SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1926

Length: 2124 nt

UniGene Fasta

>sp_v3.0_unigene1926
TACCACTGCTTAAGCAGTGGCATCAACACAGAGGACGCGGAGTGTGTTCGTTGGTGCATCTGGTCGTTCTTTCTTTCCATTGAGCGTTCCTTAGTTTCGAACTCGCGACCATGGTGAAGATCTGCTGCATCGGGGCAGGGTACGTGGGCGGGCCGACGATGGCCATGATCGCACTCAAGTGCCCGGAGATCGAAGTGGTAGTGGTGGACATCTCTGTATCGCGTATCAACGCCTGGAATAGCGACCGCCTGCCGATATTCGAACCCGGGCTGGAGGAGGTCGTCCGGCACTGCCGCGGCAAGAATCTCTTCTTCAGCTCCGACGTCGAGAAACACGTTGCGGAAGCGGAGATAGTGTTCGTCTCCGTCAACACGCCTACCAAGACCCGTGGGCTCGGCGCCGGCAAGGCAGCCGACCTGACCTACTGGGAATCGGCCGCCCGGATGATCGCGGACGTGTCGAAGTCGGACAAGATTGTTGTGGAGAAATCGACGGTGCCGGTAAAAACCGCAGAAGCGATCGAGAAGATTCTCACCCACAACAACAAGGGGATCCACTTTCAGATATTATCTAACCCCGAATTTCTGGCCGAGGGGACCGCCATTGAAGATCTGGAGAAGCCCGACAGGGTTTTGATAGGCGGGCGGGAGACCGCAGAGGGCCAGAAGGCCGTCGCGGCGCTGAAGGCGGTTTATGCTCACTGGGTACCGGAGGACCGAATCATAACCATGAATCTCTGGTCCGCTGAGCTCTCGAAGCTGGCCGCGAATGCTTTCTTGGCGCAGAGGATTTCGTCCGTGAATGCCATGTCCGCCCTCTGCGAGGCCACAGGGGCCGACGTGGCTGAAGTCGCATATGCTGTGGGGAAAGATTCTCGGATCGGACCCCGGTTTCTGAATGCCAGTGTTGGATTCGGCGGGTCGTGCTTTCAGAAAGATATCTTGAATTTGGTGTACATCTGTGAATGCAATGGGCTGTCGGATGTGGCCAATTACTGGAAGCAGGTTGTTCATATCAATGATTACCAGAAGAGCAGGTTTGTGAACAGGGTCGTGTCATCGATGTTCAATACCGTGTCGGGCAAGAAGATTGCGGTCTTAGGGTTTGCGTTCAAGAAAGATACCGGGGATACTAGAGAAACTGCTGCCATTGATGTCTGCCATGGGTTGCTGGGGGACAGGGCACAGCTGAGCATCTACGATCCGCAGGTAACAGAGGATCAGATCCGGAGGGATCTTGCCATGAACAAGTTCGATTGGGATCACCCTCAGCATCTTGTGCCCAGCAGTCCCACCGCCTCCAAGCAGATCAGTGTTGTGTGGGATGCTTATGAGGCCACCAAGAATGCTCACGGGGTCTGTATTCTCACTGAATGGGATGAGTTCAAGAACCTGGATTATGATAAGATCTATGAGAATATGGAGAAACCCGCCTTCGTATTCGATGGTCGCAATGTCGTAGATGCCGAGAGGCTGAGGAAGATTGGGTTTATTGTGTACTCAGTTGGGAAGCCTCTGGATCCATGGATCAAGGATCTTCCTGCCGCACCTTCAAGTTGAGAGGCTCAGGGGACGGTAATTCTGATATCTGCTGTTAATTCAATTGAAATAAGCACAACTAATCTTGGTACACACCCTTTGGTAATTCTGGTATCCATTCAATTGGGATCTGAGTCCTAGCATTCATAGTACATGCCGTATAATTTTGGTATCTGTTCAATTTTTCCTTTTAAAAGCGTCTTTGAACTTCATTTCTTGGAGTTATCTTGGCAATTCAAGTATTGAGTGAATCTGAATTTCATTCTGAATGATTGGTGGTTGTCTTTTACTTGTCATGAGTAATTTGATCATCTTCCGTCATTTGATGAGGAAAGATTGATGCAAAGATAATGCAAGAGGCAGAGCATTTTGTTTGGTATAGTAAGTTTTTTTGTGTACTGTAATTTTATTTTTACGAGCAACATGATCTACTTCCATCCATCAATTGATGAGGAGATGTGATGCATTTCCATCTCTATTGATGAGGAAAGATAATGCAAGAAAATATGATGCATTTCCATCATGAAAGATAATACAAGAGGCAGAACATTTTGTTTGGTATAGCAAACATTGTGTTGGCTTGTCT

Ace file of the UniGene sp_v3.0_unigene1926

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	UDP-glucose 6-dehydrogenase, putative n=4 Tax=Magnoliophyta RepID=B9REG0_RICCO	-	-	83%
FL-Next	sp=UDP-glucose 6-dehydrogenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Dehydrogenase, multihelical	IPR013328	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Nucleotide sugar dehydrogenase	IPR017476	-	-
Sma3	UDP-glucose/GDP-mannose dehydrogenase, C-terminal	IPR014027	-	-
Sma3	UDP-glucose/GDP-mannose dehydrogenase, dimerisation	IPR014026	-	-
Sma3		IPR014028	-	-
Sma3	UDP-glucose/GDP-mannose dehydrogenase, N-terminal	IPR001732	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G15490.1	UDP-glucose 6-dehydrogenase family protein chr5:5027872-5029314 REVERSE LENGTH=480	84%
RefSeq	Arabidopsis thaliana	NP_197053.1	UDPglucose 6-dehydrogenase [Arabidopsis thaliana]	84%
RefSeq	Populus trichocarpa	XP_002324103.1	predicted protein [Populus trichocarpa]	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPB2

Fln msg:

Fln protein: MVKICCIGAGYVGGPTMAMIALKCPEIEVVVVDISVSRINAWNSDRLPIFEPGLEEVVRHCRGKNLFFSSDVEKHVAEAEIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNNKGIHFQILSNPEFLAEGTAIEDLEKPDRVLIGGRETAEGQKAVAALKAVYAHWVPEDRIITMNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVAEVAYAVGKDSRIGPRFLNASVGFGGSCFQKDILNLVYICECNGLSDVANYWKQVVHINDYQKSRFVNRVVSSMFNTVSGKKIAVLGFAFKKDTGDTRETAAIDVCHGLLGDRAQLSIYDPQVTEDQIRRDLAMNKFDWDHPQHLVPSSPTASKQISVVWDAYEATKNAHGVCILTEWDEFKNLDYDKIYENMEKPAFVFDGRNVVDAERLRKIGFIVYSVGKPLDPWIKDLPAAPSS*

Protein Length: 484

Fln nts: TACCACTGCTTAAGCAGTGGCATCAACACAGAGGACGCGGAGTGTGTTCGTTGGTGCATCTGGTCGTTCTTTCTTTCCATTGAGCGTTCCTTAGTTTCGAACTCGCGACC_-_ATGGTGAAGATCTGCTGCATCGGGGCAGGGTACGTGGGCGGGCCGACGATGGCCATGATCGCACTCAAGTGCCCGGAGATCGAAGTGGTAGTGGTGGACATCTCTGTATCGCGTATCAACGCCTGGAATAGCGACCGCCTGCCGATATTCGAACCCGGGCTGGAGGAGGTCGTCCGGCACTGCCGCGGCAAGAATCTCTTCTTCAGCTCCGACGTCGAGAAACACGTTGCGGAAGCGGAGATAGTGTTCGTCTCCGTCAACACGCCTACCAAGACCCGTGGGCTCGGCGCCGGCAAGGCAGCCGACCTGACCTACTGGGAATCGGCCGCCCGGATGATCGCGGACGTGTCGAAGTCGGACAAGATTGTTGTGGAGAAATCGACGGTGCCGGTAAAAACCGCAGAAGCGATCGAGAAGATTCTCACCCACAACAACAAGGGGATCCACTTTCAGATATTATCTAACCCCGAATTTCTGGCCGAGGGGACCGCCATTGAAGATCTGGAGAAGCCCGACAGGGTTTTGATAGGCGGGCGGGAGACCGCAGAGGGCCAGAAGGCCGTCGCGGCGCTGAAGGCGGTTTATGCTCACTGGGTACCGGAGGACCGAATCATAACCATGAATCTCTGGTCCGCTGAGCTCTCGAAGCTGGCCGCGAATGCTTTCTTGGCGCAGAGGATTTCGTCCGTGAATGCCATGTCCGCCCTCTGCGAGGCCACAGGGGCCGACGTGGCTGAAGTCGCATATGCTGTGGGGAAAGATTCTCGGATCGGACCCCGGTTTCTGAATGCCAGTGTTGGATTCGGCGGGTCGTGCTTTCAGAAAGATATCTTGAATTTGGTGTACATCTGTGAATGCAATGGGCTGTCGGATGTGGCCAATTACTGGAAGCAGGTTGTTCATATCAATGATTACCAGAAGAGCAGGTTTGTGAACAGGGTCGTGTCATCGATGTTCAATACCGTGTCGGGCAAGAAGATTGCGGTCTTAGGGTTTGCGTTCAAGAAAGATACCGGGGATACTAGAGAAACTGCTGCCATTGATGTCTGCCATGGGTTGCTGGGGGACAGGGCACAGCTGAGCATCTACGATCCGCAGGTAACAGAGGATCAGATCCGGAGGGATCTTGCCATGAACAAGTTCGATTGGGATCACCCTCAGCATCTTGTGCCCAGCAGTCCCACCGCCTCCAAGCAGATCAGTGTTGTGTGGGATGCTTATGAGGCCACCAAGAATGCTCACGGGGTCTGTATTCTCACTGAATGGGATGAGTTCAAGAACCTGGATTATGATAAGATCTATGAGAATATGGAGAAACCCGCCTTCGTATTCGATGGTCGCAATGTCGTAGATGCCGAGAGGCTGAGGAAGATTGGGTTTATTGTGTACTCAGTTGGGAAGCCTCTGGATCCATGGATCAAGGATCTTCCTGCCGCACCTTCAAGTTGA___GAGGCTCAGGGGACGGTAATTCTGATATCTGCTGTTAATTCAATTGAAATAAGCACAACTAATCTTGGTACACACCCTTTGGTAATTCTGGTATCCATTCAATTGGGATCTGAGTCCTAGCATTCATAGTACATGCCGTATAATTTTGGTATCTGTTCAATTTTTCCTTTTAAAAGCGTCTTTGAACTTCATTTCTTGGAGTTATCTTGGCAATTCAAGTATTGAGTGAATCTGAATTTCATTCTGAATGATTGGTGGTTGTCTTTTACTTGTCATGAGTAATTTGATCATCTTCCGTCATTTGATGAGGAAAGATTGATGCAAAGATAATGCAAGAGGCAGAGCATTTTGTTTGGTATAGTAAGTTTTTTTGTGTACTGTAATTTTATTTTTACGAGCAACATGATCTACTTCCATCCATCAATTGATGAGGAGATGTGATGCATTTCCATCTCTATTGATGAGGAAAGATAATGCAAGAAAATATGATGCATTTCCATCATGAAAGATAATACAAGAGGCAGAACATTTTGTTTGGTATAGCAAACATTGTGTTGGCTTGTCT

Fln Alignment:

Contig1926___MVKICCIGAGYVGGPTMAMIALKCPXXXXXXXXXXXXRINAWNSDRLPIFEPGLEEVVRHCRGKNLFFSSDVEKHVAEAEIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNNKGIHFQILSNPEFLAEGTAIEDLEKPDRVLIGGRETAEGQKAVAALKAVYAHWVPEDRIITMNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVAEVAYAVGKDSRIGPRFLNASVGFGGSCFQKDILNLVYICECNGLSDVANYWKQVVHINDYQKSRFVNRVVSSMFNTVSGKKIAVLGFAFKKDTGDTRETAAIDVCHGLLGDRAQLSIYDPQVTEDQIRRDLAMNKFDWDHPQHLVPSSPTASKQISVVWDAYEATKNAHGVCILTEWDEFKNLDYDKIYENMEKPAFVFDGRNVVDAERLRKIGFIVYSVGKPLDPWIKDLPAAPSS
B8LPB2______________MVKICCIGAGYVGGPTMAMIAFKCPEIEVVVVDISVSRINAWNSDRLPIFEPGLEEVVRVCRGKNLFFSSDVEKHVAEAEIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNNKGIHFQILSNPEFLAEGTAIEDLEKPDRVLIGGRETAEGQKAVAALKAVYAHWVPDDRIITMNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVAEVAYAVGKDSRIGPRFLNASVGFGGSCFQKDILNLVYICECNGLSDVANYWKQVVHINDYQKSRFVNRVVSSMFNTVSGKKIAVLGFAFKKDTGDTRETAAIDVCHGLLGDKAQLSIYDPQVTEDQIRRDLAMNKFDWDHPQHLLPSSPTASKQISVVWDAYEATKNAHGVCILTEWDEFKNLDYDKIYQNMEKPAFVFDGRNVVDAEKLRKIGFIVYSVGKPLDPWIKDLPAAPSS

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
846	11			88	0.923564
891	16		83		0.994512
942	10	90			0.90298
944			10	90	0.90298
946	90		10		0.90298
1631	4	95			0.996599
1632	95			4	0.996599
1633		93	4	2	0.985381
1634	95			4	0.99692
1781	84	3	3		0.999999
1782	3		3	84	0.999999
1783			3	87	1.0
1788	62		37		1.0
1853		66		33	1.0
1953	25			75	0.996473
1954	75	25			0.996473
1955		75	25		0.996473
1963	50			50	1.0
2037	7	64		28	1.0
2085	88		11		0.999952
2099		11		88	0.923564
2104	28	57			1.0
2105	50	50			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain