SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1810

Length: 1955 nt

UniGene Fasta

>sp_v3.0_unigene1810
TGGACCGCTATAAAATTGAAGAAGCCTCAAGGTCAGATTTGGTAAAAGTCAAGGTCAAGGGTAGAAGTTCCGTTCATGAGGAATCGGGTTTGCAGGAAACAGGTCACATCCTTGAGGAAGGGAAAAATATTTACAATACAACTCTGAATATGTCTGACCTATCCACTGGCATCAACAGTTATTATATTCTTCAAGTTATTGAGGATGACAAAAAGACAGGCTGTCATGTTTTCCGCAAGTGGGGCCGAGTTGGTAACAGTAAAATTGGAGGCCAGAAGTTGGAGAAGATGCCAAAATTGGCTGCAATCCATGAATTCAAAAGATTGTTTCTTGAAAAGACAGGAAATGAATGGGAAAGCTGGGTAAACAAAGACGATTTTGAGAAGCAGCCTGGCAAGTTTTTTCCTCTGGAAATTGATTACGGAGTTGATGAATCACGACAAAAAGACATCGGGACCTTGGCTGCAAAGAGCAAACTTGATCCTCGGGTGATAGACCTAATGAAGATGCTTTTTGATCTTGAAACATATAGGGCTGCCATGATGGAGTTTGAGATTAACATGTCAGAAATGCCACTTGGGAAGCTGAGTAAAAGTAACATCCAAAGAGGGTTTGAGGTGTTGACAGAAGTGCAGAACTTGATTGAACTGAATGACTCTGATGTTAGTCGTAAAGAGAGCTTGATTGTTGATGCTAGCAATCGGTTTTTTACACTTATTCCATCAGTGCATCCCCATATTATTAGAGATGAAGATGACCTTAAATCAAAGATTCAAATGTTGGAGACTCTTCGAGACATTGAAATAGCTTCTAGTCTTATTAACTTCGAAAATAATGATGAGGATCCTTTTGATACCAATTATAAGAAACTTCACTGCAATATAACTCCCTTACCTCATGACAGCCCTGATTACCAACTTATTAAAAGATACCTCGAAACTACCCACGCTCCAACACACAAGGAGTGGGCCCTTGAACTGGAGGACGCTTATGCAATTGATAGGGAAGGAGAATATGATGCATATTTGCCTCATAAAAGCAGTCTTAAAAACCGCATGCTGCTTTGGCATGGTTCACGTGTGACAAACTTTGTTGGTATCCTGAGTCAAGGACTTCGAATAGCTCCCCCAGAGGCTCCAGCGACTGGATATATGTTTGGTAAGGGTCTTTACTTTGCAGACCTAGTGAGCAAGAGTGCACAGTATTGTTACACACATAAGAATAATCCCATGGGATTGATGCTGCTCAGTGAGGTAGCGTTGGGTGAAGTTCATCAGCTAAAAAGTGCAAAGTATATGGAGAAGCCTCCCAAAGGAAAGCATTCAACAATGGGCGTGGGTAAGACAAAGCCATTGGATACAGAATACGAACGCTGGGGGGATGATGTGACTGTACCTTGTGGTCGCCCTGTACCTTCAGGTGCTAAAAACAGTGATTTGCTGTACAATGAGTATATCGTATATAATCCTGCTCAGGTGAAGCTGCAGTTTTTGTTAAAGGTGCGCTTCCAATACAAGCGATAAGAACGTTAGTGAGACTACCAGATCCGGCTGGAGTTTTTGGTTTCAATCTACGAGTAATTAGTGTATTGTCAACTGTAAAGCTCGGGTGTCATGAAAAAGCCTCTGATCTTCATCTTGTCGTAATTACTTGGATGGTTTGCATGTTCAGATATATCTTTACTAGAGTAGAAGAGTACTTGTATATATTTATTATATGGACTTCACCATTGTTGCAGCGATTTTATGGAGGATGACGTGCATGTGTTGAAACCGATTTATACATACACACAGAAATGTGTAAAGTTCTTGAAGGTTTTCCTTAAGAACCTTTTGGTGCCATTCTGGCATTTACCCTGCTCTAAGCCTAATATCGAGTTTTTCTATATATAACTTAATTTATCTCGTGGAAAAAAAAAAAAAAAAAAAAAAAAAGAACCCTGGGTTAATACCACT

Ace file of the UniGene sp_v3.0_unigene1810

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative poly (ADP-ribose) polymerase [Arabidopsis thaliana]	-	-	0.0	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Sma3	Poly[ADP-ribose] synthetase 1	-	-	7.814e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:2.4.2.3-	-	1.718e-10	-

Source	Gene names
Sma3	At2g31320; F16D14.16; GSVIVT00007500001; LOC_Os07g23110; OSJNBa0077F02.113; Os07g0413700; OsI_25738; OsJ_23951; PARP1; PHYPADRAFT_150949; PHYPADRAFT_188096; POPTRDRAFT_830081; RCOM_0993250; VITISV_037618;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	NAD+ ADP-ribosyltransferase activity	GO:0003950	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	NAD binding	GO:0051287	Molecular Function	-
Sma3	DNA repair	GO:0006281	Biological Process	-
Sma3	protein ADP-ribosylation	GO:0006471	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	response to abiotic stimulus	GO:0009628	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	BRCT domain	IPR001357	-	-
Sma3	Zinc finger, PARP-type	IPR001510	-	-
Sma3	DNA-binding SAP	IPR003034	-	-
Sma3	Poly(ADP-ribose) polymerase, regulatory domain	IPR004102	-	-
Sma3	NAD+ ADP-ribosyltransferase	IPR008288	-	-
Sma3	WGR domain	IPR008893	-	-
Sma3	Poly(ADP-ribose) polymerase, catalytic domain	IPR012317	-	-
Sma3	PADR1	IPR012982	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G31320.1	PARP2, ATPARP2 poly(ADP-ribose) polymerase 2 chr2:13354046-13359578 REVERSE LENGTH=983	0.0	70%
RefSeq	Populus trichocarpa	XP_002302058.1	predicted protein [Populus trichocarpa]	0.0	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAL4

Fln msg:

Fln protein: MSDLSTGINSYYILQVIEDDKKTGCHVFRKWGRVGNSKIGGQKLEKMPKLAAIHEFKRLFLEKTGNEWESWVNKDDFEKQPGKFFPLEIDYGVDESRQKDIGTLAAKSKLDPRVIDLMKMLFDLETYRAAMMEFEINMSEMPLGKLSKSNIQRGFEVLTEVQNLIELNDSDVSRKESLIVDASNRFFTLIPSVHPHIIRDEDDLKSKIQMLETLRDIEIASSLINFENNDEDPFDTNYKKLHCNITPLPHDSPDYQLIKRYLETTHAPTHKEWALELEDAYAIDREGEYDAYLPHKSSLKNRMLLWHGSRVTNFVGILSQGLRIAPPEAPATGYMFGKGLYFADLVSKSAQYCYTHKNNPMGLMLLSEVALGEVHQLKSAKYMEKPPKGKHSTMGVGKTKPLDTEYERWGDDVTVPCGRPVPSGAKNSDLLYNEYIVYNPAQVKLQFLLKVRFQYKR*

Protein Length: 459

Fln nts: TGGACCGCTATAAAATTGAAGAAGCCTCAAGGTCAGATTTGGTAAAAGTCAAGGTCAAGGGTAGAAGTTCCGTTCATGAGGAATCGGGTTTGCAGGAAACAGGTCACATCCTTGAGGAAGGGAAAAATATTTACAATACAACTCTGAAT_-_ATGTCTGACCTATCCACTGGCATCAACAGTTATTATATTCTTCAAGTTATTGAGGATGACAAAAAGACAGGCTGTCATGTTTTCCGCAAGTGGGGCCGAGTTGGTAACAGTAAAATTGGAGGCCAGAAGTTGGAGAAGATGCCAAAATTGGCTGCAATCCATGAATTCAAAAGATTGTTTCTTGAAAAGACAGGAAATGAATGGGAAAGCTGGGTAAACAAAGACGATTTTGAGAAGCAGCCTGGCAAGTTTTTTCCTCTGGAAATTGATTACGGAGTTGATGAATCACGACAAAAAGACATCGGGACCTTGGCTGCAAAGAGCAAACTTGATCCTCGGGTGATAGACCTAATGAAGATGCTTTTTGATCTTGAAACATATAGGGCTGCCATGATGGAGTTTGAGATTAACATGTCAGAAATGCCACTTGGGAAGCTGAGTAAAAGTAACATCCAAAGAGGGTTTGAGGTGTTGACAGAAGTGCAGAACTTGATTGAACTGAATGACTCTGATGTTAGTCGTAAAGAGAGCTTGATTGTTGATGCTAGCAATCGGTTTTTTACACTTATTCCATCAGTGCATCCCCATATTATTAGAGATGAAGATGACCTTAAATCAAAGATTCAAATGTTGGAGACTCTTCGAGACATTGAAATAGCTTCTAGTCTTATTAACTTCGAAAATAATGATGAGGATCCTTTTGATACCAATTATAAGAAACTTCACTGCAATATAACTCCCTTACCTCATGACAGCCCTGATTACCAACTTATTAAAAGATACCTCGAAACTACCCACGCTCCAACACACAAGGAGTGGGCCCTTGAACTGGAGGACGCTTATGCAATTGATAGGGAAGGAGAATATGATGCATATTTGCCTCATAAAAGCAGTCTTAAAAACCGCATGCTGCTTTGGCATGGTTCACGTGTGACAAACTTTGTTGGTATCCTGAGTCAAGGACTTCGAATAGCTCCCCCAGAGGCTCCAGCGACTGGATATATGTTTGGTAAGGGTCTTTACTTTGCAGACCTAGTGAGCAAGAGTGCACAGTATTGTTACACACATAAGAATAATCCCATGGGATTGATGCTGCTCAGTGAGGTAGCGTTGGGTGAAGTTCATCAGCTAAAAAGTGCAAAGTATATGGAGAAGCCTCCCAAAGGAAAGCATTCAACAATGGGCGTGGGTAAGACAAAGCCATTGGATACAGAATACGAACGCTGGGGGGATGATGTGACTGTACCTTGTGGTCGCCCTGTACCTTCAGGTGCTAAAAACAGTGATTTGCTGTACAATGAGTATATCGTATATAATCCTGCTCAGGTGAAGCTGCAGTTTTTGTTAAAGGTGCGCTTCCAATACAAGCGATAA___GAACGTTAGTGAGACTACCAGATCCGGCTGGAGTTTTTGGTTTCAATCTACGAGTAATTAGTGTATTGTCAACTGTAAAGCTCGGGTGTCATGAAAAAGCCTCTGATCTTCATCTTGTCGTAATTACTTGGATGGTTTGCATGTTCAGATATATCTTTACTAGAGTAGAAGAGTACTTGTATATATTTATTATATGGACTTCACCATTGTTGCAGCGATTTTATGGAGGATGACGTGCATGTGTTGAAACCGATTTATACATACACACAGAAATGTGTAAAGTTCTTGAAGGTTTTCCTTAAGAACCTTTTGGTGCCATTCTGGCATTTACCCTGCTCTAAGCCTAATATCGAGTTTTTCTATATATAACTTAATTTATCTCGTGGAAAAAAAAAAAAAAAAAAAAAAAAAGAACCCTGGGTTAATACCACT

Fln Alignment:

Contig1810___MSDLSTGINSYYILQVIEDDKKTGCHVFRKWGRVGNSKIGGQKLEKMPKLAAIHEFKRLFLEKTGNEWESWVNKDDFEKQPGKFFPLEIDYGVDESRQKDIGTLAAKSKLDPRVIDLMKMLFDLETYRAAMMEFEINMSEMPLGKLSKSNIQRGFEVLTEVQNLIELNDSDVSRKESLIVDASNRFFTLIPSVHPHIIRDEDDLKSKIQMLETLRDIEIASSLINFENNDEDPFDTNYKKLHCNITPLPHDSPDYQLIKRYLETTHAPTHKEWALELEDAYAIDREGEYDAYLPHKSSLKNRMLLWHGSRVTNFVGILSQGLRIAPPEAPATGYMFGKGLYFADLVSKSAQYCYTHKNNPMGLMLLSEVALGEVHQLKSAKYMEKPPKGKHSTMGVGKTKPLDTEYERWGDDVTVPCGRPVPSGAKNSDLLYNEYIVYNPAQVKLQFLLKVRFQYK
D5AAL4______________MSDLSTGINSYYILQVIEDDKKAGCHVFRKWGRVGNSKIGGQKLEKMPKLAAIREFKRLFLEKTGNEWESWENKEDFEKQPGKFLPLEIDYGVDESEQKDIGSLGAKSKLDPRVIDLMKMLFDLETYRAAMMEFEINMSEMPLGKLSKSNIQRGFEVLTEVQNLIKQNEPGVALNESLIIDASNRFFTLIPSVHPHIIRDEDDLKSKIQMLETLRDIEIASSLINFKKNDEDPFDSNYKKLQCNISPLPHDSSDYQLIKKYLETTHAPTHKEWALELEDAYAIDRKGEYDAYFPYKSNFKNRMLLWHGSRVTNFVGILSQGLRIAPPEAPATGYMFGKGLYFADLVSKSAQYCYTHKKNPVGLMLLSEVALGEVHELKSAKYMDKPPKGKHSTKGVGKTKPLDTEYERWGDDVTVPCGRPVPSSVKNSDLLYNEYIVYDPAQVKLQFLLKVRFRYK

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
1025	11			88	0.923564
1174			12	87	0.992554
1175			12	87	0.992554
1227	12	87			0.992554
1229	12	87			0.992554
1230	87			12	0.992554
1294	87		12		0.992554
1465	85		14		0.993533
1521		14		85	0.993533
1547	12	87			0.992554
1548	12	87			0.992554
1549			87	12	0.992554
1551		87		12	0.992554
1768		38		61	1.0
1897	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain