SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1875

Length: 5252 nt

UniGene Fasta

>sp_v3.0_unigene1875
CACCTAAATATATTCTTCGTTTGGAGCTTCATCAGGAGGTGCAGAGTTCAAATATTGCGCGTACCAATTTTCCTTCCCCAAATGGCAAAGAGCGACGATGCTGCTGATGACGCCAAAAAAGGAGAGGAAGTCACTTGCATGGCTGAAAGATTGAGAATCCGGTCAGGAAAAAAACCATCTTATAATGAAGCAGAAGAAGTGGAGGATGAGCCAGATTGGAAGGAGCCGGAAGGAGAAACAATATATGCTGCGACCCAACCGTCCAAAATATTGAGAACAAATACAGTTAATCCCCTATCAGAGGTTGATAAAATTTTAGATAGCCAAATGAGACCAGCAAATGCAGACACTGATGAAGATTCAAGTTCCGGGCACTCAACTAAAAAATTGGTCAAACAATATTTAGTGAAGTGGAAGTCATTGTCTTACCTTCATTGTTCATGGGTTCCTCTCGAAGAATTTGAGAAGGTTTTCAAGATATACCCACGTCTCAAGACAAGAATAAACAATTTTCATCGCCAAATGGATTCACTGAATATTTCCGAAGAGGATTGGGTTCCAATTCGATCAGAGTGGACAACTGTGGATAGAATCATTGCTAGCAGGATGTCTAATGATGGGCGGGAATATCTAGTTAAATGGAAAGAGCTAGCTTATGATGAATGCACGTGGGAAGTTGAGGAAGATATCTCTGCTTTTCGAGCGGAAATTGAAAAATTCAATTCAATTAAAGCTAGGGCAAAGATCCAAAATCAAACACCAAAGAAGAGGAAAGGTTTTTCTGTTGATGGAAAAGAAAATAAGCGCCATCGAAAAAATTTTCAACAATATGATCAGACTCCAGAGTTTATTGTGGGAGGCACATTACATCCATATCAACTTGAGGGGTTAAATTTCCTACGATTTGCATGGCTCAAGGGGACACATGTTATTCTTGCAGATGAAATGGGTCTTGGTAAAACTGTGCAGAGTATCTCTTTCCTCGCATCTCTTGCTGAAGAGTCTGTTTCTTCTCCTCATTTGGTTGTGGCACCGCTTTCTACGTTGCGAAACGGGGAACGTGAATTTGCCACCTGGGCTCCACACATGAATGTTGTAATGTATGTAGGGACTGCACCAGCTCGTTCTGTCATCAGGCAATATGAATTTTTCTTTCCTAAGAAAGTCAAGCCATTGAAGAAACACAAAGGCAAAAAGAAGTCAGGTTCTGTTCCTAGTCGAGAGAAACAAGAAAGGATAAAATTTGATGTTCTCTTGACATCCTATGAAATGATAAACTTGGATACTGCAACTTTAAAGCAAATCAAATGGGAGTGCATGATAGTTGATGAAGGTCACAGGCTTAAGAACAAAGATTCTAAGCTTTTTCAGACTTTGAAACAATATACAACAAATCATAGAGTATTGTTAACTGGCACACCACTCCAGAATAATCTGGATGAGCTCTTCATGCTAATGCACTTTCTGGATGCAGGAAAGTTTGGCAGCTTGGAGGAATTTCAACGGGAGTTTGAAGATATTAGTCAGGAGGAACAAGTTGGGAGATTGCACTTGATGTTGGCACCTCATCTTCTTCGAAGAGTGAAGAAGGATGTGATGAAAGATTTACCACCCAAAAAGGAACTTATTCTGCGTGTTGAATTAAGTTCTATGCAGAAAGAATACTATAGGGCCATTCTTACACGTAACTATCAGTTACTTGCTCGCCGTGTTGGGCCACAGGTTTCTCTGAATAATGTAGTAATGGAACTAAGGAAGGTCTGTGCACATCCTTACATGTTGGAAGGAACGGACCCAATTATCAACAATAAACAGGAGGCTTACAGACACTTTGAAAATGCAGACAGCTGTTGGAGGCTTCTGGAAAATTATATTTGTTGGACAAGATGATGGTAAAACTTAAAGATCAAGGACATAGAGTACTTATTTATTCACAATTTCAACATATGTTAGACATATTAGAAGATTATCTCAGTTACAAGCATTGGAACTATGAAAGGATTGATGGAAAAATAAGTGGAGTTGAAAGACAAATACGAATTGATCGGTTCAATGCACCTAATTCTACAAGATTTTGTTTTATACTTTCAACACGAGCAGGAGGAGTGGGGATCAACCTGGCCACCGCAGATACTGTTATAATATATGACAGTGACTGGAATCCACATGCAGATTTGCAGGCAATGGCTAGGGCTCATCGCCTTGGACAGACCAATAAGGTGATGATTTTCAGGCTTGTTAATAGGGGAACTATTGATGAGCGAATGATGCAGCTGACAAAGAAGAAAATGATTCTTGAGCACCTTGTTGTTGGTCGTCTGAAAACTCAAACAGGCCTCAATCAGGAAGAGTTAGATGATATCTTGCGGTATGGAGCGCAAGAGCTGTTTGCTGACTCAAATGATGAAGCTGTCAGGGCACGCCAAATTCACTATGATGATGCAGCTATAGAGAGATTGCTGGATCGGGCTCAAGTCGATAGTGAAGATTCATTGGCTGATGAAGAAGAAGAAAATGGATTTTTGAAGGCGTTCAAGGTGGCAAATTTTGAGTATGTAGATGAAGAAGAGGCTGAAGCAGCTAGAGCTGAAGAGGCAAGAAAGCAAGCAGAGGCAGATCGCAAATTTGCAGAAGCCACTGCTGCAGAAAGAGCCCACTATTGGGATAACCTTTTGAAGGACAAGTATGAGGATCAACGGATTGAGGAAAGGACAGAGCTTGGGAAAGGAAAGCGCAGTCGAAAACAAATTGTATCTATTGAAGAGGATGATTTGGCTGGATTGGCAGACGTCAGTTCAGATGATGAAGAGGAGGATCGAGAAGGTGATTGGATGGAAACAGAGGCTTCTGGTTCAGGCAGAGGATTGACAGATTCATCTGGAAGAAAGTCACATGCTGCAAGAAAGCGGTCACGAGTGGATACAGTAGAACCGCCACCTCTAATGGAAGGTGAGGGAAAAGCATTCAAAGTACTAGGATTCACCCAAAGTCAACGTGCAACTTTTGTACAAATATTGATGAGGTTCGGTTTGGGAGATTTTGATTGGTGTGAATTTATTCCTCGAATGAAGCAGAAAACTCCTGAGGAGATTACTGAGTATGGCATTCTCTTTCTAACTCATATATCCGAGGATATAACTGATTCACCGACATTTTCTGATGGTGTACCTAAAGAAGGTCTACGGATACAAGATGTTCTTGTTCGCCTTGCATTTTTGCAGCTGATAAAAGACAAGGTGAAGTTATTAGCAGAAAATCCTGCTATACCATTGTTTGCCATTGATATCTACAATAAATTTCCTGGACTAAAGAACTCCAGAATTTGGAAGGAGGAACATGATTCCAAGCTGCTACAAGCTATTCTGAAGCATGGTTATGGGAGATGGCATGCTATTGTAGAGGACAATGATCTTGGGTTTCAACATGTCATCCGAAAGGAGTTGCAGCTACCACCCTTAAATATATCTACCGTGGGAGATCCATTATATAAAAATGCTGGAGTCTCTTCTGCTATAGAAAACAAGGGTTCCCATATACAGGAAGATGGCTGTAGCAGCATGGTAGAAGGTCAAGCGAGGTTACCTTCTGTAGAACGTGCTTGTGATGTTGCAGGTGTTGGTGAAGTGGTAGCAACATTGGCAACTGAGAAGAGAAGCCAGCTGCCTCAAGCTGGATCTTCAGAGAATCTTCTTGCCCAATTAAGAGATGTACAAAAGAGGCTCCTTGAGTTTATTAGAAAGAGGGTATCACATCTAGAAAAAGCACTGAATGCTGAATACCATAAGGAGTCAATAATTGCAGAGCAGAAGGAATTTGAGTCTATCAATGAAGAACCTGAGCAAGAGGCTAGAGATGCACATGTACCAAGCCCTGCAAATCAACCACTGGCAGAAATTGGTAGCGCTGCCTTTTCTGCTCTATCAGCTCTAGATCCAGAAGAGGTGTCAACACATGCTTTTGATAATGATTCAAATCGCCTGGAATTAGCTAGACTTTACAACGAGATGTGTAAGGTGATTAATGAAAATGAGCAAGAATCATTTCAAACATATACAGGAAATAAGTCAGCTGGGCTTCGTTTGAGGAGAAATCTTCGCCCCCTTGACAGCTTGTGTGAAGGAGTTTGGAAAATTCTCAAAGTCCAGCAGGTTTCTGCAGATTTCAGTGCGGGCTTGAATCAATCATCCATGCAGAGTGAGGATCATATCAATGGTGAAGATCACATCAATGGTGAAGATGCTGATGTTCAATCAGATAGTCATGAGGATGACTTGGGTGCAGGTGACGAGGTCAATTCTGACAGCAAACAACACTTGGCTAATTCCAAAGCATCACCAAAGAAATCTGGGAATTCAGGTGTTGGTATATTCTCTTCAATGACAGCGACTGCATCAACTCCAAGGAGGGGCTTTCAAAGTGCACAGGAAGCGTGCTGTAATACAAACTCTGCAGATTTATTGACATCATATCCAAAAGGTGGAGCAAACATTGAGGTAATGGAAGGGAAAGAAGATAGAAGTGGATGCTTGCTGACGACTCCAAGAGTCATTGTCCTGGATGATTAAGCACTGGGAATACTGGATAATTAAATCAATGAATCCTCTTATAGATATGGCGCAGAAAAGTTCACCTTGCTGCCTAACATTCCTAAAGTCCTGTCCTGTGCTTGTAATTTCTTTCATTGGAAAATTTTGAATCACTGTCAACATAAAACTTGATCTCAGTTCATCCAGGAGCAAGATTAATCATTTTTTGTTCCTGTATAATATTATATTATTTGTCATGGAGATGGGCAATGCTTCAGACTTCAGATCCTATCAACTTTCAGGCATTATTCATTGTGAGTGCCTGGTGAGAGTCGAAAGTTAAAGCACAGGAAAGCAAACTTCTTGTTATGTACTCGTGGGTGTGGACGACAATCATTGTTTCGAAGAATCATGTTTACATGCTGAATGCATTTAATTGTTCTAGAACACCAACGATGCTGAAACATATGAGTGTTTTACCTCTTGTATATATTTCTAGGCCTCGTGCAATCTAATCAGAGGAGCCAATTATGTGATTGATTCAAATTTCACTAGTACATTACCATTTTGGCAGTCTTTCATGATTGTCAGACTGGCAACATATTCTTGTTCTATCGTTACAGACGAGATTAAATCCTTGATTGGGGATCTTATTTGAAATGATTTATTTGAAAAATTTGCGGAACGCTTGTGAAATAAAACAGGTAAGATCTTTGAAAATCCAAG

Ace file of the UniGene sp_v3.0_unigene1875

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SNF2 family DNA-dependent ATPase (Fragment) n=2 Tax=Physcomitrella patens subsp. patens RepID=A9TI22_PHYPA	-	-	0.0	57%
FL-Next	sp=CHD3-type chromatin-remodeling factor PICKLE; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	59%
Sma3	Chromatin remodeling complex subunit	-	-	1.086e-16	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific serine/threonine protein kinase.	EC:2.7.11.1	-	5.453e-06	-

Source	Gene names
Sma3	AT4g31900; At2g25170; At3g06400; At4g31900; At5g18620; At5g44800; B1329D01.23; CHLREDRAFT_135484; CHLREDRAFT_173539; CHR1503; CHR1504; CHR1512; CHR1527; CHR1529; CHR3503; CHR906; CHR907; CHR909; CHR911; CHR914; CHR915; CHR926; F13D4.130; F24P17.13; GSVIVT

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	chromatin remodeling complex	GO:0016585	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	nucleosome binding	GO:0031491	Molecular Function	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	embryo sac development	GO:0009553	Biological Process	-
Sma3	cell growth	GO:0016049	Biological Process	-
Sma3	ATP-dependent chromatin remodeling	GO:0043044	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3		IPR000910	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Bromodomain	IPR001487	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Rubredoxin-type fold	IPR004039	-	-
Sma3	Agenet	IPR008395	-	-
Sma3	Domain of unknown function DUF1086	IPR009462	-	-
Sma3	Domain of unknown function DUF1087	IPR009463	-	-
Sma3		IPR012287	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	Helicase/SANT-associated, DNA binding	IPR014012	-	-
Sma3		IPR014021	-	-
Sma3		IPR014778	-	-
Sma3	ATPase, nucleosome remodelling ISWI, HAND domain	IPR015194	-	-
Sma3	SLIDE domain	IPR015195	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Myb-like domain	IPR017877	-	-
Sma3	SANT domain	IPR017884	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Bromodomain, conserved site	IPR018359	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G25170.1	PKL, GYM, CHD3, CHR6, SSL2 chromatin remodeling factor CHD3 (PICKLE) chr2:10714411-10723763 FORWARD LENGTH=1384	50%
RefSeq	Arabidopsis thaliana	NP_565587.1	CHD3-type chromatin-remodeling factor PICKLE [Arabidopsis thaliana]	50%
RefSeq	Populus trichocarpa	XP_002309665.1	chromatin remodeling complex subunit, partial [Populus trichocarpa]	53%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9S775

Fln msg: Overlapping hits, possible frame ERROR between 1860 and 1842, your sequence is longer than subject: 1495 - 1384

Fln protein: MAKSDDAADDAKKGEEVTCMAERLRIRSGKKPSYNEAEEVEDEPDWKEPEGETIYAATQPSKILRTNTVNPLSEVDKILDSQMRPANADTDEDSSSGHSTKKLVKQYLVKWKSLSYLHCSWVPLEEFEKVFKIYPRLKTRINNFHRQMDSLNISEEDWVPIRSEWTTVDRIIASRMSNDGREYLVKWKELAYDECTWEVEEDISAFRAEIEKFNSIKARAKIQNQTPKKRKGFSVDGKENKRHRKNFQQYDQTPEFIVGGTLHPYQLEGLNFLRFAWLKGTHVILADEMGLGKTVQSISFLASLAEESVSSPHLVVAPLSTLRNGEREFATWAPHMNVVMYVGTAPARSVIRQYEFFFPKKVKPLKKHKGKKKSGSVPSREKQERIKFDVLLTSYEMINLDTATLKQIKWECMIVDEGHRLKNKDSKLFQTLKQYTTNHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQREFEDISQEEQVGRLHLMLAPHLLRRVKKDVMKDLPPKKELILRVELSSMQKEYYRAILTRNYQLLARRVGPQVSLNNVVMELRKVCAHPYMLEGTDPIINNKQEAYRHFENxxxxxxxxGKLYLLDKMMVKLKDQGHRVLIYSQFQHMLDILEDYLSYKHWNYERIDGKISGVERQIRIDRFNAPNSTRFCFILSTRAGGVGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLVNRGTIDERMMQLTKKKMILEHLVVGRLKTQTGLNQEELDDILRYGAQELFADSNDEAVRARQIHYDDAAIERLLDRAQVDSEDSLADEEEENGFLKAFKVANFEYVDEEEAEAARAEEARKQAEADRKFAEATAAERAHYWDNLLKDKYEDQRIEERTELGKGKRSRKQIVSIEEDDLAGLADVSSDDEEEDREGDWMETEASGSGRGLTDSSGRKSHAARKRSRVDTVEPPPLMEGEGKAFKVLGFTQSQRATFVQILMRFGLGDFDWCEFIPRMKQKTPEEITEYGILFLTHISEDITDSPTFSDGVPKEGLRIQDVLVRLAFLQLIKDKVKLLAENPAIPLFAIDIYNKFPGLKNSRIWKEEHDSKLLQAILKHGYGRWHAIVEDNDLGFQHVIRKELQLPPLNISTVGDPLYKNAGVSSAIENKGSHIQEDGCSSMVEGQARLPSVERACDVAGVGEVVATLATEKRSQLPQAGSSENLLAQLRDVQKRLLEFIRKRVSHLEKALNAEYHKESIIAEQKEFESINEEPEQEARDAHVPSPANQPLAEIGSAAFSALSALDPEEVSTHAFDNDSNRLELARLYNEMCKVINENEQESFQTYTGNKSAGLRLRRNLRPLDSLCEGVWKILKVQQVSADFSAGLNQSSMQSEDHINGEDHINGEDADVQSDSHEDDLGAGDEVNSDSKQHLANSKASPKKSGNSGVGIFSSMTATASTPRRGFQSAQEACCNTNSADLLTSYPKGGANIEVMEGKEDRSGCLLTTPRVIVLDD*

Protein Length: 1496

Fln nts: CACCTAAATATATTCTTCGTTTGGAGCTTCATCAGGAGGTGCAGAGTTCAAATATTGCGCGTACCAATTTTCCTTCCCCAA_-_ATGGCAAAGAGCGACGATGCTGCTGATGACGCCAAAAAAGGAGAGGAAGTCACTTGCATGGCTGAAAGATTGAGAATCCGGTCAGGAAAAAAACCATCTTATAATGAAGCAGAAGAAGTGGAGGATGAGCCAGATTGGAAGGAGCCGGAAGGAGAAACAATATATGCTGCGACCCAACCGTCCAAAATATTGAGAACAAATACAGTTAATCCCCTATCAGAGGTTGATAAAATTTTAGATAGCCAAATGAGACCAGCAAATGCAGACACTGATGAAGATTCAAGTTCCGGGCACTCAACTAAAAAATTGGTCAAACAATATTTAGTGAAGTGGAAGTCATTGTCTTACCTTCATTGTTCATGGGTTCCTCTCGAAGAATTTGAGAAGGTTTTCAAGATATACCCACGTCTCAAGACAAGAATAAACAATTTTCATCGCCAAATGGATTCACTGAATATTTCCGAAGAGGATTGGGTTCCAATTCGATCAGAGTGGACAACTGTGGATAGAATCATTGCTAGCAGGATGTCTAATGATGGGCGGGAATATCTAGTTAAATGGAAAGAGCTAGCTTATGATGAATGCACGTGGGAAGTTGAGGAAGATATCTCTGCTTTTCGAGCGGAAATTGAAAAATTCAATTCAATTAAAGCTAGGGCAAAGATCCAAAATCAAACACCAAAGAAGAGGAAAGGTTTTTCTGTTGATGGAAAAGAAAATAAGCGCCATCGAAAAAATTTTCAACAATATGATCAGACTCCAGAGTTTATTGTGGGAGGCACATTACATCCATATCAACTTGAGGGGTTAAATTTCCTACGATTTGCATGGCTCAAGGGGACACATGTTATTCTTGCAGATGAAATGGGTCTTGGTAAAACTGTGCAGAGTATCTCTTTCCTCGCATCTCTTGCTGAAGAGTCTGTTTCTTCTCCTCATTTGGTTGTGGCACCGCTTTCTACGTTGCGAAACGGGGAACGTGAATTTGCCACCTGGGCTCCACACATGAATGTTGTAATGTATGTAGGGACTGCACCAGCTCGTTCTGTCATCAGGCAATATGAATTTTTCTTTCCTAAGAAAGTCAAGCCATTGAAGAAACACAAAGGCAAAAAGAAGTCAGGTTCTGTTCCTAGTCGAGAGAAACAAGAAAGGATAAAATTTGATGTTCTCTTGACATCCTATGAAATGATAAACTTGGATACTGCAACTTTAAAGCAAATCAAATGGGAGTGCATGATAGTTGATGAAGGTCACAGGCTTAAGAACAAAGATTCTAAGCTTTTTCAGACTTTGAAACAATATACAACAAATCATAGAGTATTGTTAACTGGCACACCACTCCAGAATAATCTGGATGAGCTCTTCATGCTAATGCACTTTCTGGATGCAGGAAAGTTTGGCAGCTTGGAGGAATTTCAACGGGAGTTTGAAGATATTAGTCAGGAGGAACAAGTTGGGAGATTGCACTTGATGTTGGCACCTCATCTTCTTCGAAGAGTGAAGAAGGATGTGATGAAAGATTTACCACCCAAAAAGGAACTTATTCTGCGTGTTGAATTAAGTTCTATGCAGAAAGAATACTATAGGGCCATTCTTACACGTAACTATCAGTTACTTGCTCGCCGTGTTGGGCCACAGGTTTCTCTGAATAATGTAGTAATGGAACTAAGGAAGGTCTGTGCACATCCTTACATGTTGGAAGGAACGGACCCAATTATCAACAATAAACAGGAGGCTTACAGACACTTTGAAAATxxxxxxxxxxxxxxxxxxxxxxxxGGAAAATTATATTTGTTGGACAAGATGATGGTAAAACTTAAAGATCAAGGACATAGAGTACTTATTTATTCACAATTTCAACATATGTTAGACATATTAGAAGATTATCTCAGTTACAAGCATTGGAACTATGAAAGGATTGATGGAAAAATAAGTGGAGTTGAAAGACAAATACGAATTGATCGGTTCAATGCACCTAATTCTACAAGATTTTGTTTTATACTTTCAACACGAGCAGGAGGAGTGGGGATCAACCTGGCCACCGCAGATACTGTTATAATATATGACAGTGACTGGAATCCACATGCAGATTTGCAGGCAATGGCTAGGGCTCATCGCCTTGGACAGACCAATAAGGTGATGATTTTCAGGCTTGTTAATAGGGGAACTATTGATGAGCGAATGATGCAGCTGACAAAGAAGAAAATGATTCTTGAGCACCTTGTTGTTGGTCGTCTGAAAACTCAAACAGGCCTCAATCAGGAAGAGTTAGATGATATCTTGCGGTATGGAGCGCAAGAGCTGTTTGCTGACTCAAATGATGAAGCTGTCAGGGCACGCCAAATTCACTATGATGATGCAGCTATAGAGAGATTGCTGGATCGGGCTCAAGTCGATAGTGAAGATTCATTGGCTGATGAAGAAGAAGAAAATGGATTTTTGAAGGCGTTCAAGGTGGCAAATTTTGAGTATGTAGATGAAGAAGAGGCTGAAGCAGCTAGAGCTGAAGAGGCAAGAAAGCAAGCAGAGGCAGATCGCAAATTTGCAGAAGCCACTGCTGCAGAAAGAGCCCACTATTGGGATAACCTTTTGAAGGACAAGTATGAGGATCAACGGATTGAGGAAAGGACAGAGCTTGGGAAAGGAAAGCGCAGTCGAAAACAAATTGTATCTATTGAAGAGGATGATTTGGCTGGATTGGCAGACGTCAGTTCAGATGATGAAGAGGAGGATCGAGAAGGTGATTGGATGGAAACAGAGGCTTCTGGTTCAGGCAGAGGATTGACAGATTCATCTGGAAGAAAGTCACATGCTGCAAGAAAGCGGTCACGAGTGGATACAGTAGAACCGCCACCTCTAATGGAAGGTGAGGGAAAAGCATTCAAAGTACTAGGATTCACCCAAAGTCAACGTGCAACTTTTGTACAAATATTGATGAGGTTCGGTTTGGGAGATTTTGATTGGTGTGAATTTATTCCTCGAATGAAGCAGAAAACTCCTGAGGAGATTACTGAGTATGGCATTCTCTTTCTAACTCATATATCCGAGGATATAACTGATTCACCGACATTTTCTGATGGTGTACCTAAAGAAGGTCTACGGATACAAGATGTTCTTGTTCGCCTTGCATTTTTGCAGCTGATAAAAGACAAGGTGAAGTTATTAGCAGAAAATCCTGCTATACCATTGTTTGCCATTGATATCTACAATAAATTTCCTGGACTAAAGAACTCCAGAATTTGGAAGGAGGAACATGATTCCAAGCTGCTACAAGCTATTCTGAAGCATGGTTATGGGAGATGGCATGCTATTGTAGAGGACAATGATCTTGGGTTTCAACATGTCATCCGAAAGGAGTTGCAGCTACCACCCTTAAATATATCTACCGTGGGAGATCCATTATATAAAAATGCTGGAGTCTCTTCTGCTATAGAAAACAAGGGTTCCCATATACAGGAAGATGGCTGTAGCAGCATGGTAGAAGGTCAAGCGAGGTTACCTTCTGTAGAACGTGCTTGTGATGTTGCAGGTGTTGGTGAAGTGGTAGCAACATTGGCAACTGAGAAGAGAAGCCAGCTGCCTCAAGCTGGATCTTCAGAGAATCTTCTTGCCCAATTAAGAGATGTACAAAAGAGGCTCCTTGAGTTTATTAGAAAGAGGGTATCACATCTAGAAAAAGCACTGAATGCTGAATACCATAAGGAGTCAATAATTGCAGAGCAGAAGGAATTTGAGTCTATCAATGAAGAACCTGAGCAAGAGGCTAGAGATGCACATGTACCAAGCCCTGCAAATCAACCACTGGCAGAAATTGGTAGCGCTGCCTTTTCTGCTCTATCAGCTCTAGATCCAGAAGAGGTGTCAACACATGCTTTTGATAATGATTCAAATCGCCTGGAATTAGCTAGACTTTACAACGAGATGTGTAAGGTGATTAATGAAAATGAGCAAGAATCATTTCAAACATATACAGGAAATAAGTCAGCTGGGCTTCGTTTGAGGAGAAATCTTCGCCCCCTTGACAGCTTGTGTGAAGGAGTTTGGAAAATTCTCAAAGTCCAGCAGGTTTCTGCAGATTTCAGTGCGGGCTTGAATCAATCATCCATGCAGAGTGAGGATCATATCAATGGTGAAGATCACATCAATGGTGAAGATGCTGATGTTCAATCAGATAGTCATGAGGATGACTTGGGTGCAGGTGACGAGGTCAATTCTGACAGCAAACAACACTTGGCTAATTCCAAAGCATCACCAAAGAAATCTGGGAATTCAGGTGTTGGTATATTCTCTTCAATGACAGCGACTGCATCAACTCCAAGGAGGGGCTTTCAAAGTGCACAGGAAGCGTGCTGTAATACAAACTCTGCAGATTTATTGACATCATATCCAAAAGGTGGAGCAAACATTGAGGTAATGGAAGGGAAAGAAGATAGAAGTGGATGCTTGCTGACGACTCCAAGAGTCATTGTCCTGGATGATTAA___GCACTGGGAATACTGGATAATTAAATCAATGAATCCTCTTATAGATATGGCGCAGAAAAGTTCACCTTGCTGCCTAACATTCCTAAAGTCCTGTCCTGTGCTTGTAATTTCTTTCATTGGAAAATTTTGAATCACTGTCAACATAAAACTTGATCTCAGTTCATCCAGGAGCAAGATTAATCATTTTTTGTTCCTGTATAATATTATATTATTTGTCATGGAGATGGGCAATGCTTCAGACTTCAGATCCTATCAACTTTCAGGCATTATTCATTGTGAGTGCCTGGTGAGAGTCGAAAGTTAAAGCACAGGAAAGCAAACTTCTTGTTATGTACTCGTGGGTGTGGACGACAATCATTGTTTCGAAGAATCATGTTTACATGCTGAATGCATTTAATTGTTCTAGAACACCAACGATGCTGAAACATATGAGTGTTTTACCTCTTGTATATATTTCTAGGCCTCGTGCAATCTAATCAGAGGAGCCAATTATGTGATTGATTCAAATTTCACTAGTACATTACCATTTTGGCAGTCTTTCATGATTGTCAGACTGGCAACATATTCTTGTTCTATCGTTACAGACGAGATTAAATCCTTGATTGGGGATCTTATTTGAAATGATTTATTTGAAAAATTTGCGGAACGCTTGTGAAATAAAACAGGTAAGATCTTTGAAAATCCAAG

Fln Alignment:

Contig1875___VTCMAERLRIRSGKKPSYNEAEEVEDE-----------------PDWKEPEGETIYAATQPSKILRTNT---------------------------VNPLSEVDKILDSQMRPANADTDEDSSSGHSTKKLVKQYLVKWKSLSYLHCSWVPLEEFEKVFKIYPRLKTRINNFHRQMDSLNISEEDWVPIRSEWTTVDRIIASRMSNDGREYLVKWKELAYDECTWEVEEDISAFRAEIEKFNSIKARAKIQNQTPKKRKGFSVDGKENKRHRKNFQQYDQTPEFIVGGTLHPYQLEGLNFLRFAWLKGTHVILADEMGLGKTVQSISFLASLAEESVSSPHLVVAPLSTLRNGEREFATWAPHMNVVMYVGTAPARSVIRQYEFFFXXXXXXXXXXXXXXXXXXXXXREKQERIKFDVLLTSYEMINLDTATLKQIKWECMIVDEGHRLKNKDSKLFQTLKQYTTNHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQREFEDISQEEQVGRLHLMLAPHLLRRVKKDVMKDLPPKKELILRVELSSMQKEYYRAILTRNYQLLARRVGPQVSLNNVVMELRKVCAHPYMLEGTDPIINNKQEAYRHxxxxxxxxxxYLLDKMMVKLKDQGHRVLIYSQFQHMLDILEDYLSYKHWNYERIDGKISGVERQIRIDRFNAPNSTRFCFILSTRAGGVGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLVNRGTIDERMMQLTKKKMILEHLVVGRLKTQTGLNQEELDDILRYGAQELFADSNDEAVRARQIHYDDAAIERLLDRAQVXXXXXXXXXXXXNGFLKAFKVANFEYVDXXXXXXXXXXXXXXXXXXDRKFAEATAAERAHYWDNLLKDKYEDQRIEERTELGKGKRSRKQIVSIEEDDLAGLADVSSXXXXXXXXXXXXXXXASGSGRGLTDSSGRKSHAARKRSRVDTVEPPPLMEGEGKAFKVLGFTQSQRATFVQILMRFGLGDFDWCEFIPRMKQKTPEEITEYGILFLTHISEDITD-SPTFSDGVPKEGLRIQDVLVRLAFLQLIKDKVKLLAENPAIPLFAIDIYNKFPGLKNSRIWKEEHDSKLLQAILKHGYGRWHAIVEDNDLGFQHVIRKELQLPPLNISTVGDPLYKNAGVSSAIENKGSHIQEDGCSSMVEGQARLPSVERACDVAGVGEVVATLATEKRSQLPQAGSSENLLAQLRDVQKRLLEFIRKRVSHLEKALNAEYHKESIIAEQKEFESINEEPEQEARDAHVPSPANQPLAEIGSAAFSALSALDP---EEVSTHAFDNDSNRLELARLYNEMCKVINENEQESFQTYTGNKSAGLRLRRNLRPLDSLCEGVWKILKV---QQVSADFSAGLNQSSMQSEDHINGEDHINGEDADVQSDSHEDDLGAGDEVNSDSKQHLANSKASPK
Q9S775______________MSSLVERLRIRSDRKPVYNLDDSDDDDFVPKKDRTFEQVEAIVRTDAKE---NACQACGESTNLVSCNTCTYAFHAKCLVPPLKDASVENWRCPECVSPLNEIDKILDCEMRPTKS-SEQGSSDAEPKPIFVKQYLVKWKGLSYLHCSWVPEKEFQKAYKSNHRLKTRVNNFHRQMESFNNSEDDFVAIRPEWTTVDRILACREEDGELEYLVKYKELSYDECYWESESDISTFQNEIQRFKDVNSRT---------RRSKDVDHKRNPR---DFQQFDHTPEFLKG-LLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIALLASLFEENLI-PHLVIAPLSTLRNWEREFATWAPQMNVVMYFGTAQARAVIREHEFYLSKDQKKIKKKKSGQISS----ESKQKRIKFDVLLTSYEMINLDSAVLKPIKWECMIVDEGHRLKNKDSKLFSSLTQYSSNHRILLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKDMPPKKELILRVDLSSLQKEYYKAIFTRNYQVLTKKGGAQISLNNIMMELRKVCCHPYMLEGVEPVIHDANEAFKQxxxxxxxxxxQLLDKMMVKLKEQGHRVLIYTQFQHMLDLLEDYCTHKKWQYERIDGKVGGAERQIRIDRFNAKNSNKFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLINRGTIEERMMQLTKKKMVLEHLVVGKLKTQ-NINQEELDDIIRYGSKELFASEDDEAGKSGKIHYDDAAIDKLLDRDLVEAEEVSVDDEEENGFLKAFKVANFEYIDENEAAALEAQRVAA-----ESKSSAGNSDRASYWEELLKDKFELHQAEELNALGKRKRSRKQLVSIEEDDLAGLEDVSS-----DGDESYEAESTDGEAAGQGVQTGRRPYRRKGR---DNLEPTPLMEGEGRSFRVLGFNQSQRAIFVQTLMRYGAGNFDWKEFVPRLKQKTFEEINEYGILFLKHIAEEIDENSPTFSDGVPKEGLRIEDVLVRIALLILVQEKVKFVEDHPGKPVFPSRILERFPGLRSGKIWKEEHDKIMIRAVLKHGYGRWQAIVDDKELGIQELICKELNFPHISL--------------SAAEQAGLQGQNGSGGSNPGAQTN----------QNPGSVIT-----GNNNASADGAQVNSMFYYRDMQRRLVEFVKKRVLLLEKAMNYEY-AEEYYGLGGSSSIPTEEPEAEPK---IADTVGVSFIEVDDEMLDGLPKTDPITSEEIMGAAVDNNQARVEIAQHYNQMCKLLDENARESVQAYVNNQPPSTKVNESFRALKSINGNINTILSITSDQSKSHEDDTKPDLNNVEMKDTAEETKPLRGGVVDLNVVEGEENI-AEASGSVDVKMEEAKEEEKPK

SNPs (tot: 64)

Position	A %	C %	G %	T %	Probability
1351	75		25		0.996473
1452	20	80			0.995493
1453	20			80	0.995493
1455		80	20		0.995493
1456	80			20	0.995493
1614	80			20	0.995493
1782	80		20		0.995493
1788		20		80	0.995493
1834	60		40		1.0
1835		60		40	1.0
1836	60	40			1.0
1844	40		40		1.0
1846	40		40		1.0
1847	40		40		1.0
1850			40	40	1.0
1852	40			40	1.0
1854	50		25		0.995533
1966		80		20	0.995493
1967	80		20		0.995493
1968			20	80	0.995493
2069	66		33		0.997452
2115			75	25	0.996473
2117	75		25		0.996473
2118			25	75	0.996473
2162	16	83			0.994512
2163	83			16	0.994512
3143	83			16	0.994512
3144		16	83		0.994512
3146	83			16	0.994512
3147			16	83	0.994512
3149		16		83	0.994512
3150	83	16			0.994512
3151	83			16	0.994512
3152		83		16	0.994512
3153			16	83	0.994512
3155	83	16			0.994512
3161		83		16	0.994512
3234	14		85		0.993533
3483		90		10	0.90298
3649	11			88	0.923564
4277	75		25		0.996473
4403		83	16		0.994512
4423		16		83	0.994512
4524	88		11		0.923564
4582		90		10	0.90298
4798	21		78		1.0
4925	16		83		0.994512
4937	16			83	0.994512
4939			83	16	0.994512
4940	16			83	0.994512
4941			16	83	0.994512
5161	7	92			0.999664
5190		45		54	1.0
5192	54			45	1.0
5195		52		47	1.0
5197		57	42		1.0
5198	35		55		1.0
5199	35			55	1.0
5200	35	55			1.0
5205	55			35	1.0
5206		52		36	1.0
5212	11		66		0.999999
5213	66		11		0.999999
5218		14		85	0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
2502	2513	GAA GAA GAA GAA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain