SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1867

Length: 2649 nt

UniGene Fasta

>sp_v3.0_unigene1867
GGTAGCAAATGTTTTTAAAAACTGACAATGCCATGCACTAAATGTTACCATTCTTATAGACATCCTTCGTGGGCACACTGTTGCATTTGCCAGAAATTCGTGACTATTTCCATTGCCGCTTTTCATCAGTTTGAGGTGTGAACAAGGTTCCTGGGATTGCTGTTCTGTGTTGAGCTGGTTCATGGAAACACACTAATTTATCCTAGAGTTCACTGCCATTGGCTAGAAATGAGTTTTAATAGTTATTGTTTTTTGTAACATTGGTGAATACTTCCTGTTTCCATTTTTTCATCTGAATGTCTGCTTCGGATGATTAGGTTTCTTTCAGTATTCCGAAGGTGTGAAGGCATGATGAGTATTGTTTGTTATCGTCTGCCTGTCTCGGTTTCTTCAACCTGTCATTGTCGTACTCCATCCCGGATATATGGTGGTGGGAAGTCATATTGCTTTGTTCCTCACAGATTTGCAAGTTCTACTCCAGTGTTAGGTTGTTACTTTTTTCCCACCAAATTCATCTCTGCTACTACAGCATGGTTGTCACGGCTATGCAAATTTAAAGTTTGTGCAAGTGGAAGCAAGCAATATCTTCCTCCTCTGTTCAGTGTAGCACCAATGATGGACTGGACTGATAATCATTATAGGACCCTGGCACGTCTCATCTCTCATCATGCCTGGCTTTATACTGAAATGGTTGTGGCAGAGACTATTGTTCACCAACAGCACAATTTGGATAAATTTTTGGAAATCCCTGAAATGCAACATCCTGTAGTTCTTCAAATTGGTGGGAGTAACTTGTCAAACCTCGCAAAAGCGGCTGAACTTGCAAATGCCTATGGTTATGATGAAATCAATCTCAATTGTGGTTGCCCCAGTGAAAGAGTAGCTGGTCATGGATGCTTTGGCGCCCAACTTATGTTGAACCCTAAGCTTGTAGGAGAGGCAATGGCATCAATTTCTGCAAATTCTGATGTTCCTGTCAGTGTGAAATGTCGGATTGGAGTTGATGACCATGATACATATGATAAGCTTTGTACATTCATTGATACTGTTGCATCTTTGTCACCAACTAGACATTTCATTGTGCATGCTCGGAAAGCTCTGTTGAAAGGCCTTAGTCCAGCTGAGAATCGGACCATTCCTCCTCTGAAGTATGAATATGTCTTCAGCCTGATTCGTGATTTTCCTCATTTGGACTTCACCATAAATGGGGGCATTACCACTCTGCATCAGGTTAATTCGGCATTGCAAAAGGGAGTGTATGGAGTGATGATGGGACGTTCTGCATATAATACTCCATGGGCTACTCTAGGGCATGTTGATACTGCAGTTTATGGTGTGCCAAGCCCAGAAATCTCTCGCAGACAAATTTTGCAGCAATATCAGAAATACGCAGATTCAGTTATTGGAAAATATGGAACCAATAAGCCTAGTATTAGGAACGTAGCGAAGCCTTTACTGCATTTATTTCACTCAGAACCTGGCGCTGGTGTTTGGAAACGTAGAATGGATGCAGCATTTCGCCATTGTACGAGTGTTCAGTCACTGCTTGAGGAGACACTTGAAGTAATTCCAGATTATGTTTTGGATGCTTCTCCTCCTGGCCCAATTTCAGATGATGAACCTTTCGCTGGAATAGAGATGTTGCTGCCTCAGCTTCAGGCGATCTCATCATGCGGAGCAGTTGTTGAGGACTCTTGCAGAAAAGTGACACAGAATATTTAATATAGTTATCGACATCTCTTATCACGTAGAGCAGTTGTTGAGGATGACCAGTCTTGCAGAGAAGTGATACAGAACATCTAATATAGTTATTGGCATCTCTTTGACAACCAATGTACTCATTACCAGATCTTTGTTTTGTTGAAGTGGATCAGTTAAGAATTCTGCAACCTAGCGTCTGCCTAGAACTCATCCTAATATAATATCACAATGTCACTTCTAATACGACTCGTTGAGATGGTTCAAAAGTTGAGAAAAGTTTAAATTGAAAAATTTCAGTAATGTACATGGATGAGAGGATTTTAACTTTCAAAGTTTTATCTGCATGTCTTTGTACGCCTAGATATCCGTCAGTGTGGACTTACCCTTGTGTTTTGTATTCAATTAAATGACGCGGTAGCCAACCTATGGTGTTGGAGAATTCATACATCCAATTATTGCAATCAGCAGAGGGAAAGAGACTTCAGCCCGTATTGGGAGTATATTGTGCGATAATCTGAGTTGAGGCAACTTATAGAGTTATCTAACAAGAGGATCCATAATTATCTGACGAGGCTTATTTTTTAATATCCTATGGCAATCATTTTAATAAACTTGGTCTGGATTTCTGACTTCCATGGAGTTAAAATCAGTCTATGGTGTCTGAATTCTGAAGCCGACAAAGCTTATATCAGCAAGGATTTTGGTTTCAAGATGGAATACTTTGTTGTGATGTGGGAGGCTAAAGTGGAATCTAAGGACAGGATTTGATTGCGTTTATAGTTCAATGGCGCCAATTGTGTTATTTGTGAATCCGATCAAATTGAATTCAAATTTTAACAGTGTGTAACATAACATGAGCCGGAAAAGCTTAGTGACAAGTCTGCATGGCATTATACTGATTTGAATATAATCTCAGAGGCTCTCAATGGTATACACACCTTATATATA

Ace file of the UniGene sp_v3.0_unigene1867

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	FMN-linked oxidoreductase-like protein protein n=5 Tax=Arabidopsis RepID=Q8H128_ARATH	-	-	0.0	68%
FL-Next	tr=Putative uncharacterized protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	68%

Source	Gene names
Sma3	AT3G63510; At3g63510; At5g47970; GSVIVT00028772001; MA4_111B14.10; MAA21_140; MICPUCDRAFT_3699; MICPUCDRAFT_4894; MICPUN_59818; MICPUN_84205; OSIGBa0113C11.1; OSJNBa0009K15.27; OSJNBa0079F16.3; OSJNBa0079F16.4; OSTLU_4136; Os04g0278900; OsI_15183; OsJ_141

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	phragmoplast	GO:0009524	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	tRNA dihydrouridine synthase activity	GO:0017150	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	tRNA processing	GO:0008033	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Blue (type 1) copper domain	IPR000923	-	-
Sma3	tRNA-dihydrouridine synthase	IPR001269	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	tRNA-dihydrouridine synthase, conserved site	IPR018517	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G63510.1	FMN-linked oxidoreductases superfamily protein chr3:23450542-23452682 FORWARD LENGTH=419	68%
RefSeq	Arabidopsis thaliana	NP_567149.2	FMN-linked oxidoreductase-like protein protein [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002298425.1	predicted protein [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: Q8LFT6

Fln msg: your sequence is longer than subject: 471 - 404

Fln protein: MIRFLSVFRRCEGMMSIVCYRLPVSVSSTCHCRTPSRIYGGGKSYCFVPHRFASSTPVLGCYFFPTKFISATTAWLSRLCKFKVCASGSKQYLPPLFSVAPMMDWTDNHYRTLARLISHHAWLYTEMVVAETIVHQQHNLDKFLEIPEMQHPVVLQIGGSNLSNLAKAAELANAYGYDEINLNCGCPSERVAGHGCFGAQLMLNPKLVGEAMASISANSDVPVSVKCRIGVDDHDTYDKLCTFIDTVASLSPTRHFIVHARKALLKGLSPAENRTIPPLKYEYVFSLIRDFPHLDFTINGGITTLHQVNSALQKGVYGVMMGRSAYNTPWATLGHVDTAVYGVPSPEISRRQILQQYQKYADSVIGKYGTNKPSIRNVAKPLLHLFHSEPGAGVWKRRMDAAFRHCTSVQSLLEETLEVIPDYVLDASPPGPISDDEPFAGIEMLLPQLQAISSCGAVVEDSCRKVTQNI*

Protein Length: 472

Fln nts: GGTAGCAAATGTTTTTAAAAACTGACAATGCCATGCACTAAATGTTACCATTCTTATAGACATCCTTCGTGGGCACACTGTTGCATTTGCCAGAAATTCGTGACTATTTCCATTGCCGCTTTTCATCAGTTTGAGGTGTGAACAAGGTTCCTGGGATTGCTGTTCTGTGTTGAGCTGGTTCATGGAAACACACTAATTTATCCTAGAGTTCACTGCCATTGGCTAGAAATGAGTTTTAATAGTTATTGTTTTTTGTAACATTGGTGAATACTTCCTGTTTCCATTTTTTCATCTGAATGTCTGCTTCGG_-_ATGATTAGGTTTCTTTCAGTATTCCGAAGGTGTGAAGGCATGATGAGTATTGTTTGTTATCGTCTGCCTGTCTCGGTTTCTTCAACCTGTCATTGTCGTACTCCATCCCGGATATATGGTGGTGGGAAGTCATATTGCTTTGTTCCTCACAGATTTGCAAGTTCTACTCCAGTGTTAGGTTGTTACTTTTTTCCCACCAAATTCATCTCTGCTACTACAGCATGGTTGTCACGGCTATGCAAATTTAAAGTTTGTGCAAGTGGAAGCAAGCAATATCTTCCTCCTCTGTTCAGTGTAGCACCAATGATGGACTGGACTGATAATCATTATAGGACCCTGGCACGTCTCATCTCTCATCATGCCTGGCTTTATACTGAAATGGTTGTGGCAGAGACTATTGTTCACCAACAGCACAATTTGGATAAATTTTTGGAAATCCCTGAAATGCAACATCCTGTAGTTCTTCAAATTGGTGGGAGTAACTTGTCAAACCTCGCAAAAGCGGCTGAACTTGCAAATGCCTATGGTTATGATGAAATCAATCTCAATTGTGGTTGCCCCAGTGAAAGAGTAGCTGGTCATGGATGCTTTGGCGCCCAACTTATGTTGAACCCTAAGCTTGTAGGAGAGGCAATGGCATCAATTTCTGCAAATTCTGATGTTCCTGTCAGTGTGAAATGTCGGATTGGAGTTGATGACCATGATACATATGATAAGCTTTGTACATTCATTGATACTGTTGCATCTTTGTCACCAACTAGACATTTCATTGTGCATGCTCGGAAAGCTCTGTTGAAAGGCCTTAGTCCAGCTGAGAATCGGACCATTCCTCCTCTGAAGTATGAATATGTCTTCAGCCTGATTCGTGATTTTCCTCATTTGGACTTCACCATAAATGGGGGCATTACCACTCTGCATCAGGTTAATTCGGCATTGCAAAAGGGAGTGTATGGAGTGATGATGGGACGTTCTGCATATAATACTCCATGGGCTACTCTAGGGCATGTTGATACTGCAGTTTATGGTGTGCCAAGCCCAGAAATCTCTCGCAGACAAATTTTGCAGCAATATCAGAAATACGCAGATTCAGTTATTGGAAAATATGGAACCAATAAGCCTAGTATTAGGAACGTAGCGAAGCCTTTACTGCATTTATTTCACTCAGAACCTGGCGCTGGTGTTTGGAAACGTAGAATGGATGCAGCATTTCGCCATTGTACGAGTGTTCAGTCACTGCTTGAGGAGACACTTGAAGTAATTCCAGATTATGTTTTGGATGCTTCTCCTCCTGGCCCAATTTCAGATGATGAACCTTTCGCTGGAATAGAGATGTTGCTGCCTCAGCTTCAGGCGATCTCATCATGCGGAGCAGTTGTTGAGGACTCTTGCAGAAAAGTGACACAGAATATTTAA___TATAGTTATCGACATCTCTTATCACGTAGAGCAGTTGTTGAGGATGACCAGTCTTGCAGAGAAGTGATACAGAACATCTAATATAGTTATTGGCATCTCTTTGACAACCAATGTACTCATTACCAGATCTTTGTTTTGTTGAAGTGGATCAGTTAAGAATTCTGCAACCTAGCGTCTGCCTAGAACTCATCCTAATATAATATCACAATGTCACTTCTAATACGACTCGTTGAGATGGTTCAAAAGTTGAGAAAAGTTTAAATTGAAAAATTTCAGTAATGTACATGGATGAGAGGATTTTAACTTTCAAAGTTTTATCTGCATGTCTTTGTACGCCTAGATATCCGTCAGTGTGGACTTACCCTTGTGTTTTGTATTCAATTAAATGACGCGGTAGCCAACCTATGGTGTTGGAGAATTCATACATCCAATTATTGCAATCAGCAGAGGGAAAGAGACTTCAGCCCGTATTGGGAGTATATTGTGCGATAATCTGAGTTGAGGCAACTTATAGAGTTATCTAACAAGAGGATCCATAATTATCTGACGAGGCTTATTTTTTAATATCCTATGGCAATCATTTTAATAAACTTGGTCTGGATTTCTGACTTCCATGGAGTTAAAATCAGTCTATGGTGTCTGAATTCTGAAGCCGACAAAGCTTATATCAGCAAGGATTTTGGTTTCAAGATGGAATACTTTGTTGTGATGTGGGAGGCTAAAGTGGAATCTAAGGACAGGATTTGATTGCGTTTATAGTTCAATGGCGCCAATTGTGTTATTTGTGAATCCGATCAAATTGAATTCAAATTTTAACAGTGTGTAACATAACATGAGCCGGAAAAGCTTAGTGACAAGTCTGCATGGCATTATACTGATTTGAATATAATCTCAGAGGCTCTCAATGGTATACACACCTTATATATA

Fln Alignment:

Contig1867___ASGSKQYLPPLFSVAPMMDWTDNHYRTLARLISHHAWLYTEMVVAETIVHQQHNLDKFLEIPEMQHPVVLQIGGSNLSNLAKAAELANAYGYDEINLNCGCPSERVAGHGCFGAQLMLNPKLVGEAMASISANSDVPVSVKCRIGVDDHDTYDKLCTFIDTVASLSPTRHFIVHARKALLKGLSPAENRTIPPLKYEYVFSLIRDFPHLDFTINGGITTLHQVNSALQKGVYGVMMGRSAYNTPWATLGHVDTAVYGVPSPEISRRQILQQYQKYADSVIGKYGTNKPSIRNVAKPLLHLFHSEPGAGVWKRRMDAAFRHCTSVQSLLEETLEVIPDYVLDASPPG-PISDDEP-FAGIEMLLP
Q8LFT6______________SSTSSPYLPPSFSVAPMMDWTDNHYRTLARLITKHAWLYTEMIAAETLVHQQTNLDRFLAFSPQQHPIVLQLGGSNVENLAKAAKLSDAYGYDEINLNCGCPSPKVAGHGCFGVSLMLKPKLVGEAMSAIAANTNVPVTVKCRIGVDNHDSYDELCDFIYKVSTLSPTRHFIVHSRKALLGGISPADNRRIPPLKYEYYYALVRDFPDLRFTINGGITSVSKVNAALKEGAHGVMVGRAAYNNPWQTLGHVDTAVYGVPSSGLTRRQVLEQYQVYGDSVLGTHGNGRPNVRDLVKPLLNLFHSENANSLWKRRADAAFKECRSVGSLLEESLRAIPDCVLDSPISGSPESGDEDVFADVHNVLP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain