SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1923

Length: 1139 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene1923

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00026, Asp, Eukaryotic aspartyl protease	-	-	4.0e-13	21%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%

Source	GOs	Term	Type	e value	Identity
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	0.0	-
Sma3	proteolysis	GO:0006508	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase A1	IPR001461	-	0.0	-
Sma3	Peptidase aspartic, active site	IPR001969	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRL7

Fln msg: your sequence is shorter than subject: 306 - 452

Fln protein: ATAPAYEPAQSSSYEAVACNTQSCQQISGSNCGENLRCQFEFSSGYNTEEVALLATDAIILGYQYIPYFSFGCADSLGGYTSTQPGLMGLGGGSLSLLNHPSTSELFGGIFSYCLPGSSASSGSFVLGKEAALNTPGLKFTTLIKDPSNPTFYFVNLMGISVGNTRISVPDTNIGSGEGTILHSGTAITYLVDSVYTALADAFQGQLPNLQRVSLNELDACYDFSSSSSSVDIPTITLHLDNNVDLLLPNENVLLKVESGLSCLAFSRTDSRSIIGNVQQQNWRVVFDIPNSQVGFAREQCGAPA*

Protein Length: 307

Fln nts: GCGACTGCTCCAGCTTACGAACCCGCACAATCGTCGTCATATGAAGCTGTGGCATGCAATACTCAGTCATGTCAGCAAATTTCTGGTAGCAATTGCGGGGAAAATTTGAGATGTCAATTCGAATTTTCGTCTGGATATAACACTGAAGAGGTCGCTTTACTTGCTACGGATGCTATCATCCTCGGCTATCAATATATTCCCTATTTCTCATTCGGTTGTGCAGATTCGCTAGGTGGCTATACGTCGACGCAACCGGGATTGATGGGACTGGGGGGCGGATCACTTTCTTTGTTGAATCATCCGTCCACTAGCGAATTATTTGGCGGAATCTTTTCTTACTGTCTTCCCGGCTCATCTGCATCCTCGGGATCCTTTGTGCTTGGGAAGGAAGCTGCCTTGAACACTCCTGGTTTGAAATTCACCACATTGATAAAAGATCCCTCAAACCCGACGTTCTATTTTGTGAACTTGATGGGAATCAGCGTTGGCAATACAAGGATCTCAGTGCCGGACACAAATATTGGTAGTGGTGAAGGAACGATCCTCCACTCGGGAACAGCGATCACGTATCTCGTTGATTCTGTTTATACGGCTCTCGCAGACGCTTTTCAGGGGCAGCTCCCTAACTTGCAGCGGGTATCCCTTAACGAATTGGATGCTTGCTATGACTTCTCTTCTTCTTCGTCTTCAGTCGACATTCCCACCATAACACTGCACTTGGATAACAATGTCGACCTTCTTTTGCCGAATGAAAATGTTCTGTTGAAAGTCGAATCGGGGCTCTCTTGCTTGGCCTTCTCTCGCACCGATTCTCGTTCCATCATAGGAAATGTTCAACAGCAGAATTGGCGTGTCGTTTTTGATATTCCCAATTCTCAAGTCGGATTTGCTCGGGAGCAATGTGGAGCACCTGCTTGA___TTATACGTCCATTTCCTTTCTTCCACAAAAATTCTTCATCCATCCATTTCCTTATATTATGTTTCATCGCTACCGTTTACTTATATGTGCTTTCTCACCGCTGTTTTTGAAAAATATTTTCTGCCGTCGTATGAAATGCAGTAGGCCGCAGCTGCTCTTTTGCGGTTTGCTGCTTAGAATACTTTTCTATTTTCGTCCTCAAATGAGTTGAATGTATCTCG

Fln Alignment:

Contig1923___ATAPAYEPAQSSSYEAVACNTQSCQQISGSNCGENLRCQFEFSSGYNTEEVALLATDAIILGYQYIPYFSFGCADSLGGYTSTQPXXXXXXXXXXXXXNHPSTSELFGGIFSYCLPGSSASSGSFVLGKEAALNTPGLKFTTLIKDPSNPTFYFVNLMGISVGNTRISVPDTNIGSGEGTILHSGTAITYLVDSVYTALADAFQGQLPNLQRVSLNELDACYDFXXXXXXVDIPTITLHLDNNVDLLLPNENVLLKVESGLSCLAFSRTDSRSIIGNVQQQNWRVVFDIPNSQVGFAREQCGAPA
B8LRL7______________STAPIFDPAKSSSYKPFACDSQPCQEISG-NCGGNSKCQFEVSYGDGTQVDGTLASDAITLGSQYLPNFSFGCAESLSEDTSPSPGLMGLGGGSLSLLTQAPTAELFGGTFSYCLPSSSTSSGSLVLGKEAAVSSSSLKFTTLIKDPSIPTFYFVTLKAISVGNTRISVPGTNIASGGGTIIDSGTTITHLVPSAYTALRDAFRQQLSSLQPTPVEDMDTCYDL--SSSSVDVPTITLHLDRNVDLVLPKENILITQESGLACLAFSSTDSRSIIGNVQQQNWRIVFDVPNSQVGFAQEQCAAPA

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
273			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain