SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1780

Length: 1518 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene1780

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pattern formation protein, putative n=1 Tax=Ricinus communis RepID=B9S916_RICCO	-	-	0.0	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Sma3	Pattern formation protein, putative	-	-	3.113e-08	-

Source	Gene names
Sma3	At1g13980; At5g39500; EMB30; F16A14.20; F7A19.7; GEP1; GNOM; GSVIVT00015712001; GSVIVT00016764001; LOC_Os03g46330; OSJNBa0056E06.17; OSJNBb0042G06.4; Os02g0326600; Os03g0666100; OsI_07009; OsI_12908; OsJ_06505; OsJ_12011; P0476C12.30; PHYPADRAFT_175438; P

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	ARF guanyl-nucleotide exchange factor activity	GO:0005086	Molecular Function	-
Sma3	GTP:GDP antiporter activity	GO:0010292	Molecular Function	-
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	-
Sma3	cytokinesis by cell plate formation	GO:0000911	Biological Process	-
Sma3	establishment of planar polarity	GO:0001736	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	cell adhesion	GO:0007155	Biological Process	-
Sma3	unidimensional cell growth	GO:0009826	Biological Process	-
Sma3	embryonic pattern specification	GO:0009880	Biological Process	-
Sma3	longitudinal axis specification	GO:0009942	Biological Process	-
Sma3	phloem or xylem histogenesis	GO:0010087	Biological Process	-
Sma3	lateral root primordium development	GO:0010386	Biological Process	-
Sma3	basipetal auxin transport	GO:0010540	Biological Process	-
Sma3	regulation of ARF protein signal transduction	GO:0032012	Biological Process	-
Sma3	regulation of vesicle targeting, to, from or within Golgi	GO:0048209	Biological Process	-
Sma3	root hair cell differentiation	GO:0048765	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	SEC7-like	IPR000904	-	0.0	-
Sma3	Sugar transporter, conserved site	IPR005829	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G13980.1	GN, VAN7, EMB30 sec7 domain-containing protein chr1:4789587-4794397 FORWARD LENGTH=1451	0.0	62%
RefSeq	Arabidopsis thaliana	NP_001184991.1	Pattern formation protein EMB30 [Arabidopsis thaliana]	0.0	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8A8

Fln msg:

Fln protein: MHAAINHLIPEEDNFSATRFSSLVPVSCLHAANALICPS*IVSREPI*TVIDSGLIQHSYSVFFNEVEIFLPELHGRIVEHKALAF*

Protein Length: 88

Fln nts: AGGCCTCCCAAGAAGTAGGAGACATGTGGTTGCGACTTGTACATTGCTTCCGAAAGGTTTGCATAGATCCGAGAGAGGACATCAGAAATCATGGCATACTGTCGCTGCAGCGGTGCTTGTCAGCAGCAGACGTCATGAACATAACACCAACGAAATGGTCACAATGTTTTGATCAAGTAATTTTTACAATGCTTGATGATTTGCTTGAGATTGCCCAAGGACACTCTCGTAAGGAGTACCGTAACATGGAATATACCCTTCAACATGCAGTGAAGTTCCTGTCGAAATTATTTTTGCAGTTGTTGGATCAGTTATCTTCCGTGTCTAATTTTCGAAAACTGTGGCTTGGGGTGCTCAGCATTATGGAGAAATACATGAAGGCAAAGCTTAGGGGCAAAGGCAGTGAAAAACTTCAAGAACTTATTCCTGAGTTATTGAAGAACATGCTACTGATATTAAAGGCTCGAGGGGTTCTTGTACAAAAAAGTACAGTTAATGGTGATAGCCTGTGGGAGATGACATGGTTACATATCCAAGGGATCTCGCCATGCTTGAAGGCAGAATGTTTCCCTGATAAGGACCCTGAAGATGAGCCAGATCCCAAGTCAAATGCCAGTGAAGAGGATGCAGCAGCTGGTTATGAGGCTGCTGTAAATGATGGTAGCCAGGTGAGACAGGAAAAAGGTGAAAAATAGGATACAAAGTATGAAGGGCATCATTACAAGGTCATACCAGTAGCCTTTTGTTTGGTTA_-_ATGCACGCAGCAATTAATCACTTGATTCCCGAAGAAGACAATTTTTCTGCTACCAGGTTCAGTTCCCTGGTTCCTGTTTCTTGTCTCCATGCAGCTAATGCACTTATCTGTCCTTCCTAAATTGTATCAAGGGAACCAATATGAACAGTGATAGACTCGGGCCTTATCCAACATAGCTATTCGGTATTCTTTAATGAGGTAGAAATCTTCCTGCCAGAATTGCATGGAAGGATTGTTGAGCACAAGGCTCTTGCTTTTTAG___GCATGGTCTTGCGAATTTGTCCCTTATTTACTTGCATGTTTTTGCAGGCAACTATTTTTGCTGTTGTATCATTCATTTAGCCATCTCTAAATGCACCAATTATATCAGGTCTTAAAAGCGTCTCAATGATCTTGATGCTGCAATGATAAGGTTAGCACACCCTGAAGTAAGGATCATTTGTTTCGAGAGTATCTGTGCAACTAACTTTTACAATCAAGAACATTCGAGGCAGGATGTGTATACTAAGAAGCTTGGGGTTTAATAACTTAGTAATCTAGCCCCCGTATAATGGTTGTTCCTGATAAAAGTGCTATTTAATTGCAGTATGAAGTCACCCCCTTTAAAGATCATTAGCTTTTATGCATGACTCACAGTAACTAGCAAGAGGGATTTGGAGCCCTTTTCGCATGCCTCTTTTCCGTGGTCAAATTGTTCTTGGTAACTCAAAGGCATTTTGTTTACCATGTAAGCAACTCTTTCCTTGAGGATGCATTTTACCATTTA

Fln Alignment:

Contig1780___INHLIPEEDNFSATRFSSLVPVSCLHAANALICPS*IVSREPI*TVIDSGLIQHSYSVFFNEVEIFLPELHGRIVEHKALAF
D5A8A8______________INHLIPQGYIFSATRSSSLIPVSCLHATNALICPSKIASRGPIQTVIDSGLIQHSYSVFLNEVEIFFPELHGRIVEHKAHAF

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
533		66	33		0.997452
534		66	33		0.997452
535	66		33		0.997452
720			16	83	0.994512
721	83		16		0.994512
722		83	16		0.994512
1026		85		14	0.999981

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain