAFT_826006; RCOM_0272140; VITISV_020807; VITISV_029859; VITISV_032821;

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6HHB1

Fln msg:

Fln protein: MESSQATHREGSPEDEGHLPVTATLAKEAAAMFQARRYQECLDILSQLSQKKEDDPKVLHNIAVAEYFHDGCTDPKKLLEVLDKVKKKSEELVHAAGDQLEGIISPSNASSTLVPKGSGVAGGQQASASSNSDGVAFVDEYDTSIATLNTAVILYHLQHYASAMSLLEPLYQNIEPIDETAALRICLLMLDIALASHEAAKAADVVQYMEKAFGFGHMAQSVDGGSNSTNQAPKSIPTTQVNLAATEGTGSVMTSNSTSSPSATANADISLTRTLSDEALDYETFLSTLGSENQNIGRSSAPLSMSGDLTRIAVEKPPPTSDLKLILHLYKVRLLLLTGNPKATKREVKMAVNIARGRDSSTALLLKAQLEYSRGNYRKAIKLLTTCSNRSEQGMPCMLWNNLGCIHHQLKKDRLAALYFKKAYQNSVSICAEQPLKLAKFSQDKSQSIMYNCGMLHLICGNPNVAAKCFQQACSLYYMKPLIWIRLAECCISAYEKGLLETPDSDASIREDRLRVQVVGNGKWRHIILQDRMCKPTSEHTKSDMEQGALELKNLLSPDDGVFFQLGQPVKLSMLFARQCLQVGLWLLNRNDGKAARLAVFGFSSEKGDEDSSQTTVGNKNLNQKSTAAGESKGVSNTTPGFTTSANGDGKESKASSGSSNPISASVDAYEELRRKENMAARQAILADLAYVELCLENHLKALNTAESLLKQPECSKTYIYLGHIYAAESLCRLNRPKEAAKHLLVCMEEGGNIELAFNGNEDGHKWRSGENSEASGDGEDISSSVVCNSSFGNSIESSSISHLISGQARTALYVNLAAVFAMQGDLQQAHQYATQAVSLTPTNVLAVLSVVYVELLQGKTQEALSKLKQCRQRVMSPHAVSCSS*

Protein Length: 887

Fln nts: CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGAGGCAGGCGAAGATATAAACAGGGAAAACCCATCTCTGCATTTGGAATAAACAACGGGGATAACAGAAATCATGGTTCCCTTGAGCGTAGAATCACCTTTCCGCTAAGCTTTCGGGGTCTTTCTGTTACAAATACAGTGCAAAATAATTTACAGGATTCGTAGTTAAACCGTACCCGTTTCAGCCCATTCAAAGATCTCTTTACGAAATTCTAGGGCATTTTTTTTTTGTTTTCTTAAGGTCGGAGATTGGAGTTCCGGCGAGTGAAGTTTGCGAGGGTTTTGATTTGGATCCGGGGAAGGATCGCGGATTGAAGGGTTTTTTTGAAAAGCGGGTGCTTGGTTGGTCCTGTA_-_ATGGAGTCATCACAGGCCACGCACAGGGAAGGCTCTCCGGAAGACGAAGGTCATTTACCTGTAACTGCAACCCTAGCCAAGGAGGCTGCCGCCATGTTTCAAGCAAGGCGTTATCAAGAATGTTTGGATATCCTGAGTCAGCTATCGCAGAAGAAGGAAGACGATCCCAAGGTCCTTCATAATATTGCTGTGGCAGAATACTTTCATGATGGCTGTACAGATCCAAAAAAGCTTCTAGAGGTACTTGACAAGGTTAAGAAGAAGAGTGAGGAACTTGTTCATGCAGCTGGAGACCAGCTTGAAGGCATAATCAGCCCTTCAAATGCTAGCAGTACATTGGTACCTAAAGGAAGTGGTGTTGCTGGTGGACAACAAGCATCTGCATCTTCTAATTCTGATGGTGTTGCTTTTGTGGATGAATATGATACATCTATTGCTACACTTAATACTGCAGTTATCTTATATCATCTTCAGCATTATGCAAGTGCAATGTCTCTACTAGAACCCTTGTACCAAAACATAGAGCCGATAGATGAGACCGCAGCTTTACGCATTTGTCTTCTTATGCTGGATATTGCTTTAGCTTCCCATGAAGCAGCGAAAGCCGCGGATGTGGTGCAATACATGGAAAAGGCTTTTGGATTTGGGCATATGGCCCAATCAGTTGATGGTGGCAGTAATTCAACAAATCAAGCGCCAAAGTCGATTCCAACAACACAAGTGAATTTGGCAGCAACTGAGGGTACTGGCAGCGTAATGACTTCTAATTCCACCAGTTCACCTAGTGCTACAGCCAATGCTGACATCAGTCTTACAAGGACATTATCAGATGAGGCCCTTGACTATGAGACTTTCTTGTCAACCTTAGGCAGTGAAAATCAAAATATTGGAAGGTCTTCTGCTCCTTTATCAATGTCGGGTGACTTAACAAGAATTGCAGTTGAAAAACCACCTCCTACAAGCGACTTGAAGCTTATATTACATCTTTACAAGGTCCGTCTTCTCCTCCTCACAGGGAATCCTAAGGCAACAAAGCGTGAAGTTAAAATGGCTGTGAACATTGCTCGTGGTAGGGATTCTTCAACAGCATTGCTTCTGAAGGCTCAGCTGGAATATTCTCGTGGTAATTATCGCAAAGCTATTAAACTTCTGACAACGTGCAGTAACAGATCAGAGCAAGGGATGCCATGCATGCTATGGAACAATCTTGGTTGTATACATCATCAATTGAAAAAAGACCGTTTAGCGGCTTTATATTTCAAGAAGGCCTATCAGAATAGTGTTTCAATCTGTGCAGAACAGCCACTTAAGCTGGCAAAATTTTCTCAAGATAAATCTCAATCTATCATGTATAACTGTGGTATGCTGCATTTGATTTGTGGAAATCCAAATGTAGCAGCTAAATGCTTTCAACAAGCTTGCAGCCTTTACTACATGAAACCTCTTATATGGATCCGTCTAGCAGAGTGCTGTATTTCGGCCTATGAAAAGGGACTCCTAGAAACACCCGACTCAGATGCATCTATTCGGGAAGATCGATTGAGGGTACAAGTTGTTGGTAATGGGAAATGGCGCCATATTATATTGCAAGATAGGATGTGTAAACCTACTTCAGAACATACTAAATCAGACATGGAACAAGGAGCCCTTGAATTGAAAAATCTTTTGTCTCCAGACGATGGGGTATTCTTTCAGCTTGGTCAACCAGTTAAACTTTCTATGCTATTTGCACGACAGTGCTTGCAAGTTGGATTGTGGCTTCTAAATCGAAATGATGGCAAGGCTGCTAGGCTTGCAGTATTTGGCTTTTCAAGTGAAAAGGGAGATGAAGATTCTAGCCAGACAACTGTAGGAAATAAAAATCTGAATCAAAAGAGTACAGCAGCAGGAGAGTCAAAGGGAGTATCAAACACAACTCCAGGTTTCACAACTTCAGCTAATGGGGATGGCAAGGAATCTAAAGCTAGTTCTGGTTCAAGCAACCCAATCTCTGCTTCTGTTGATGCTTATGAAGAGTTGCGAAGGAAAGAAAACATGGCTGCAAGACAGGCCATTTTGGCAGATCTTGCATATGTAGAGCTCTGCTTGGAAAATCATTTGAAGGCACTTAATACTGCAGAGTCACTTTTGAAGCAGCCAGAGTGTTCAAAAACATATATCTACCTTGGTCATATCTACGCGGCAGAATCATTGTGCCGTCTAAACCGCCCTAAAGAAGCAGCCAAGCATTTGTTAGTTTGCATGGAAGAAGGTGGCAACATTGAACTAGCATTTAATGGTAATGAAGATGGACATAAGTGGAGAAGTGGGGAGAATAGTGAGGCAAGTGGAGATGGTGAAGATATAAGCAGTTCCGTGGTCTGCAATTCCTCATTTGGAAATTCAATTGAGAGTAGTAGCATCTCTCATTTAATCAGTGGGCAGGCACGCACTGCCCTTTATGTAAATCTAGCTGCTGTTTTTGCTATGCAAGGGGACCTTCAACAGGCACATCAATATGCAACACAGGCAGTCTCTCTGACACCTACGAATGTTTTGGCTGTGTTGTCAGTAGTGTACGTGGAACTTTTGCAAGGAAAAACTCAGGAAGCTCTCTCAAAGTTGAAGCAATGTCGGCAACGTGTCATGTCTCCACATGCAGTCTCATGTAGCAGTTGA___AATTTGTCTGACCATTGTTGTAATAATGAATTTATTTTCTAACAGGGTCTGTATTGCAATGGCTTTACATGCAGATTGCCAGCAAGGAGCTTACAGGGTTTTGTAACATAGATCATTGATCCCTGAAATAAGACTTGATCAATGCTTGCAGGGTCCTGTTGAGAGTAAGGTGTATTTTCCTTGACTAACTGTTGTAGCTAATCATTGCCAGTTATGTGAGAGAAAACTTGAGCATCCTGTCAAAATGGGTTGCAAAATTCATTAATCAGAATAGTGGCCTAGCTGTTCCATTATATCTTGTTTCTCTTTTCCCCATTTTTTTAAAATTTTTTTCCTAAAGTTCAGAATTTGCATTGAAATCATGTATTTTTAAATGAAACAAATGCTTCTGCAGAATATATCTGATAGATGTTTTTAACTCAATGTTTTGAGTAATAACATCATTGTAGTGAACCCGTTAAATTC

Fln Alignment:

Contig1938___SSQATHREGSPEDEGHLPVTATLAKEAAAMFQARRYQECLDILSQLSQKKEDDPKVLHNIAVAEYFHDGCTDPXXXXXXXXXXXXXXXXXXHAAGDQLEGIISPSNASSTLVPKXXXXXXXXXXXXXXXXXXVAFVDEYDTSIATLNTAVILYHLQHYASAMSLLEPLYQNIEPIDETAALRICLLMLDIALASHEAAKAADVVQYMEKAFGFGHMAQSVDGGSNSTNQAPKSIPTTQVNLAATEGTGSVMXXXXXXXXXXXXXXDISLTRTLSDEALDYETFLSTLGSENQNIGRSSAPLSMSGDLTRIAVEKPPPTSDLKLILHLYKVRLLLLTGNPKATKREVKMAVNIARGRDSSTALLLKAQLEYSRGNYRKAIKLLTTCSNRSEQGMPCMLWNNLGCIHHQLKKDRLAALYFKKAYQNSVSICAEQPLKLAKFSQDKSQSIMYNCGMLHLICGNPNVAAKCFQQACSLYYMKPLIWIRLAECCISAYEKGLLETPDSDASIREDRLRVQVVGNGKWRHIILQDRMCKPTSEHTKSDMEQGALELKNLLSPDDGVFFQLGQPVKLSMLFARQCLQVGLWLLNRNDGKAARLAVFGFSSEKG-DEDSSQTTVGNKNLNQKSTAAGESKGVSNTTPGF-TTSANGDGKEXXXXXXXXXXXXXXVDAYEELRRKENMAARQAILADLAYVELCLENHLKALNTAESLLKQPECSKTYIYLGHIYAAESLCRLNRPKEAAKHLLVCMEEGGNIELAFNGNEDGHKWRSGENSEASGDGEDISSSVVCNXXXXXXXXXXXXXXXXXGQARTALYVNLAAVFAMQGDLQQAHQYATQAVSLTPTNVLAVLSVVYVELLQGKTQEALSKLKQCR--QRVMSPHAVSCSS
F6HHB1______________SSAATRDGASPDDDAGLSVAASLAKDAALLFQSRKFSECLDVLNQLLQKKEDDPKVLHNIAIAEYFRDGCSDPKKLLEVLNNVKKRSEELAHASGENAEAATNLGNKVGS-----KGTNTMALQFSAASSGSMVYTDEFDTSVATLNLAIVWFHLHEYGKALSVLESLYQNIEPIDETTALHICLLLLDVALASHDVSRCAEIINYLEKAFCVGYTASQGDNVSTAQQQSSNLV----VKSSSIPSNSTVPDASNSDSVASLNSSENPLSRTLSEETLDYETMFSALDIGGQNLTRPAGLPSLN-DLSRAPADRSIPTVDLKLKLQLYKVRILLLTRNLKAAKREVKQAMNIARGRDSSMALLLKSELEYARGNHRKAIKLLMASSNQSEMGISSIFNNNLGCIHYQLGKHHTSTIFFSKALSGSSSLKKEKTPKLSSFSQDKSLLIIYNCGVQYLACGKPILAARCFQKASLVFYNSPLLWLRIAECCLMALEKGVLESSGSPSDRSE--VRIHVIGKGKWRQLVLENGISR--NGHANS------VEKGDWLLGDD------RQP-KLSMSLARQCLLNALHLL---DCSASKFAKFGLSSESTLQENESSEVVSAKNSNHKNLAGSDSK-ASNITVGLGQVNANGDAKE-QKGGPSLTILQSSIAVYEDICRRENQMIKQATLANLAYVELELQNPLKALSTAWSLLKLPDCSRIFTFLGHVYAAEALCLLNRPKEASDHLSTYLSGGNNVELPYS-EEDREQWR----AEKTMDCEEVNGGSLTGKNPSLEDLQGITFLKPE-EARGTLYANLATMSAMQGELEQARQFVKQALSIIPNSSEVILTAVYVDLVHGKTQEALAKLKQCSHVRFLASSSQLTCSS

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
2301		88		11	0.923564
2308	11	88			0.923564
2404		16	83		0.994512
2487			14	85	0.993533
2489		14		85	0.993533
2491	85			14	0.993533
2492	85	14			0.993533
2494			85	14	0.993533
2495		85		14	0.993533
2628		10		90	0.90298
3343	88		11		0.923564
3371	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain