SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1822

Length: 3048 nt

UniGene Fasta

>sp_v3.0_unigene1822
GGAACCCCTGTAGCCGAGCCGTGTTATATAAATACAGATACCCTGATATTTGTGTTCATTTCCATTAACCGTTAAATTTATTGAACGGGCGGAAGCTGAAAGATCTGGAAGCGAATACATCGCTGCTGTTTAAAGATCGGCCATTGGAGGACGAAATACGACATAATTCCAATAAATTTGCGAATCGCAGAGCTGGATTTCTTTCCGAGTTCGAGTGAAATTTGCGTACTGATCGGAGATTTGAAGGTTTGCAGCGGGGCCGTTGAATTGATAAATTTTCTGTTTTGATTTGTAAAGCTAAGGGTTGGGTTTGGGGTTTGTTTATTTAAGATCTGGGGTTTGGATCTTTGAGGTGTATATTTGTGGCCGGCTGTCTTGAATTCGATGGCCATGATGCCAGCGAGGAAGAAGCGGCTTTCGATTGGGACTTTTCATACCCCTGTAACGCTTTCGCCGATGTCTCTGGTGAACGCGCTCCTGGTTCTTGCGCAGGAAATCGGGCGGTGTTCGAAACCCCAGGCATGCCAGAGGAAAAATACTGCAGGCATCACTAGACGGATAAAGGTTTTGTCCATTCTGTTTGAAGTGGTGAAGGACTCCACAGTGCCGTTGCCTCCGTCGGCCGTGTTGTGTTTCAATGAGATGTATATTATGTTACAGAGGACCAAGATGTTTCTTGAGGATTGTAGCGAGAGCAGCCGTGTTTGGTTATTGATGCAGGGGGAAAGTATCGCGTACAAGTTCCATGAACTGAATCAGGAGATGGCGACGGCCTTGGATGTTCTGCCTTTGAAGCTGTTGGATGTCGTGGAGGACGTAAGGGAGCAGGTTGAATTGGTGCAGAGGCAGGTGAGGCGGGCGAAATTTACTGTCGATCAGTATGAGCAGAGGCTTCGGAAAGACGTCCTTGCGGTCTTGGACGAATTCGAGAGAAAAGTTACGCCGGATTCTGCAAAATTAGTCACAATTTTCAATTTCTTGGGGTTGAACGATGCGAGGGACTGCCGGAACGAGATTCAATGGTTGGAAGAGGAGATTCGCGAGCAGAGCAACGCTGGCGGTCCTGAGGCGACGGTTTCTTTGATCAACAGCTTGATCAGCTTGATTCGATACTGCAAATGCGTCTTATTTGGAGTGTCAGAGATAGAACATGTGGAGAAAATTTCTAATGTCAAGTCTCCAGCGGCTGAAATTAATGGCGAGGAGGTTTATGCGATTCCGGACGATTTCCGCTGCCCGATTTCCCTAGATTTGATGCGGGACCCCGTCATCGTCTCGACGGGGCAAACATATGATCGGCTTTCCATCAATCGCTGGATCGAGGACGGCCATTCCACCTGCCCGAAGAGCGGCCAGGTTTTGCTGCACAAGGACCTCGTTCCTAATTACGCTCTGCGCAACCTTATCCATCAATGGTGCGAAGAGCGCGGCGTCCCGTTTGAGAAGCCGGAAAAAGGGAGCAGAAACATTTCGCTGGAGAGCGTCGCCAGCACCAAAGCGGCACTCGAGGCGACTAAAATGACGGCTGCCTTTCTGGTAGGGAAGCTCTCCACTGGCACGCCGGAAGTCCAGAAACAAGTCGCATATGAGCTCCGTTTGCTTGCAAAGTGCGGGATGGATAACCGTGCCTGTATCGCCGAAGCCGGCGCTATATCGCAGCTGGTGCCGCTGCTCTCATCTGAAGACCCTAAGACGCAGGAAAACGCGGTTACGGCTCTGTTGAATCTTTCCATCTACGAGAACAACAAAGCTGTGATCGTCGAAGCGGCCGATTCTCTGGACTCGATAATCCAAGTCCTGAAGTCCGGCCGTAGCGTTGAAGCGAAGGAGAATGCGGCCGCTACGCTCTTCAGCCTCTCTGCTGTGAACGACTACAAGAAACTCATTGGAGAGATGCCGGACGCCATTCCGTCGCTGGTCGAGCTTCTCCGCGATGGAACCCCCCGCGGCAAACGGGACGCCGTGTCTGCCCTGTTCAATCTCTCCATTAACCGCAGCAACGCGGCCAGGGTTGTGGAAGTGGGCGCGGTGCCTCTGCTGGTGAACCTTCTGACGGAAGAGGACCGCGAACGACCAGGCCTGGCCGACGATGCTCTGGCTGTGCTTGCCGTTCTGTCCGGTCAGCGCCCGGGTCTGGCCGCGGTTAGCCAGACGTCGGCGATTCCCATTCTGGTTGGCCTTCTCCGCTCGGCTTCTCCAAAGGGTAAAGAAAACGCCGTGGCGGTTCTGTTGTCGCTGTGCCGTCACGGAGGCGGCAATGTTCTGAACGCCGTGACTATGGTTCCATCGTTGGTGCCTTCCTTGTACATTCTTCTCACGACAGGCACTCACCGCGCTAAGCGAAAAGCCACCTCATTACTGAAGATTCTACAGAGATGGGAGCCTCCTTCTAGAACAGTTACCTCCGTTGCCGCCCATTCCATAATTTCTTCTTCAACCGCAATGGCAGTCGTCGCTCCATTACGGTAATTCGCCTGTTTAATTTTTATCGAAATGAAAAAAAAAATCAAGAAAATTTCCCTGGATCTGGGTCTTCTTGGTGAAAACCATTGCAGAGGGCTATTTAATTTTTGGGGAATTTTTGGTTTCTTGAATTGGATTAATGACTGCAAGTGCAAGTGGTTATTTATACAGTTGGATGTTTGGTTTCATTCTTTTTAAGTCTATTTATTAAGATGAAAGAAGAAAGCTTTATGTTGCCGTCTTGCAAACGAAAGACTGCATCTCATCAATAAAATCACTGTTGTATTTATATTTCTGTCCATAGACAGATGACTATTTCTACGGCTCCATCCGTAAATGTTCTGCTAGTAATCTTCTGTCTTTTCCAGCTCTGGATTCTGTGTTTTGTTTTCAATAAAAGTATTTGTAACATGTTTTGCAATTCATAGAAACTAGACGGTGGATTGTTAGCTCTGCATTTCCCTGCGAGTATCAATGGCCGAGTCTTCTCTTTTGATTCAAAACCGAAATCGAAACTGCTATAGTTGCCCAATTTGGGAATTCAGTAATAAGATTCATTGTGGAGAAAATCTCTGAGAACCATAG

Ace file of the UniGene sp_v3.0_unigene1822

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	U-box multi-domain protein	-	-	3.0e-17	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%
Sma3	Ubiquitin-protein ligase, putative	-	-	1.27e-10	-

Source	Gene names
Sma3	ACRE276; At1g29340; At1g71020; At2g23140; At3g54790; At4g16490/dl4270c; B1065E10.53; F15D2.34; GSVIVT00016120001; GSVIVT00018150001; GSVIVT00018791001; GSVIVT00019617001; GSVIVT00028576001; GSVIVT00028839001; GSVIVT00029333001; GSVIVT00035825001; GSVIVT00

Source	GOs	Term	Type	Identity
Sma3	ubiquitin ligase complex	GO:0000151	Cellular Component	-
Sma3	proton-transporting two-sector ATPase complex, catalytic domain	GO:0033178	Cellular Component	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	GO:0016820	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	defense response to fungus, incompatible interaction	GO:0009817	Biological Process	-
Sma3	ATP synthesis coupled proton transport	GO:0015986	Biological Process	-
Sma3	protein ubiquitination	GO:0016567	Biological Process	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Armadillo	IPR000225	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	ThiJ/PfpI	IPR002818	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G29340.1	PUB17, ATPUB17 plant U-box 17 chr1:10264412-10266601 FORWARD LENGTH=729	46%
RefSeq	Arabidopsis thaliana	NP_174228.1	U-box domain-containing protein 17 [Arabidopsis thaliana]	46%
RefSeq	Populus trichocarpa	XP_002311243.1	predicted protein [Populus trichocarpa]	47%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSB5

Fln msg: your sequence is longer than subject: 695 - 497

Fln protein: MAMMPARKKRLSIGTFHTPVTLSPMSLVNALLVLAQEIGRCSKPQACQRKNTAGITRRIKVLSILFEVVKDSTVPLPPSAVLCFNEMYIMLQRTKMFLEDCSESSRVWLLMQGESIAYKFHELNQEMATALDVLPLKLLDVVEDVREQVELVQRQVRRAKFTVDQYEQRLRKDVLAVLDEFERKVTPDSAKLVTIFNFLGLNDARDCRNEIQWLEEEIREQSNAGGPEATVSLINSLISLIRYCKCVLFGVSEIEHVEKISNVKSPAAEINGEEVYAIPDDFRCPISLDLMRDPVIVSTGQTYDRLSINRWIEDGHSTCPKSGQVLLHKDLVPNYALRNLIHQWCEERGVPFEKPEKGSRNISLESVASTKAALEATKMTAAFLVGKLSTGTPEVQKQVAYELRLLAKCGMDNRACIAEAGAISQLVPLLSSEDPKTQENAVTALLNLSIYENNKAVIVEAADSLDSIIQVLKSGRSVEAKENAAATLFSLSAVNDYKKLIGEMPDAIPSLVELLRDGTPRGKRDAVSALFNLSINRSNAARVVEVGAVPLLVNLLTEEDRERPGLADDALAVLAVLSGQRPGLAAVSQTSAIPILVGLLRSASPKGKENAVAVLLSLCRHGGGNVLNAVTMVPSLVPSLYILLTTGTHRAKRKATSLLKILQRWEPPSRTVTSVAAHSIISSSTAMAVVAPLR*

Protein Length: 696

Fln nts: GGAACCCCTGTAGCCGAGCCGTGTTATATAAATACAGATACCCTGATATTTGTGTTCATTTCCATTAACCGTTAAATTTATTGAACGGGCGGAAGCTGAAAGATCTGGAAGCGAATACATCGCTGCTGTTTAAAGATCGGCCATTGGAGGACGAAATACGACATAATTCCAATAAATTTGCGAATCGCAGAGCTGGATTTCTTTCCGAGTTCGAGTGAAATTTGCGTACTGATCGGAGATTTGAAGGTTTGCAGCGGGGCCGTTGAATTGATAAATTTTCTGTTTTGATTTGTAAAGCTAAGGGTTGGGTTTGGGGTTTGTTTATTTAAGATCTGGGGTTTGGATCTTTGAGGTGTATATTTGTGGCCGGCTGTCTTGAATTCG_-_ATGGCCATGATGCCAGCGAGGAAGAAGCGGCTTTCGATTGGGACTTTTCATACCCCTGTAACGCTTTCGCCGATGTCTCTGGTGAACGCGCTCCTGGTTCTTGCGCAGGAAATCGGGCGGTGTTCGAAACCCCAGGCATGCCAGAGGAAAAATACTGCAGGCATCACTAGACGGATAAAGGTTTTGTCCATTCTGTTTGAAGTGGTGAAGGACTCCACAGTGCCGTTGCCTCCGTCGGCCGTGTTGTGTTTCAATGAGATGTATATTATGTTACAGAGGACCAAGATGTTTCTTGAGGATTGTAGCGAGAGCAGCCGTGTTTGGTTATTGATGCAGGGGGAAAGTATCGCGTACAAGTTCCATGAACTGAATCAGGAGATGGCGACGGCCTTGGATGTTCTGCCTTTGAAGCTGTTGGATGTCGTGGAGGACGTAAGGGAGCAGGTTGAATTGGTGCAGAGGCAGGTGAGGCGGGCGAAATTTACTGTCGATCAGTATGAGCAGAGGCTTCGGAAAGACGTCCTTGCGGTCTTGGACGAATTCGAGAGAAAAGTTACGCCGGATTCTGCAAAATTAGTCACAATTTTCAATTTCTTGGGGTTGAACGATGCGAGGGACTGCCGGAACGAGATTCAATGGTTGGAAGAGGAGATTCGCGAGCAGAGCAACGCTGGCGGTCCTGAGGCGACGGTTTCTTTGATCAACAGCTTGATCAGCTTGATTCGATACTGCAAATGCGTCTTATTTGGAGTGTCAGAGATAGAACATGTGGAGAAAATTTCTAATGTCAAGTCTCCAGCGGCTGAAATTAATGGCGAGGAGGTTTATGCGATTCCGGACGATTTCCGCTGCCCGATTTCCCTAGATTTGATGCGGGACCCCGTCATCGTCTCGACGGGGCAAACATATGATCGGCTTTCCATCAATCGCTGGATCGAGGACGGCCATTCCACCTGCCCGAAGAGCGGCCAGGTTTTGCTGCACAAGGACCTCGTTCCTAATTACGCTCTGCGCAACCTTATCCATCAATGGTGCGAAGAGCGCGGCGTCCCGTTTGAGAAGCCGGAAAAAGGGAGCAGAAACATTTCGCTGGAGAGCGTCGCCAGCACCAAAGCGGCACTCGAGGCGACTAAAATGACGGCTGCCTTTCTGGTAGGGAAGCTCTCCACTGGCACGCCGGAAGTCCAGAAACAAGTCGCATATGAGCTCCGTTTGCTTGCAAAGTGCGGGATGGATAACCGTGCCTGTATCGCCGAAGCCGGCGCTATATCGCAGCTGGTGCCGCTGCTCTCATCTGAAGACCCTAAGACGCAGGAAAACGCGGTTACGGCTCTGTTGAATCTTTCCATCTACGAGAACAACAAAGCTGTGATCGTCGAAGCGGCCGATTCTCTGGACTCGATAATCCAAGTCCTGAAGTCCGGCCGTAGCGTTGAAGCGAAGGAGAATGCGGCCGCTACGCTCTTCAGCCTCTCTGCTGTGAACGACTACAAGAAACTCATTGGAGAGATGCCGGACGCCATTCCGTCGCTGGTCGAGCTTCTCCGCGATGGAACCCCCCGCGGCAAACGGGACGCCGTGTCTGCCCTGTTCAATCTCTCCATTAACCGCAGCAACGCGGCCAGGGTTGTGGAAGTGGGCGCGGTGCCTCTGCTGGTGAACCTTCTGACGGAAGAGGACCGCGAACGACCAGGCCTGGCCGACGATGCTCTGGCTGTGCTTGCCGTTCTGTCCGGTCAGCGCCCGGGTCTGGCCGCGGTTAGCCAGACGTCGGCGATTCCCATTCTGGTTGGCCTTCTCCGCTCGGCTTCTCCAAAGGGTAAAGAAAACGCCGTGGCGGTTCTGTTGTCGCTGTGCCGTCACGGAGGCGGCAATGTTCTGAACGCCGTGACTATGGTTCCATCGTTGGTGCCTTCCTTGTACATTCTTCTCACGACAGGCACTCACCGCGCTAAGCGAAAAGCCACCTCATTACTGAAGATTCTACAGAGATGGGAGCCTCCTTCTAGAACAGTTACCTCCGTTGCCGCCCATTCCATAATTTCTTCTTCAACCGCAATGGCAGTCGTCGCTCCATTACGGTAA___TTCGCCTGTTTAATTTTTATCGAAATGAAAAAAAAAATCAAGAAAATTTCCCTGGATCTGGGTCTTCTTGGTGAAAACCATTGCAGAGGGCTATTTAATTTTTGGGGAATTTTTGGTTTCTTGAATTGGATTAATGACTGCAAGTGCAAGTGGTTATTTATACAGTTGGATGTTTGGTTTCATTCTTTTTAAGTCTATTTATTAAGATGAAAGAAGAAAGCTTTATGTTGCCGTCTTGCAAACGAAAGACTGCATCTCATCAATAAAATCACTGTTGTATTTATATTTCTGTCCATAGACAGATGACTATTTCTACGGCTCCATCCGTAAATGTTCTGCTAGTAATCTTCTGTCTTTTCCAGCTCTGGATTCTGTGTTTTGTTTTCAATAAAAGTATTTGTAACATGTTTTGCAATTCATAGAAACTAGACGGTGGATTGTTAGCTCTGCATTTCCCTGCGAGTATCAATGGCCGAGTCTTCTCTTTTGATTCAAAACCGAAATCGAAACTGCTATAGTTGCCCAATTTGGGAATTCAGTAATAAGATTCATTGTGGAGAAAATCTCTGAGAACCATAG

Fln Alignment:

Contig1822___RAKFTVDQYEQRLRKDVLAVLDEFERKVTPDSAKLVTIFNFLGLNDARDCRNEIQWLEEEIREQSNAGGPEATVSLINSLISLIRYCKCVLFGVSEIEHV--EKISNVKSPAAEINGEEVYA--IPDDFRCPISLDLMRDPVIVSTGQTYDRLSINRWIEDGHSTCPKSGQVLLHKDLVPNYALRNLIHQWCEERGVPFEKPEKGSRNISLESVASTKAALEATKMTAAFLVGKLSTGTPEVQKQVAYELRLLAKCGMDNRACIAEAGAISQLVPLLSSEDPKTQENAVTALLNLSIYENNKAVIVEAADSLDSIIQVLKSGRSVEAKENAAATLFSLSAVNDYKKLIGEMPDAIPSLVELLRDGTPRGKRDAVSALFNLSINRSNAARVVEVGAVPLLVNLLTEEDRERPGXXXXXXXXXXXXSGQRPGLAAVSQTSAIPILVGLLRSASPKGKENAVAVLLSLCRHGGGNVLNAVTMVPSLVPSLYILLTTGTHRAKRKATSLLKILQRWE
C0PSB5______________RSKGRADTQDIELFMDIMIALSQKDGR-NADSAVLERLADKLQLGTVSDLTVESRAVEKLMKERGGEMGETA-----EHILYLLKKMK----GMQEIGNLGGDKIGFESLALSEVSLEKISSPIFPEDFRCPISLELMQDPVIVATGQTYDRLCIQRWLDLGHKTCPKTQQVLPHMTLTPNYVLRSLIAQWCESHGVEIPSKAGSSRSDSSDVSFGNRTSID-------ILVQQLYSRQIDVQRAAAEEIRLLAKRNADNRLLIAEAGAIPQLVKLLSSTDMKTQEHAVTALLNLSIHSSNKGFIVQAG-AINRIIDVLKHG-STEARENAAATLFSLSVVDENKVIIG-ASGAIPPLVDLLRDGTVRGKKDAATAIFNLSIYQGNKFRAVRAGVVPPLIALLVDQS---IGMVDEALAILAILATHQEGRIAIGQQSAIDILVELIHSGSARNKENAAAVLLALGMNDSSHLLAAMQL--GVFEYLIELAQNGTARARRKARGLLDLISKQE

SNPs (tot: 50)

Position	A %	C %	G %	T %	Probability
1907		77		22	0.999999
1914			22	77	0.999999
1958			83	16	0.994512
1959		16	83		0.994512
1960	83		16		0.994512
1961		83		16	0.994512
1965			83	16	0.994512
1968			16	83	0.994512
1972		83		16	0.994512
1992	85	14			0.993533
1993	85		14		0.993533
1994		85		14	0.993533
1997		85		14	0.993533
1999		14	85		0.993533
2001	85			14	0.993533
2002	85			14	0.993533
2003		85	14		0.993533
2006			85	14	0.993533
2008		85		14	0.993533
2011		14	85		0.993533
2012			85	14	0.993533
2013		14	85		0.993533
2014	14			85	0.993533
2051	14			85	0.993533
2054			85	14	0.993533
2150		88		11	0.923564
2340	90		9		0.999842
2342		9	90		0.999842
2344			90	9	0.999842
2345	90			9	0.999872
2346	90		9		0.999872
2347	90		9		0.999872
2348	85	9			0.999726
2350		90		9	0.999872
2515	71	14	14		0.984337
2517	71	28			1.0
2518		14		85	0.993533
2519		14		85	0.993533
2521		85	14		0.993533
2522		85	14		0.993533
2526			85	14	0.993533
2527	85	14			0.993533
2528	14			85	0.993533
2531		14	85		0.993533
2532	14		85		0.993533
2561	14		85		0.993533
3027	16		83		0.994512
3029	80		20		0.995493
3041	50			50	1.0
3046	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain