SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1891

Length: 2694 nt

UniGene Fasta

>sp_v3.0_unigene1891
TGGAAATGTAAAGAACACACCTAAAGAGCCATGTACCCTGAATTGGGTTCTGGCGCGCTTCACTGCTGTAACCCGGTAGAATAGATGTTGTACCTGTAATGTTTTGTAGAAATTTGAAGGAAATGGAAATGGAAACGGACAGCAATATGAATAGTAATAGCAATGGGTCGAGGCATTGGAGGCAGGTGGTGGATAGGAAGTTGAAGAGGCTGCATTCCCTCATTTTTGGCGCGGAAGTCTGTCTGGAGAGTGGAGATGCCCAAACGGCCCTGGGCCTGGGTTTAAGGTTGTCAGGGTTTCTGGAATCTGAATGCCGGGATACCACTGATAACCTTTACATCACCCCAATTCAGAGAGATCTTCACAGCAAAATGGACGTCGCTCGCCAAATGCTGGCTGCGGATGGTGACCGTCGCGCTTTTGAACAAGCAAGGTCCAAGGAAGATAGCATTTTCTTTAAAAGAGGAAAAGTTGATGTAGAAATGATCAAGCAATCGAGGTTTTATGAACCTCTGATTGACAAGAATTCTGTCCCTAAGAATAACGATCTGGGTTCCAACATGCCACAAAGAAGCCTTTTGCAGCAACCAAAAAGAATGGACAGTCACCCATCTGAAAATTCATCAAAAATCCCCAAGCATTTGACGCAGGCCAAACTAACATCGTTGTATGGCATTGAGCATTCTAAGTCAGCTGATACATCCCTCAGGAGACAGGCAAGTTCTCCCCAAAGCAGTTCCTTTCATGAGCTAGCCCAAAAGAGGACAATGCTTTCAAACTGCGCGAACAGCCAGAGAAACATGAATTCCACTTCACCTATAGTAATAGATGACGAAGATAGTGCATATGAAAATAACATAAGAAAAAAGCGACGGCATTTAGAGGGGCCTAACTGTATGGCTGAAAATAGTTGGCTACCATCTAACAATGAAGGCACGCATGATGATATTTCAGCTACTGGATTTGTTACAGCGAGATTAAAATTGGCAATGGATACCGTGCAGAAACGGGGTGCTTCTTATTCTCCGAATGTTTCTCCATCTGCAGCAGTTAATCCAGTATATTCTAGTGGTGGTAATAGTGGAGGTAATCTGCGTACTACTGTGCCCAAGTCACTGGGGATGTCTCGGAGAGGTGTGCGGAACAACTTTATTCCTCCTGTACGTTCCAATGTTGCTGGTGGTGGGGCTGCCACAGCATCACGTCTACCAGGAAATGTGGATAATGGCTTAGAAGAATCAACAAAACGATGTTTAGAGATGCTTGTGGGTCCTGATGGTGAGCTTCCTGACAAATTACGGAACCTTGAACCCCGTCTTATAGAGCATGTTAGCAATGAGATAATGGACCAGGATCCCAATGCTCGGTGGGAAGATATTGCTGGTCTGGAGCATGCCAAAAAGTGTGTGACTGAAATGGTTATATGGCCTCTTTTGCGGCCGGATATCTTTAAAGGCTGTCGCTCTCCTGGCAAAGGGCTTCTTCTATTTGGCCCTCCTGGCACTGGGAAAACCATGATTGGGAAAGCTATTGCAGGGGAAGCTAAAGCTACTTTCTTTTATATCTCTGCAAGTTCACTGACAAGTAAGTGGATAGGCGAGGGTGAGAAGCTCGTGAGGGCTTTGTTTGGGGTGGCTAGCTGTCGTCAACCTGCAGTAATTTTTGTTGATGAAATAGATTCTCTTCTCTCCCAACGTAAATCAGATGGAGAACATGAGTCTAGCAGAAGATTGAAGACACAGTTTTTGATAGAAATGGAAGGATTTGATAGTGGCAATGAGCAATTGCTATTGATTGGGGCGACAAACAGGCCACAGGAACTTGATGAAGCTGCTCGTAGACGTCTAACAAAGCGCCTATACATACCACTACCATCTACAGAAGCAAGATCGTGGATAGTAAAGAATCTGTTGGAGAAGGATGGCTTGCTTACACTCTCAATTGAAGATATAAGCTCTATCTGCAAGATTACCGAAGGGTATTCTGGATCAGACATGAAAAATCTTGTCAAGGATGCATCAATGGGACCACTTAGAGAAGCCTTGAGGAAAGGCATTGACATTGCTAACTTAAAAAAAGAGGATATGAGGCCTGTTATGTTCCAGGATTTTAAGAGTGCATTGCAAGAAGTAAGACCTTCTGTTTCGCAAAATGAACTTGCAATCTATGAAGAGTGGAATCGACAATTTGGCAGCCTTTCAGTGTAGTTATCAGACTGAGAAATTGTGTAAGCAGTAGTTTTCAGTCATATTCATTTAATCAGAAACCATATCATGGCAGCTCATTTCTGTTACTTCTGTATGTACGGAAATGTAATAGAATAGCTGAGATTTCAAAACGGAAGATCTTTGCCTGATCTAACATGTTTTAGTGACATTTGATTTTTGGTAGTGTTTCTAGAGGTGGCCATCTCGAATGTATTTTGCTCTTCTAAATTCAGTCTTTATTTGCACTGAATTTGATGGATCAACTTTGAACTGCTAGGCTAAAGAGTTTATTGACAATGCAGTAACACCTGCTAATCAATATTTCGGATGAATTGTTATACTGAAAGGGATGATGGACCAGATGGCTTCAATACAAATGAGTTCAGGGTTTTCCAGGAGAAGAAATGTGGTTACGAGAAAATATTTACGATCATACTAGGTCATCAAACATATCTGAGCATGGTTTCTTGCAAGCTTTCTTATGTGT

Ace file of the UniGene sp_v3.0_unigene1891

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[O] COG0464 ATPases of the AAA+ class	-	-	0.0	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%
Sma3	AAA-type ATPase family protein, putative, expressed	-	-	1.969e-07	-

Source	ECs	Term	Type	e value	Identity
Sma3	Microtubule-severing ATPase.	EC:3.6.4.3	-	2.408e-16	-

Source	Gene names
Sma3	AT1G64110; AT2G34560; AT4g02470; AT4g24850; AT4g27680; At1g02890; At1g64110/F22C12.12; At2g34560; At3g27130; At4g02470; At4g02480; At4g24850; At4g27680; At5g53540; CHLREDRAFT_113573; CHLREDRAFT_116557; CHLREDRAFT_177153; CHLREDRAFT_181992; CHLREDRAFT_9865

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	ATP-dependent peptidase activity	GO:0004176	Molecular Function	-
Sma3	aminopeptidase activity	GO:0004177	Molecular Function	-
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	thiamine diphosphokinase activity	GO:0004788	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	mismatched DNA binding	GO:0030983	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	mismatch repair	GO:0006298	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	thiamine metabolic process	GO:0006772	Biological Process	-
Sma3	thiamine diphosphate biosynthetic process	GO:0009229	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Forkhead-associated (FHA) domain	IPR000253	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Like-Sm ribonucleoprotein (LSM) domain	IPR001163	-	-
Sma3	Peptidase M18	IPR001948	-	-
Sma3		IPR001984	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Thiamin pyrophosphokinase	IPR006282	-	-
Sma3	Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type	IPR006649	-	-
Sma3	MIT	IPR007330	-	-
Sma3	Thiamin pyrophosphokinase, catalytic domain	IPR007371	-	-
Sma3	Thiamin pyrophosphokinase, vitamin B1-binding domain	IPR007373	-	-
Sma3	DNA mismatch repair protein, C-terminal	IPR013507	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-
Sma3	MutL, C-terminal, dimerisation	IPR014790	-	-
Sma3	Vps4 oligomerisation, C-terminal	IPR015415	-	-
Sma3		IPR015706	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-
Sma3	Small acid-soluble spore protein, alpha/beta-type, conserved site	IPR018126	-	-
Sma3	Formate C-acetyltransferase glycine radical, conserved site	IPR019777	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G27120.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein chr3:10000248-10003265 REVERSE LENGTH=476	69%
RefSeq	Arabidopsis thaliana	NP_189348.3	P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002298622.1	predicted protein, partial [Populus trichocarpa]	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P2N1

Fln msg: your sequence is longer than subject: 703 - 439

Fln protein: MFCRNLKEMEMETDSNMNSNSNGSRHWRQVVDRKLKRLHSLIFGAEVCLESGDAQTALGLGLRLSGFLESECRDTTDNLYITPIQRDLHSKMDVARQMLAADGDRRAFEQARSKEDSIFFKRGKVDVEMIKQSRFYEPLIDKNSVPKNNDLGSNMPQRSLLQQPKRMDSHPSENSSKIPKHLTQAKLTSLYGIEHSKSADTSLRRQASSPQSSSFHELAQKRTMLSNCANSQRNMNSTSPIVIDDEDSAYENNIRKKRRHLEGPNCMAENSWLPSNNEGTHDDISATGFVTARLKLAMDTVQKRGASYSPNVSPSAAVNPVYSSGGNSGGNLRTTVPKSLGMSRRGVRNNFIPPVRSNVAGGGAATASRLPGNVDNGLEESTKRCLEMLVGPDGELPDKLRNLEPRLIEHVSNEIMDQDPNARWEDIAGLEHAKKCVTEMVIWPLLRPDIFKGCRSPGKGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQRKSDGEHESSRRLKTQFLIEMEGFDSGNEQLLLIGATNRPQELDEAARRRLTKRLYIPLPSTEARSWIVKNLLEKDGLLTLSIEDISSICKITEGYSGSDMKNLVKDASMGPLREALRKGIDIANLKKEDMRPVMFQDFKSALQEVRPSVSQNELAIYEEWNRQFGSLSV*

Protein Length: 704

Fln nts: TGGAAATGTAAAGAACACACCTAAAGAGCCATGTACCCTGAATTGGGTTCTGGCGCGCTTCACTGCTGTAACCCGGTAGAATAGATGTTGTACCTGTA_-_ATGTTTTGTAGAAATTTGAAGGAAATGGAAATGGAAACGGACAGCAATATGAATAGTAATAGCAATGGGTCGAGGCATTGGAGGCAGGTGGTGGATAGGAAGTTGAAGAGGCTGCATTCCCTCATTTTTGGCGCGGAAGTCTGTCTGGAGAGTGGAGATGCCCAAACGGCCCTGGGCCTGGGTTTAAGGTTGTCAGGGTTTCTGGAATCTGAATGCCGGGATACCACTGATAACCTTTACATCACCCCAATTCAGAGAGATCTTCACAGCAAAATGGACGTCGCTCGCCAAATGCTGGCTGCGGATGGTGACCGTCGCGCTTTTGAACAAGCAAGGTCCAAGGAAGATAGCATTTTCTTTAAAAGAGGAAAAGTTGATGTAGAAATGATCAAGCAATCGAGGTTTTATGAACCTCTGATTGACAAGAATTCTGTCCCTAAGAATAACGATCTGGGTTCCAACATGCCACAAAGAAGCCTTTTGCAGCAACCAAAAAGAATGGACAGTCACCCATCTGAAAATTCATCAAAAATCCCCAAGCATTTGACGCAGGCCAAACTAACATCGTTGTATGGCATTGAGCATTCTAAGTCAGCTGATACATCCCTCAGGAGACAGGCAAGTTCTCCCCAAAGCAGTTCCTTTCATGAGCTAGCCCAAAAGAGGACAATGCTTTCAAACTGCGCGAACAGCCAGAGAAACATGAATTCCACTTCACCTATAGTAATAGATGACGAAGATAGTGCATATGAAAATAACATAAGAAAAAAGCGACGGCATTTAGAGGGGCCTAACTGTATGGCTGAAAATAGTTGGCTACCATCTAACAATGAAGGCACGCATGATGATATTTCAGCTACTGGATTTGTTACAGCGAGATTAAAATTGGCAATGGATACCGTGCAGAAACGGGGTGCTTCTTATTCTCCGAATGTTTCTCCATCTGCAGCAGTTAATCCAGTATATTCTAGTGGTGGTAATAGTGGAGGTAATCTGCGTACTACTGTGCCCAAGTCACTGGGGATGTCTCGGAGAGGTGTGCGGAACAACTTTATTCCTCCTGTACGTTCCAATGTTGCTGGTGGTGGGGCTGCCACAGCATCACGTCTACCAGGAAATGTGGATAATGGCTTAGAAGAATCAACAAAACGATGTTTAGAGATGCTTGTGGGTCCTGATGGTGAGCTTCCTGACAAATTACGGAACCTTGAACCCCGTCTTATAGAGCATGTTAGCAATGAGATAATGGACCAGGATCCCAATGCTCGGTGGGAAGATATTGCTGGTCTGGAGCATGCCAAAAAGTGTGTGACTGAAATGGTTATATGGCCTCTTTTGCGGCCGGATATCTTTAAAGGCTGTCGCTCTCCTGGCAAAGGGCTTCTTCTATTTGGCCCTCCTGGCACTGGGAAAACCATGATTGGGAAAGCTATTGCAGGGGAAGCTAAAGCTACTTTCTTTTATATCTCTGCAAGTTCACTGACAAGTAAGTGGATAGGCGAGGGTGAGAAGCTCGTGAGGGCTTTGTTTGGGGTGGCTAGCTGTCGTCAACCTGCAGTAATTTTTGTTGATGAAATAGATTCTCTTCTCTCCCAACGTAAATCAGATGGAGAACATGAGTCTAGCAGAAGATTGAAGACACAGTTTTTGATAGAAATGGAAGGATTTGATAGTGGCAATGAGCAATTGCTATTGATTGGGGCGACAAACAGGCCACAGGAACTTGATGAAGCTGCTCGTAGACGTCTAACAAAGCGCCTATACATACCACTACCATCTACAGAAGCAAGATCGTGGATAGTAAAGAATCTGTTGGAGAAGGATGGCTTGCTTACACTCTCAATTGAAGATATAAGCTCTATCTGCAAGATTACCGAAGGGTATTCTGGATCAGACATGAAAAATCTTGTCAAGGATGCATCAATGGGACCACTTAGAGAAGCCTTGAGGAAAGGCATTGACATTGCTAACTTAAAAAAAGAGGATATGAGGCCTGTTATGTTCCAGGATTTTAAGAGTGCATTGCAAGAAGTAAGACCTTCTGTTTCGCAAAATGAACTTGCAATCTATGAAGAGTGGAATCGACAATTTGGCAGCCTTTCAGTGTAG___TTATCAGACTGAGAAATTGTGTAAGCAGTAGTTTTCAGTCATATTCATTTAATCAGAAACCATATCATGGCAGCTCATTTCTGTTACTTCTGTATGTACGGAAATGTAATAGAATAGCTGAGATTTCAAAACGGAAGATCTTTGCCTGATCTAACATGTTTTAGTGACATTTGATTTTTGGTAGTGTTTCTAGAGGTGGCCATCTCGAATGTATTTTGCTCTTCTAAATTCAGTCTTTATTTGCACTGAATTTGATGGATCAACTTTGAACTGCTAGGCTAAAGAGTTTATTGACAATGCAGTAACACCTGCTAATCAATATTTCGGATGAATTGTTATACTGAAAGGGATGATGGACCAGATGGCTTCAATACAAATGAGTTCAGGGTTTTCCAGGAGAAGAAATGTGGTTACGAGAAAATATTTACGATCATACTAGGTCATCAAACATATCTGAGCATGGTTTCTTGCAAGCTTTCTTATGTGT

Fln Alignment:

Contig1891___DGELPDKLRNLEPRLIEHVSNEIMDQDPNARWEDIAGLEHAKKCVTEMVIWPLLRPDIFKGCRSXXXXXXXXXXXXXXXXMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQRKSDGEHESSRRLKTQFLIEMEGFDSGNEQLLLIGATNRPQELDEAARRRLTKRLYIPLPSTEARSWIVKNLLEKDGLLTLSIEDISSICKITEGYSGSDMKNLVKDASMGPLR------------------------------EALRKGIDIANLKKEDM-RPVMFQDFKSALQEVRPSVSQNELAIYEEWNRQFG
A9P2N1______________DGEDPE-----QAKLRSGLNSAIIREKPNVKWTDVAGLESAKQALQEAVILPVKFPQFFTGKRKPWRAFLLYGPPGTGKSYLAKAVATEADSTFYSISSSDLVSKWMGESEKLVSNLFQMARDCAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHL-GDTPNNLTEGDFEDLARRTDGFSGSDISVCVKDVLFEPVRKTQDAMFFSKVSTKDGEMWMPCGPRQPGAVQTTMQELAVKGLASQILPPPISKADFDKVLARQRPTVSKHDLEVQERFTKEFG

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1717	66		33		0.997452
1892	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain