SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1887

Length: 2829 nt

UniGene Fasta

>sp_v3.0_unigene1887
GGAATCCGGATGGAATGCCCAATTCCTCCCTAGAAGGTTGGTGCAGAAAAAAGCTCTGGACTCAGCTTGTGGAGAATTGCAAAGGTTTTAGTCATTGGCATTGTAACGGATAGACATAGTCAATCCAGCTGGCCTACACTCGTGAATGGTGCTTCGCACAGGCCTCTGCCTCAATTTTCATCTGGAATCAGGTCTGAAACTCAACTTGTAGGAAATTGTAAGGGTCTCAGTCTATTGGCATAGCAATGGATACATAGTCAATCCAGTTGGCGTACACTTGTGAATTACTTCGTACAATCGTGAATGGTGCTTCGTACAGGCCTCTGCTTCAATTTTCGTCTAGAATCAGATCCAAATCACTGAGTGCATCTGAAGGAAGAGGCCTATTCGCACTTCACATCCCTGCTTCAAACATGGTGTCAGTAATTGTTGTCAACCCTTTCCAGAACAGGGAGCTCTCCTCTGGCCAGATTGAAAAGCAGTTTCGCGAAGGTTTACGGTGCAGTGGAACATCAAATATGGATACACACTCTGATTCTATTCCTACTGTCTTCAAGGTGGACTATGTCAGTTCTATTGCAGATGCGGGAAAGCTACTGCAGAGAACACTAAATGATTACAGGGATCAGCATCGTGGTCCGACACTTAGTGTCATTGAATGCCCTAATACGGAACAATTAAATGCAGTTATTCCTGTCCTGTTGGATTTTCCTTGCATCAAAGTTCCTTGCAATGCCCGTGATAGTCAATACCAGGCTCTTGGATGGCAGAGTATGGCAGCAAAGACGGGGATGCAGCGTTGTGCTGCATCATCCCAGTGGTTGAATGAAAGAATTGCTCTTTCTCGATATGCACATGTACCCATAGGTAACTTTGACCTTGATTGGCTTCTATTTACTGCAGACATCTTTTATTCCAGAGCCCTACATGATCACCAACAAGTGCTTTGGATATCAGACGATGGAATTCCAGATCTGGGAGGTATTCCAGAAGAGGAACCAAGCTTTTTAGATGAAGTGCAACAACCTGTTCTTGTTTTCCCAGGAGCATATAGGACAGTTTCTATAGAGTTGAAGATTCATCATCTTGCAGTAAATGCAATATTGAAGAGCAACCAGGTGAATGAAATGGAAGGAGGAACATTATTAGGATTTGAGCTAGATGGCAAAGGAGGGGGAGGACAGTTTGGCAGTGAATCAACAAGCTGGGATGAAGCAACTTCTTGTGCACCTGCCTTTCGTATTTTGAAGCAAATGGTTCAAGGATGTGTAGCTGATGCAGTTTCCTCTGGAAACATTTTCGCAGATGCTTTGCTGCAACATATATATCGCTGGCTTGGCAGTCCACAGTCAAAGCTACATGATCCAGCTCTTCATCGAGTTCTACAAAAGGTTATGCAAAAAGTATTTGCTCTACTAATAGCAGAATTCCGCAAACTTGGGGCAACCATCATCTATGCAGATTTCTCCAGAATCATTATAGATACCGGAAAAGTGAATGTAATAACAGCTCAAGGCTACTGTGAATACCTTCTGAAAACCCTTCAAAGCAGGGAACTTTTTGAATGGATTGAGCTAGAGCCTCAGCGTTTTTGGCACTCTCTTCTATTCATGGACCAGTATAACTATGGAGGAATTCAGGCAAAGTCTGTTGCTGGAACAGAGTCAATTAATTCAGTTTTAGAGGCTGATACTCAACCAGACATAGTATCAAGCTGGAATATTGCAGAGTATCTACCCAAGGCTATCCAGGATTACTTTGTCGTCATAGTGTCTGAATTTATATATAGCCCTTGGAAACATTCACAAGAGCAGGCTGCATTGCATGCTGCTGCAAGGGAGGGGAGTCTCTGCACACCTTCAGTTACAGTTGCAGCAGCAGCGGATCTTGAATTGGAGGAAGTCTCATTCCTGAAGGAGCAGATTGCTTCATACTTTACAGATAAGCTTCTGAGGGTTGTCCGTGATATACTGCGTCATATTACTGCTAAAGGAAGAAAAGAGGATGCTTCTGCAGAGGCTGTTTCCCATGAATTCCCAAAACTAGCTGGTTCTCACTTACCAATGGGTGATGGTGCTTTGGAATTCATTAAGCATGTTTGTGCCGTTCTTGCTCTTGATCAACGTGTTCAACATGATGTTTTGGTAATGCGAAAAAACCTTTTAAAGTTGGTCCATGTAAAAGAGTTTTCTCCAGAGGCAGAATTTCATGATCCATGCCTGTCATTCACTCTTCCTAATGTGATTTGCAGTTATTGCAATGACTGCAGGGACTTGGATCTATGCCGTGACGCTGCATTGCTAGAGCATGATTGGCGATGTTCTGTGCCACAGTGTGGTCAGCCATACAACAAAGAGTGGATTGAAAACGCACTACTCCAAATTGTACGCCAAAGGGAGCGCCTGTACCACGTACAAGACCTTGTATGTTCAAAGTGTCGCCAAGTGAAGTCATCCCATCTTACTGAGCAATGCAGTTGTGCGGGTTCATTCCTTTGTAAAGATGATCCCAGGGGTTTCCTTGGCAAAATGCGGGTCTTCCTCAACATTGCAGTTTATCACCAATTCCAACTTCTTAGAGAGTGCATTTCATGGGTGTTAGAGATCAACTAGATCCGTTGTCGTTCTCAACACATGTTGTAAAATATGAATATATAAAAGCTGTTGTCCAATAACGGGCAAATGGTATCATTGACGTGCAATAGCATTTAAACTCAGCATATGAATGTGTTTATTGAGTTTTTTGGTTTAGATGGGATTGATCAAAATCAACTGTCTGCATAATTTTCTTTTGTAAAAAATATTTCAAGATCCTTTGAAATAGTTGTAT

Ace file of the UniGene sp_v3.0_unigene1887

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SXI7_PHYPA	-	-	0.0	65%
FL-Next	sp=DNA polymerase; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	68%
Sma3	DNA polymerase	-	-	1.099e-23	-

Source	ECs	Term	Type	e value	Identity
Sma3	DNA-directed DNA polymerase.	EC:2.7.7.7	-	2.157e-25	-

Source	KEGGs	Term	e value	Identity
Sma3	Purine metabolism	00230	2.157e-25	%
Sma3	Pyrimidine metabolism	00240	2.157e-25	%
Sma3	Metabolic pathways	01100	2.157e-25	%

Source	Gene names
Sma3	At1g08260; At2g27120; GSVIVT00022048001; OSJNBa0001A11.28; Os02g0511900; OsI_07377; OsJ_06880; PHYPADRAFT_136896; POPTRDRAFT_594813; RCOM_0792580;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	epsilon DNA polymerase complex	GO:0008622	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	DNA-directed DNA polymerase activity	GO:0003887	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	DNA replication	GO:0006260	Biological Process	-
Sma3	positive regulation of S phase of mitotic cell cycle	GO:0045750	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA polymerase sigma-70 factor	IPR000943	-	-
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	DNA-directed DNA polymerase, family B, exonuclease domain	IPR006133	-	-
Sma3	DNA-directed DNA polymerase, family B, multifunctional domain	IPR006134	-	-
Sma3	DNA-directed DNA polymerase, family B	IPR006172	-	-
Sma3	DNA polymerase epsilon, catalytic subunit A, C-terminal	IPR013697	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G08260.1	EMB142, EMB2284, POL2A, TIL1, EMB529, ABO4, ESD7 DNA polymerase epsilon catalytic subunit chr1:2590944-2606892 FORWARD LENGTH=2161	48%
RefSeq	Arabidopsis thaliana	NP_172303.5	DNA polymerase epsilon subunit 1 [Arabidopsis thaliana]	48%
RefSeq	Populus trichocarpa	XP_002328167.1	predicted protein [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: A9SXI7

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 870 - 2233

Fln protein: NPDGMPNSSLEGWCRKKLWTQLVENCKGFSHWHCNG*T*SIQLAYTREWCFAQASASIFIWNQV*NSTCRKL*GSQSIGIAMDT*SIQLAYTCELLRTIVNGASYRPLLQFSSRIRSKSLSASEGRGLFALHIPASNMVSVIVVNPFQNRELSSGQIEKQFREGLRCSGTSNMDTHSDSIPTVFKVDYVSSIADAGKLLQRTLNDYRDQHRGPTLSVIECPNTEQLNAVIPVLLDFPCIKVPCNARDSQYQALGWQSMAAKTGMQRCAASSQWLNERIALSRYAHVPIGNFDLDWLLFTADIFYSRALHDHQQVLWISDDGIPDLGGIPEEEPSFLDEVQQPVLVFPGAYRTVSIELKIHHLAVNAILKSNQVNEMEGGTLLGFELDGKGGGGQFGSESTSWDEATSCAPAFRILKQMVQGCVADAVSSGNIFADALLQHIYRWLGSPQSKLHDPALHRVLQKVMQKVFALLIAEFRKLGATIIYADFSRIIIDTGKVNVITAQGYCEYLLKTLQSRELFEWIELEPQRFWHSLLFMDQYNYGGIQAKSVAGTESINSVLEADTQPDIVSSWNIAEYLPKAIQDYFVVIVSEFIYSPWKHSQEQAALHAAAREGSLCTPSVTVAAAADLELEEVSFLKEQIASYFTDKLLRVVRDILRHITAKGRKEDASAEAVSHEFPKLAGSHLPMGDGALEFIKHVCAVLALDQRVQHDVLVMRKNLLKLVHVKEFSPEAEFHDPCLSFTLPNVICSYCNDCRDLDLCRDAALLEHDWRCSVPQCGQPYNKEWIENALLQIVRQRERLYHVQDLVCSKCRQVKSSHLTEQCSCAGSFLCKDDPRGFLGKMRVFLNIAVYHQFQLLRECISWVLEIN*

Protein Length: 871

Fln nts: GGAATCCGGATGGAATGCCCAATTCCTCCCTAGAAGGTTGGTGCAGAAAAAAGCTCTGGACTCAGCTTGTGGAGAATTGCAAAGGTTTTAGTCATTGGCATTGTAACGGATAGACATAGTCAATCCAGCTGGCCTACACTCGTGAATGGTGCTTCGCACAGGCCTCTGCCTCAATTTTCATCTGGAATCAGGTCTGAAACTCAACTTGTAGGAAATTGTAAGGGTCTCAGTCTATTGGCATAGCAATGGATACATAGTCAATCCAGTTGGCGTACACTTGTGAATTACTTCGTACAATCGTGAATGGTGCTTCGTACAGGCCTCTGCTTCAATTTTCGTCTAGAATCAGATCCAAATCACTGAGTGCATCTGAAGGAAGAGGCCTATTCGCACTTCACATCCCTGCTTCAAACATGGTGTCAGTAATTGTTGTCAACCCTTTCCAGAACAGGGAGCTCTCCTCTGGCCAGATTGAAAAGCAGTTTCGCGAAGGTTTACGGTGCAGTGGAACATCAAATATGGATACACACTCTGATTCTATTCCTACTGTCTTCAAGGTGGACTATGTCAGTTCTATTGCAGATGCGGGAAAGCTACTGCAGAGAACACTAAATGATTACAGGGATCAGCATCGTGGTCCGACACTTAGTGTCATTGAATGCCCTAATACGGAACAATTAAATGCAGTTATTCCTGTCCTGTTGGATTTTCCTTGCATCAAAGTTCCTTGCAATGCCCGTGATAGTCAATACCAGGCTCTTGGATGGCAGAGTATGGCAGCAAAGACGGGGATGCAGCGTTGTGCTGCATCATCCCAGTGGTTGAATGAAAGAATTGCTCTTTCTCGATATGCACATGTACCCATAGGTAACTTTGACCTTGATTGGCTTCTATTTACTGCAGACATCTTTTATTCCAGAGCCCTACATGATCACCAACAAGTGCTTTGGATATCAGACGATGGAATTCCAGATCTGGGAGGTATTCCAGAAGAGGAACCAAGCTTTTTAGATGAAGTGCAACAACCTGTTCTTGTTTTCCCAGGAGCATATAGGACAGTTTCTATAGAGTTGAAGATTCATCATCTTGCAGTAAATGCAATATTGAAGAGCAACCAGGTGAATGAAATGGAAGGAGGAACATTATTAGGATTTGAGCTAGATGGCAAAGGAGGGGGAGGACAGTTTGGCAGTGAATCAACAAGCTGGGATGAAGCAACTTCTTGTGCACCTGCCTTTCGTATTTTGAAGCAAATGGTTCAAGGATGTGTAGCTGATGCAGTTTCCTCTGGAAACATTTTCGCAGATGCTTTGCTGCAACATATATATCGCTGGCTTGGCAGTCCACAGTCAAAGCTACATGATCCAGCTCTTCATCGAGTTCTACAAAAGGTTATGCAAAAAGTATTTGCTCTACTAATAGCAGAATTCCGCAAACTTGGGGCAACCATCATCTATGCAGATTTCTCCAGAATCATTATAGATACCGGAAAAGTGAATGTAATAACAGCTCAAGGCTACTGTGAATACCTTCTGAAAACCCTTCAAAGCAGGGAACTTTTTGAATGGATTGAGCTAGAGCCTCAGCGTTTTTGGCACTCTCTTCTATTCATGGACCAGTATAACTATGGAGGAATTCAGGCAAAGTCTGTTGCTGGAACAGAGTCAATTAATTCAGTTTTAGAGGCTGATACTCAACCAGACATAGTATCAAGCTGGAATATTGCAGAGTATCTACCCAAGGCTATCCAGGATTACTTTGTCGTCATAGTGTCTGAATTTATATATAGCCCTTGGAAACATTCACAAGAGCAGGCTGCATTGCATGCTGCTGCAAGGGAGGGGAGTCTCTGCACACCTTCAGTTACAGTTGCAGCAGCAGCGGATCTTGAATTGGAGGAAGTCTCATTCCTGAAGGAGCAGATTGCTTCATACTTTACAGATAAGCTTCTGAGGGTTGTCCGTGATATACTGCGTCATATTACTGCTAAAGGAAGAAAAGAGGATGCTTCTGCAGAGGCTGTTTCCCATGAATTCCCAAAACTAGCTGGTTCTCACTTACCAATGGGTGATGGTGCTTTGGAATTCATTAAGCATGTTTGTGCCGTTCTTGCTCTTGATCAACGTGTTCAACATGATGTTTTGGTAATGCGAAAAAACCTTTTAAAGTTGGTCCATGTAAAAGAGTTTTCTCCAGAGGCAGAATTTCATGATCCATGCCTGTCATTCACTCTTCCTAATGTGATTTGCAGTTATTGCAATGACTGCAGGGACTTGGATCTATGCCGTGACGCTGCATTGCTAGAGCATGATTGGCGATGTTCTGTGCCACAGTGTGGTCAGCCATACAACAAAGAGTGGATTGAAAACGCACTACTCCAAATTGTACGCCAAAGGGAGCGCCTGTACCACGTACAAGACCTTGTATGTTCAAAGTGTCGCCAAGTGAAGTCATCCCATCTTACTGAGCAATGCAGTTGTGCGGGTTCATTCCTTTGTAAAGATGATCCCAGGGGTTTCCTTGGCAAAATGCGGGTCTTCCTCAACATTGCAGTTTATCACCAATTCCAACTTCTTAGAGAGTGCATTTCATGGGTGTTAGAGATCAACTAG___ATCCGTTGTCGTTCTCAACACATGTTGTAAAATATGAATATATAAAAGCTGTTGTCCAATAACGGGCAAATGGTATCATTGACGTGCAATAGCATTTAAACTCAGCATATGAATGTGTTTATTGAGTTTTTTGGTTTAGATGGGATTGATCAAAATCAACTGTCTGCATAATTTTCTTTTGTAAAAAATATTTCAAGATCCTTTGAAATAGTTGTAT

Fln Alignment:

Contig1887___EGRGLFALHIPASNMVSVIVVNPFQNRELSSGQIEKQFREGLRCSGTSNMDTHSDSIPTVFKVDYVSSIADAGKLLQRTLNDYRDQHRGPTLSVIECPNTEQLNAVIPVLLDFPCIKVPCNARDSQYQALGWQSMAAKTGMQRCAASSQWLNERIALSRYAHVPIGNFDLDWLLFTADIFYSRALHDHQQVLWISDDGIPDLGGIPEEEPSFLDEVQQPVLVFPGAYRTVSIELKIHHLAVNAILKSNQVNEMEGGTXXXXXXXXXXXXXXXXSESTSWDEATSCAPAFRILKQMVQGCVADAVSSGNIFADALLQHIYRWLGSPQSKLHDPALHRVLQKVMQKVFALLIAEFRKLGATIIYADFSRIIIDTGKVNVITAQGYCEYLLKTLQSRELFEWIELEPQRFWHSLLFMDQYNYGGIQAKSVAGTESINSVLEADTQPDIVSSWNIAEYLPKAIQDYFVVIVSEFIYSPWKHSQEQAALHAAAREGSLC--TPSVTVXXXXDLELEEVSFLKEQIASYFTDKLLRVVRDILRHITAKGRKEDASAEAVSHEFPKLAGSHLPMGDGALEFIKHVCAVLALDQRVQHDVLVMRKNLLKLVHVKEFSPEAEFHDPCLSFTLPNVICSYCNXXXXXXXXXXXXXXEHDWRCSVPQCGQPYNKEWIENALLQIVRQRERLYHVQDLVCSKCRQVKSSHLTEQCSCAGSFLCKDDPRGFLGKMRVFLNIAVYHQFQLLRECISWVL
A9SXI7______________ENRGLYALYTPVISRILVVVVNPFNNREIAIAQLERQFRDAVRNQSQSNVDTSE----LTCKVEYVSSNADAGRLLQKTLIEYRDQHRGPTLAVVECPNLDTTKNTISALSELPCIQVSCNARDSNYQTLGWQPLAGRVAMQRCAASSIWLQERITLARYAHVPLGNFDSDWLLFTADTFYARALRDHMQVLWVSNDGIPDLGGVPEEEPSFADE---PALIFPGAYRSISIELKVHHLAVNALLKSSQINELEGGALLGFNSESQDAVSLGVGQ-TNWDESVSCAPAFRILKQLVQGWLSDAVSSGNTFADVLLQHLYRWLCSPTSKMHDPALHRILHKIMQKVFALLLAELRKLRATIVFADFSRIIIATGKYNMAAAQGYCEYLLKTLKSRELFEWLELEPKRYWHALLFMDQYNYGGIQAKDDPTQNGAN---------EIISSWNIAEFLPKVTQDYFVVIVSEYIYIPWKHSQDQAALLAAARGGDFASSTPSVSISTASDAEAQEVSYLKEQIASYFTDKLLRVVRDVQRHINARRDEEDSEAQ-LSRQFPKLAGSHLVMTDPALEFIKQVCAVLALDNRVQHNVMVMRKNLLKLVHVREFSAEAAFEDPCRSFTLPNVICSYCNDCRDLDLCRDAALLEHDWRCVVPSCGQPYDRAWIENALLQIVRQRERLYHLQDLVCVKCRQVKSSHLADQCQCAGAFKNTTSPAVFEKELQVFLNIAKYHGFELLEEVVTWLV

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
881		75		25	0.996473
907		25		75	0.996473
1006		33		66	0.997452
1078	33		66		0.997452
1176			75	25	0.996473
1266	20		80		0.995493
1299	20		80		0.995493
1333	20		80		0.995493
1337			80	20	0.995493
1342			25	75	0.996473
2441	66	33			0.997452
2446		66	33		0.997452
2447	33		66		0.997452
2450	66			33	0.997452
2451	66			33	0.997452
2455	66	33			0.997452
2456	66			33	0.997452
2463		66		33	0.997452
2638		33		66	0.997452
2666	25			75	0.996473
2675		33		66	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain