SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1897

Length: 1555 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene1897

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Receptor protein kinase CLAVATA1, putative n=1 Tax=Ricinus communis RepID=B9R9V0_RICCO	-	-	0.0	45%
FL-Next	tr=Receptor protein kinase; Pinus sylvestris (Scots pine).	-	-	0.0	32%
Sma3	Receptor protein kinase CLAVATA1, putative	-	-	3.695e-15	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	1.298e-09	-
Sma3	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	3.302e-06	-

Source	Gene names
Sma3	AT1G08590; AT4G28650; AT5G61480; At1g08590; At4g28650; At5g61480; CLL1A; CLL1B; GSVIVT00005619001; GSVIVT00021105001; GSVIVT00028502001; GSVIVT00030869001; GSVIVT00035385001; LOC_Os03g05140; LRR-RLK; MtrDRAFT_AC140550g38v2; OJ1172F09.6; Os02g0111800; Os03

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G61480.1	PXY Leucine-rich repeat protein kinase family protein chr5:24724541-24727842 REVERSE LENGTH=1041	45%
RefSeq	Arabidopsis thaliana	NP_200956.1	putative leucine-rich repeat receptor-like protein kinase [Arabidopsis thaliana]	45%
RefSeq	Populus trichocarpa	XP_002303493.1	predicted protein [Populus trichocarpa]	45%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9FEU2

Fln msg: Distance to subject end: 512 aas, your sequence is shorter than subject: 518 - 1145

Fln protein: GIPWQLGYLSKLVFMHIANANLTGPLPVELSMLKRLDTMILYSNKLTGFIPWQLSNIARLEQLDLSRNMLTGPIPKELSTLRRLTTLNLMSNKLSGGIPKGIADLPNLQILYIWNNSLTGSIPEQLGRNSRLVEFDASTNQLNGHPIPSDLCAGNKLERLILFSNQLTGEIPQNLTNCAPLYRVRMAHNNLSGRIPLGFGKLQNLNYMEFPWNNFSGPFPSDLLNSPSLQLLNVSHNSLQGSLPPNIWSSPSLQIFSAAFSNLSGKLPSFEHCNSVYKLELQGNSFSGSIPKDIANCQKLLTISLSQNELTGVIPPGIASLPSITSIDLSENALTGTIPLNFQNCTTLESLNVSFNHLVGPVPSEGIFRNIDVSAFVGNQGLCGGVLIESPCMNSSGLYNPSYYSRVTKKTVPIWLIAVVTILAIALVVIGIIWFHKYYICYVSGKVCMTEEHPENPWKMTSFQRLSFTTEDILESLKPDNMIGIGAAGTVYRVERPGGHVIAVKKLRWVEKEKEKEG

Protein Length: 519

Fln nts: TGGGATTCCATGGCAATTGGGGTACTTGTCAAAGCTGGTGTTTATGCATATTGCAAATGCTAATTTAACTGGGCCCTTGCCTGTGGAGTTGAGCATGTTAAAGAGGCTAGATACAATGATTCTGTATAGTAACAAGCTTACTGGATTCATCCCATGGCAGTTGAGCAATATTGCAAGATTGGAGCAATTGGATTTGTCTCGAAACATGCTCACTGGACCGATTCCTAAAGAACTTTCGACACTCAGAAGGCTGACAACACTGAATTTGATGAGCAATAAACTCAGTGGAGGCATCCCTAAGGGAATTGCTGATCTGCCTAATCTGCAAATTTTGTATATCTGGAACAATTCCCTCACAGGAAGCATTCCTGAGCAGTTGGGTAGAAATTCTAGGTTAGTAGAATTTGATGCATCTACTAATCAACTTAACGGGCACCCAATCCCCTCTGACCTGTGTGCAGGCAACAAGTTAGAAAGACTTATCCTTTTTTCTAATCAATTAACCGGAGAAATCCCTCAGAATCTTACAAATTGTGCCCCTCTGTATAGGGTCCGGATGGCTCATAACAATCTTAGTGGCCGCATTCCTTTAGGTTTTGGAAAGCTTCAAAACCTAAATTACATGGAATTCCCATGGAACAATTTTAGCGGGCCTTTTCCTTCTGATCTCTTAAATTCACCTAGTTTGCAACTCCTTAATGTTTCTCATAATTCTCTCCAAGGCAGCCTCCCTCCAAATATCTGGTCTTCTCCGAGCCTGCAAATATTTTCAGCAGCTTTCTCAAATTTATCAGGCAAACTTCCCTCCTTTGAACATTGCAATTCTGTATACAAGCTTGAACTTCAGGGAAATAGCTTTTCGGGTAGTATTCCCAAAGATATTGCCAATTGCCAAAAGCTCTTGACCATTTCCTTGAGCCAAAATGAGTTGACTGGTGTGATCCCTCCTGGGATAGCAAGTCTTCCCAGCATCACTAGCATTGATCTGTCTGAAAATGCCCTCACTGGCACGATTCCCCTAAATTTTCAGAATTGCACTACCTTAGAGTCCCTTAATGTCTCCTTCAATCATCTCGTTGGTCCTGTTCCTTCAGAAGGGATTTTCAGAAACATCGATGTTAGCGCTTTTGTGGGAAACCAAGGACTCTGCGGTGGAGTCCTGATAGAGTCTCCTTGCATGAATTCAAGTGGCCTTTACAATCCCTCATATTACTCTCGAGTCACTAAGAAAACTGTTCCGATTTGGCTGATTGCAGTGGTGACTATTCTAGCAATAGCCCTTGTCGTAATTGGCATAATATGGTTCCACAAGTACTATATTTGTTATGTTTCTGGTAAAGTATGCATGACAGAAGAACATCCTGAAAACCCTTGGAAGATGACCTCATTCCAGCGTCTCAGCTTCACAACAGAAGATATTTTGGAGAGCTTGAAGCCTGATAACATGATTGGCATTGGAGCAGCCGGTACAGTTTACAGGGTTGAAAGGCCAGGGGGTCATGTCATAGCTGTGAAGAAGCTACGGTGGGTGGAGAAAGAGAAAGAGAAGGAGGGA

Fln Alignment:

Contig1897___GIPWQLGYLSKLVFMHIANANLTGPLPVELSMLKRLDTMILYSNKLTGFIPWQLSNIARLEQLDLSRNMLTGPIPKEXXXXXXXXXXXXXXXKLSGGIPKGIADLPNLQILYIWNNSLTGSIPEQLGRNSRLVEFDASTNQLNGHPIPSDL--CAG----------------------NKLERLILFSNQLTGEIPQNLTNCAPLYRVRMAHNNLSGRIPLGFGKLQNLNYMEFPWNNFSGPFPSDLLNSPSLQLLNVSHNSLQGSLPPNIWSSPSLQIFSAAFSNLSGKLP-SFEHCNSVYKLELQGNSFSGSIPKDIANCQKLLTISLSQNELTGVIPPGIASLPSITSIDLSENALTGTIPLNFQNCTTLESLNVSFNHLVGPVPSE
Q9FEU2______________GVICSLDHENLVTEINIQSVQIAGNVPSQFAVLGSLRSLVISAANLTGSIPAEIGGYESLEILDLSGNRLRGNIPAEISKLKNLKSLILNSNQLQGSIPAEIGNCHNLVDLVVFDNQLSGKIPAELGRLANLEVFRAGGNENIEGTLPDELSNCTNLVTLGLAETNISGKIPLSFGSLKKLQTLAIYTAFLSGTIPAELGNCSELVNLYLYENRLSGAIPRELGKLQKLEKLYLWDNELDGSIPAELGSCSSLKFVDLSTNSLSGSIPDSFGSLKNLSELEITDNNVSGSIPAALANCTELTQIQLYNNQISGQMPAELGALKKLTVLFLWQNNLEGPIPSSLGSCDNLQSLDLSHNRLTGSIPPSLFEIKNLTKLLLLSNELTGALPPE

SNPs (tot: 53)

Position	A %	C %	G %	T %	Probability
480	25		75		0.996473
481	75			25	0.996473
483			25	75	0.996473
485	75		25		0.996473
486	25			75	0.996473
491			25	75	0.996473
492			25	75	0.996473
493		25		75	0.996473
495		75	25		0.996473
499	75	25			0.996473
512			80	20	0.995493
513	80	20			0.995493
515	80			20	0.995493
516	80		20		0.995493
521		80		20	0.995493
523		80	20		0.995493
524	80		20		0.995493
525		20	80		0.995493
526	80			20	0.995493
527	80		20		0.995493
530	20			80	0.995493
531		20		80	0.995493
532	80			20	0.995493
550		16		83	0.994512
551	83		16		0.994512
553	83	16			0.994512
555			83	16	0.994512
557	16			83	0.994512
562	83	16			0.994512
565			83	16	0.994512
567	16			83	0.994512
571	83	16			0.994512
621	87		12		0.992554
622	87			12	0.992554
625			12	87	0.992554
628	87			12	0.992554
632	87	12			0.992554
633	87			12	0.992554
634			12	87	0.992554
637	12	87			0.992554
642		12	87		0.992554
650	87			12	0.992554
793	83			16	0.999991
809	10			90	0.90298
810		10		90	0.90298
811		90		10	0.90298
813	10	90			0.90298
985	50		50		1.0
986	25		75		0.996473
1000		25	75		0.996473
1077		33		66	0.997452
1079	66			33	0.997452
1082			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain