SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1933

Length: 1996 nt

UniGene Fasta

>sp_v3.0_unigene1933
GCGAACCGGGCTGATCATACGCGCAACCGAATGGTGAAGGTGCCTCTAAATATCACGGTGAAAAGTTCACACATTATTTTTGCTTTTCGTAAAGGCGCGGGCGCATACTTTGTCCCTAACGTTTATCAGTTTGGCCGACCTATCGAATCTAAATACGTTGCAGCCCTCGGAGTTTCGTGTTCATGTAGCCCTGTCGGTCGATAACTCTGGCTGACGATAATAACATTCAGATGACTATAAAAGTTACATTATTTTTGCTTTTCGTAAAGGTGAGGGCTCATATTTTGACCCTAACGATTTTCGCTTTGGCCGACCGTCAAATCTAAATACGCTGCAGCTCTTCGGAGTTTCTTGTTCATGTAGTCTTCTCGGTCGATAACTATGGTTGATGATAACATCCAGATGACTACAAGCAACTGCAGCTTTTAAAAACCATGGAAAATTCTCATTTTATCTCGAATAACTGAATATCATTCACTTATCTCATCCAGCCTCTCCGCAGTGGAATTCTCTTCAACAATTGTGTCAGGTGAGCCACGCTGCATAAACAGAAGAGATTGGAGGAAGCCGTATAATTTTGTCCACACCGGTCATTGGAAATGTCAAAGACAATAGTACAGCCCGTTGGGCAAAAAAGATTAACGAACGTGGCCGTAGTTCGCTTGAAGAAACACGGAATGCGTTTTGAAATTGCTTGTTACAAGAATAAAGTGCTCTCATGGCGGTCAGGAGTAGAGAAGGATTTGGATGAGGTGCTGCAGTCTCATACAGTGTATTCAAATGTCTCCAAAGGAATTCTGGCAAAATCTAAGGACTTGATAAAATCTTTTGGAACAGATGATCATGAAAATATATGTTTGGAGGTTCTTAATAAAGGTGAGCTCCAAATTGCGGGAAAGGAGAGAGAATCTCAGTTATCAAGCCAGTTCCGTGACATTGCAACAATTGTGATGGAGAAGACAATCAACCCTGAGACTGATCGGCCATATACAATCAACATGATTGAACGCCTAATGCACGAAGTCCATTTTGCTGTAGATCCTCACAAAAGTTCAAAGCAACAGGCTCTGGATCTTATTCGGGAGCTCCAAAAGCATTTTCCCATAAAAAGATCACCAATGAGGTTGCGACTTGTAATCCCTGAGATTCAGGAAGCCAATTTCTTGCAGAAAATTCAAACCTGGAGTCCTTGCATCGTGTCCAAAGAGGTCTCTGGTAATCAGCTGTCTATGGTTTGTCAGATTGAACCTGGTTACTTCCGAGATTGTGATGGCGTAGTACGAGATTGTAAAGGGAGGCTTGAAATTCTCTCTGCGCCTGTACACAAGGAGGAAGATGTGGAGGAAGATGTAAGAGTTCTTGGGGATAACAATCAAGAAGCTTTGACAGAAAATATTCACAATTTGGAACTAGGCAGAAGTGAATCAGAAAGTCAAGTCAAAAGATTGGCAAAAAGTATGAACAATGCTACTCTTGGAGATAATAGTTCTTCAAATGCAAAGCTTGGTACTGGGAAAGTACCTGGTGTTGAAGGCACAGCAATTAATCAAGAAGAGAAGAGGCAACAAAAATGCACAACTTGCAATGCCAATGTAGGTGATGCAAAGCAATACCGAGATCATTTTAAGAGTGACTGGCACAAGCATAATCTGAAACGGAAAATGAAGCAACTTCCACCCCTATCTCCAGAGGAGTGTTTAGTTGACAGAGAAGTAATCGATGTGCGAAAGGATTTAGGTGATTATTCTTTTTGAAAAAATGTTATGTATAACAGGTGATGGCTTTCCTACATTTGTTAGAAATATAATTAGTTTTGAATAGATTGTTCAGTATTCAAACACAATCTGAAGTTGGAACATTGTTTGGCAACATAAAATTAGTATAGAAAGTATGGAGGTTATTAGTATCTCTATAAAATGTTGAGTTGTGAAGTCTGGTCCGTTGACACTATTTAATATAAATATCTGAGTGAAATGCATGATTTGTGAATTGCTTA

Ace file of the UniGene sp_v3.0_unigene1933

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Shwachman-Bodian-Diamond syndrome protein, putative n=1 Tax=Ricinus communis RepID=B9S2M8_RICCO	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosome maturation protein SBDS, C-terminal	IPR018978	-	-
Sma3	Ribosome maturation protein SBDS, conserved site	IPR018023	-	-
Sma3	Ribosome maturation protein SBDS, N-terminal	IPR019783	-	-
Sma3	Ribosome maturation protein SBDS	IPR002140	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G43860.1	sequence-specific DNA binding transcription factors chr1:16622244-16624385 REVERSE LENGTH=370	61%
RefSeq	Arabidopsis thaliana	NP_564488.1	sequence-specific DNA binding transcription factor [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002302200.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNC3

Fln msg:

Fln protein: MSKTIVQPVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSGVEKDLDEVLQSHTVYSNVSKGILAKSKDLIKSFGTDDHENICLEVLNKGELQIAGKERESQLSSQFRDIATIVMEKTINPETDRPYTINMIERLMHEVHFAVDPHKSSKQQALDLIRELQKHFPIKRSPMRLRLVIPEIQEANFLQKIQTWSPCIVSKEVSGNQLSMVCQIEPGYFRDCDGVVRDCKGRLEILSAPVHKEEDVEEDVRVLGDNNQEALTENIHNLELGRSESESQVKRLAKSMNNATLGDNSSSNAKLGTGKVPGVEGTAINQEEKRQQKCTTCNANVGDAKQYRDHFKSDWHKHNLKRKMKQLPPLSPEECLVDREVIDVRKDLGDYSF*

Protein Length: 386

Fln nts: GCGAACCGGGCTGATCATACGCGCAACCGAATGGTGAAGGTGCCTCTAAATATCACGGTGAAAAGTTCACACATTATTTTTGCTTTTCGTAAAGGCGCGGGCGCATACTTTGTCCCTAACGTTTATCAGTTTGGCCGACCTATCGAATCTAAATACGTTGCAGCCCTCGGAGTTTCGTGTTCATGTAGCCCTGTCGGTCGATAACTCTGGCTGACGATAATAACATTCAGATGACTATAAAAGTTACATTATTTTTGCTTTTCGTAAAGGTGAGGGCTCATATTTTGACCCTAACGATTTTCGCTTTGGCCGACCGTCAAATCTAAATACGCTGCAGCTCTTCGGAGTTTCTTGTTCATGTAGTCTTCTCGGTCGATAACTATGGTTGATGATAACATCCAGATGACTACAAGCAACTGCAGCTTTTAAAAACCATGGAAAATTCTCATTTTATCTCGAATAACTGAATATCATTCACTTATCTCATCCAGCCTCTCCGCAGTGGAATTCTCTTCAACAATTGTGTCAGGTGAGCCACGCTGCATAAACAGAAGAGATTGGAGGAAGCCGTATAATTTTGTCCACACCGGTCATTGGAA_-_ATGTCAAAGACAATAGTACAGCCCGTTGGGCAAAAAAGATTAACGAACGTGGCCGTAGTTCGCTTGAAGAAACACGGAATGCGTTTTGAAATTGCTTGTTACAAGAATAAAGTGCTCTCATGGCGGTCAGGAGTAGAGAAGGATTTGGATGAGGTGCTGCAGTCTCATACAGTGTATTCAAATGTCTCCAAAGGAATTCTGGCAAAATCTAAGGACTTGATAAAATCTTTTGGAACAGATGATCATGAAAATATATGTTTGGAGGTTCTTAATAAAGGTGAGCTCCAAATTGCGGGAAAGGAGAGAGAATCTCAGTTATCAAGCCAGTTCCGTGACATTGCAACAATTGTGATGGAGAAGACAATCAACCCTGAGACTGATCGGCCATATACAATCAACATGATTGAACGCCTAATGCACGAAGTCCATTTTGCTGTAGATCCTCACAAAAGTTCAAAGCAACAGGCTCTGGATCTTATTCGGGAGCTCCAAAAGCATTTTCCCATAAAAAGATCACCAATGAGGTTGCGACTTGTAATCCCTGAGATTCAGGAAGCCAATTTCTTGCAGAAAATTCAAACCTGGAGTCCTTGCATCGTGTCCAAAGAGGTCTCTGGTAATCAGCTGTCTATGGTTTGTCAGATTGAACCTGGTTACTTCCGAGATTGTGATGGCGTAGTACGAGATTGTAAAGGGAGGCTTGAAATTCTCTCTGCGCCTGTACACAAGGAGGAAGATGTGGAGGAAGATGTAAGAGTTCTTGGGGATAACAATCAAGAAGCTTTGACAGAAAATATTCACAATTTGGAACTAGGCAGAAGTGAATCAGAAAGTCAAGTCAAAAGATTGGCAAAAAGTATGAACAATGCTACTCTTGGAGATAATAGTTCTTCAAATGCAAAGCTTGGTACTGGGAAAGTACCTGGTGTTGAAGGCACAGCAATTAATCAAGAAGAGAAGAGGCAACAAAAATGCACAACTTGCAATGCCAATGTAGGTGATGCAAAGCAATACCGAGATCATTTTAAGAGTGACTGGCACAAGCATAATCTGAAACGGAAAATGAAGCAACTTCCACCCCTATCTCCAGAGGAGTGTTTAGTTGACAGAGAAGTAATCGATGTGCGAAAGGATTTAGGTGATTATTCTTTTTGA___AAAAATGTTATGTATAACAGGTGATGGCTTTCCTACATTTGTTAGAAATATAATTAGTTTTGAATAGATTGTTCAGTATTCAAACACAATCTGAAGTTGGAACATTGTTTGGCAACATAAAATTAGTATAGAAAGTATGGAGGTTATTAGTATCTCTATAAAATGTTGAGTTGTGAAGTCTGGTCCGTTGACACTATTTAATATAAATATCTGAGTGAAATGCATGATTTGTGAATTGCTTA

Fln Alignment:

Contig1933___MSKTIVQPVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSGVEKDLDEVLQSHTVYSNVSKGILAKSKDLIKSFGTDDHENICLEVLNKGELQIAGKERESQLSSQFRDIATIVMEKTINPETDRPYTINMIERLMHEVHFAVDPHKSSKQQALDLIRELQKHFPIKRSPMRLRLVIPEIQEANFLQKIQTWSPCIVSKEVSGNQLSMVCQIEPGYFRDCDGVVRDCKGRLEILSAPVHKEEDVEEDVRVLGDNNQEALTENIHNLELGRSESESQVKRLAKSMNNATLGDNSSSNAKLGTGKVPGVEGTAINQEEKRQQKCTTCNANVGDAKQYRDHFKSDWHKHNLKRKMKQLPPLSPEECLVDREVIDVRKDLGDYSF
A9NNC3______________MSKLILQPVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSGVETDLDEVLQSHTVYSNVSKGILAKSKDLIKSFGTDDQEKICSEVLNKGELQIAGKERESQLSSQFRDIATIVMEKTINPETDRPYTINMIERLMHEVHFAVDPHKISKQQALDLIRELQKHFPIKRSPMRLRLIIPEIQEANFLQKLQTWNPCIVSKEVSGNQLSMVCQIEPGYFRDCDGLVRDCKGRLEILSVPVHKEEDVRVEV----DDGEEALTGNLHNLELGRSESESRVKRLAESMNKTTLGDNSSSNGKLGTGKGAGVEGTAINHEEKRQQKCTTCNANVGDAKQYRDHFKSDWHKHNLKRKMKQLPPLSPEECLVDREVIDVRKDLGDYSF

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
362		50		50	1.0
385	50	50			1.0
458	16	83			0.994512
538		80		20	0.999996
542			80	20	0.999996
585		66	33		1.0
653	20		80		0.995493
659	80			20	0.995493
1049		75		25	0.996473
1118	66		33		0.997452
1467		88		11	0.923564
1468	88		11		0.923564
1469	88			11	0.923564
1593	14	85			0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain