SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1777

Length: 2561 nt

UniGene Fasta

>sp_v3.0_unigene1777
TGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGAGATACTGGAGAAGTCTGGAGGTCGATATCGATATAGCGAAGAAAGCTCAGGGGAATGGGAGGAAAAAAGCCATACTGGTAAGCGGACGGAGCAGAAGAGTGTTTTCTTAACGAAAAGCAAGCAGACGAAGAAAGATTTATATGAGGTGAGGTGAGGTGAGTTGTTGGGAAGCAGGAGGCAATGGCGGGGGGTGTTGGGGTTCGAGGGCCTCGCGGGGGAGGATCAAAGGTGGGAGGGGGCTTTTCTTCCTCTTCCTCCTTGAAGCTCAACAAGCTAAAGCTGCTGCTGCTCCTCCTCCTCTTGGTACCCACAATGTTTCTCCTGCTTTTTTTCATCACCACTGGATCTCTGCTCTACCGCGTCAACACCGCCCCTTATCCTGTTCAAATCTCCAGCACAAACACTCCCTACAATAATCACCTCCTACACGCCTACGTGGCCCGGACCTTCCTTGCCCTCAAGTCAGATCCGCTGAAAACCCGGTTGGATCTGCTGTTCAAGCAAGCGTATGACCACCTCAGCCTGATCAATGCATATGCTGCGTATGCCCGCAGACTCAAGCTTGAGAACATGAAGCAGGTTCGAATCTTCACAGATCAGGCCAGAAACTACACGGAACTAATGAATAAACCCGAGTATCGGGCTCTAATGGATACTAATGATATGATCGATGAAGAAACCCTTAGGCAATTTGAGAAGGAGGTGAAAGAAAGGATCAAGGTCACACGGCAATTGATTGCTGACGCTAAAGAGTCGTTTGATAACCAGTTGAAGATCCAAAAGCTCAAGGACACAATATTTGCTGTGAACGACCAGTTAACCCGGGCTAAGAAGCAGGGGGCTTTTGCTAGCTTAATTGCAGCTAAGTCCATCCCTAAGAGCATCCATTGCCTGTCTATGAGGTTAATGGAGGAACGGATCTCACAGCCAGAAAAGTATATTGATAAAGGCGACCCTCCGCCACAGTGGGAGGACCCTAACCTCTACCATTATGCCATATTTTCCGACAATGTCATTGCTGCTTCGGTTGTCGTCAATTCTGCAGTTAAGAATGCCAAAGAACCCTGGAAGCATGTATTTCATGTCGTAACCGACAAGATGAATCTTGCCGCAATGCAGGTCTGGTTCAAGATGCGCTCGCTAAATGGATCACATGTTGAGGTTAAAGCTGTTGAGGATTACAAGTTCTTGAATTCTTCCTATGTTCCGGTTTTGCGACAGCTCGAGTCCGCTAACTTGCAAAGGTTTTACTTCGAGAATAAGTTGGAGAATGCAACAAAGGATGCTCCTAATATGAAGTTTAGGAATCCCAAGTATCTTTCCATGTTGAATCATCTGCGCTTTTATTTGCCTGAGATGTATCCAAAGTTACACCGGATCTTGTTTCTAGATGATGATGTTGTTGTTCAGAAGGACCTGACGGGATTATGGGAGATAGATATGGAAGGAAAGGTTAACGGGGCTGTGGAGACATGCTTTGGTTCATTCCATCGTTATGATAAGTATATGAATTTCTCTCATCCTCTGATCAAGGCAAGATTCAATCCCAAGGCTTGTGGTTGGGCTTATGGAATGAATTTCTTCCACTTGGATGCATGGAGAAGGGAGAAGTGTACTGAAGAATATCACTACTGGCAAAACCTGAATGAGAATCGTACATTGTGGAAGCTGGGGACATTACCACCAGGCCTGATCACTTATTATAAAACAACCAAGCCTCTAGATAAATCTTGGCATGTTCTTGGTCTTGGATATAACCCCAGTATTAGTATGGACGAAATCCGCAATGCAGCCGTTGTTCACTTCAATGGAAATATGAAACCATGGCTTGATATTGGCATGAATCAATATCGAGACACCTGGACCAAGTATGTAGACTATGATATGGAGTTTATACAGATGTGCAACTTCGGTCATTGAAAAAAAATCTCAAGGATTTGGAGTTATTTTATTTAAGCCGGCTAACATGCCTACAATAAGGCATGGTTTTATGTTATGCTTTGTTGCTAATCATATCTCATCAAGTTGCTAAAACATTTTACGGTTTATGTAAGGAGATGTCCGAGAATGTTATAGCTTCCTTTTTAAATTTGTTTAGAGATCTGTTGTGACTTTTGTAATATTTGATTGCGCTGTTGTAAAGTTTCTACCCGTTTAATTGTTATTTGGTTCCTCAATTTATGTTGGTTCATGGGATCATGGACTAAACAGAGAACATATTTCCTTTACTTGGGAATTTATAGAGTACAATAGCAATGCACTCTGGCAGGTAGATTGTGTCATGTCATACCTGGCCAGCTGAGATGTGGCTGAGATGCAGACCTGCTTAGTTTCAAGAAGATAAGGGTTAAGAAAATAATTGGTAGAGCATCTTCTAGTATTAATAATGTTTTGATTTTTGATGTACATTAGGTGCACCTATCCAGGATGTTAATAGAATTTATGTTTTTAGGTGCATCTGTCAGGGATATTAATTGAATTCCCATGGTAAATATTGAACCACAACTTTGCTTTTGCTTTTAT

Ace file of the UniGene sp_v3.0_unigene1777

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glycosyltransferase, CAZy family GT8 n=3 Tax=Malpighiales RepID=B9GQM0_POPTR	-	-	80%
FL-Next	sp=Galacturonosyltransferase 8; Arabidopsis thaliana (Mouse-ear cress).	-	-	83%
Sma3	Glycosyltransferase QUASIMODO1, putative	-	-	-

Source	Gene names
Sma3	RCOM_1749870;

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 8	IPR002495	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G25140.1	GAUT8, QUA1 Nucleotide-diphospho-sugar transferases superfamily protein chr3:9154748-9156642 FORWARD LENGTH=559	83%
RefSeq	Arabidopsis thaliana	NP_189150.1	Galacturonosyltransferase 8 [Arabidopsis thaliana]	83%
RefSeq	Populus trichocarpa	XP_002301803.1	glycosyltransferase, CAZy family GT8 [Populus trichocarpa]	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9LSG3

Fln msg:

Fln protein: MAGGVGVRGPRGGGSKVGGGFSSSSSLKLNKLKLLLLLLLLVPTMFLLLFFITTGSLLYRVNTAPYPVQISSTNTPYNNHLLHAYVARTFLALKSDPLKTRLDLLFKQAYDHLSLINAYAAYARRLKLENMKQVRIFTDQARNYTELMNKPEYRALMDTNDMIDEETLRQFEKEVKERIKVTRQLIADAKESFDNQLKIQKLKDTIFAVNDQLTRAKKQGAFASLIAAKSIPKSIHCLSMRLMEERISQPEKYIDKGDPPPQWEDPNLYHYAIFSDNVIAASVVVNSAVKNAKEPWKHVFHVVTDKMNLAAMQVWFKMRSLNGSHVEVKAVEDYKFLNSSYVPVLRQLESANLQRFYFENKLENATKDAPNMKFRNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTGLWEIDMEGKVNGAVETCFGSFHRYDKYMNFSHPLIKARFNPKACGWAYGMNFFHLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITYYKTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVHFNGNMKPWLDIGMNQYRDTWTKYVDYDMEFIQMCNFGH*

Protein Length: 581

Fln nts: TGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGAGATACTGGAGAAGTCTGGAGGTCGATATCGATATAGCGAAGAAAGCTCAGGGGAATGGGAGGAAAAAAGCCATACTGGTAAGCGGACGGAGCAGAAGAGTGTTTTCTTAACGAAAAGCAAGCAGACGAAGAAAGATTTATATGAGGTGAGGTGAGGTGAGTTGTTGGGAAGCAGGAGGCA_-_ATGGCGGGGGGTGTTGGGGTTCGAGGGCCTCGCGGGGGAGGATCAAAGGTGGGAGGGGGCTTTTCTTCCTCTTCCTCCTTGAAGCTCAACAAGCTAAAGCTGCTGCTGCTCCTCCTCCTCTTGGTACCCACAATGTTTCTCCTGCTTTTTTTCATCACCACTGGATCTCTGCTCTACCGCGTCAACACCGCCCCTTATCCTGTTCAAATCTCCAGCACAAACACTCCCTACAATAATCACCTCCTACACGCCTACGTGGCCCGGACCTTCCTTGCCCTCAAGTCAGATCCGCTGAAAACCCGGTTGGATCTGCTGTTCAAGCAAGCGTATGACCACCTCAGCCTGATCAATGCATATGCTGCGTATGCCCGCAGACTCAAGCTTGAGAACATGAAGCAGGTTCGAATCTTCACAGATCAGGCCAGAAACTACACGGAACTAATGAATAAACCCGAGTATCGGGCTCTAATGGATACTAATGATATGATCGATGAAGAAACCCTTAGGCAATTTGAGAAGGAGGTGAAAGAAAGGATCAAGGTCACACGGCAATTGATTGCTGACGCTAAAGAGTCGTTTGATAACCAGTTGAAGATCCAAAAGCTCAAGGACACAATATTTGCTGTGAACGACCAGTTAACCCGGGCTAAGAAGCAGGGGGCTTTTGCTAGCTTAATTGCAGCTAAGTCCATCCCTAAGAGCATCCATTGCCTGTCTATGAGGTTAATGGAGGAACGGATCTCACAGCCAGAAAAGTATATTGATAAAGGCGACCCTCCGCCACAGTGGGAGGACCCTAACCTCTACCATTATGCCATATTTTCCGACAATGTCATTGCTGCTTCGGTTGTCGTCAATTCTGCAGTTAAGAATGCCAAAGAACCCTGGAAGCATGTATTTCATGTCGTAACCGACAAGATGAATCTTGCCGCAATGCAGGTCTGGTTCAAGATGCGCTCGCTAAATGGATCACATGTTGAGGTTAAAGCTGTTGAGGATTACAAGTTCTTGAATTCTTCCTATGTTCCGGTTTTGCGACAGCTCGAGTCCGCTAACTTGCAAAGGTTTTACTTCGAGAATAAGTTGGAGAATGCAACAAAGGATGCTCCTAATATGAAGTTTAGGAATCCCAAGTATCTTTCCATGTTGAATCATCTGCGCTTTTATTTGCCTGAGATGTATCCAAAGTTACACCGGATCTTGTTTCTAGATGATGATGTTGTTGTTCAGAAGGACCTGACGGGATTATGGGAGATAGATATGGAAGGAAAGGTTAACGGGGCTGTGGAGACATGCTTTGGTTCATTCCATCGTTATGATAAGTATATGAATTTCTCTCATCCTCTGATCAAGGCAAGATTCAATCCCAAGGCTTGTGGTTGGGCTTATGGAATGAATTTCTTCCACTTGGATGCATGGAGAAGGGAGAAGTGTACTGAAGAATATCACTACTGGCAAAACCTGAATGAGAATCGTACATTGTGGAAGCTGGGGACATTACCACCAGGCCTGATCACTTATTATAAAACAACCAAGCCTCTAGATAAATCTTGGCATGTTCTTGGTCTTGGATATAACCCCAGTATTAGTATGGACGAAATCCGCAATGCAGCCGTTGTTCACTTCAATGGAAATATGAAACCATGGCTTGATATTGGCATGAATCAATATCGAGACACCTGGACCAAGTATGTAGACTATGATATGGAGTTTATACAGATGTGCAACTTCGGTCATTGA___AAAAAAATCTCAAGGATTTGGAGTTATTTTATTTAAGCCGGCTAACATGCCTACAATAAGGCATGGTTTTATGTTATGCTTTGTTGCTAATCATATCTCATCAAGTTGCTAAAACATTTTACGGTTTATGTAAGGAGATGTCCGAGAATGTTATAGCTTCCTTTTTAAATTTGTTTAGAGATCTGTTGTGACTTTTGTAATATTTGATTGCGCTGTTGTAAAGTTTCTACCCGTTTAATTGTTATTTGGTTCCTCAATTTATGTTGGTTCATGGGATCATGGACTAAACAGAGAACATATTTCCTTTACTTGGGAATTTATAGAGTACAATAGCAATGCACTCTGGCAGGTAGATTGTGTCATGTCATACCTGGCCAGCTGAGATGTGGCTGAGATGCAGACCTGCTTAGTTTCAAGAAGATAAGGGTTAAGAAAATAATTGGTAGAGCATCTTCTAGTATTAATAATGTTTTGATTTTTGATGTACATTAGGTGCACCTATCCAGGATGTTAATAGAATTTATGTTTTTAGGTGCATCTGTCAGGGATATTAATTGAATTCCCATGGTAAATATTGAACCACAACTTTGCTTTTGCTTTTAT

Fln Alignment:

Contig1777___RTFLALKSDPLKTRLDLLFKQAYDHLSLINAYAAYARRLKLENMKQVRIFTDQARNYTELMNKPEYRALMDTNDM-IDEETLRQFEKEVKERIKVTRQLIADAKESFDNQLKIQKLKDTIFAVNDQLTRAKKQGAFASLIAAKSIPKSIHCLSMRLMEERISQPEKYIDKG-DPPPQWEDPNLYHYAIFSDNVIXXXXXXXXXXXXXXEPWKHVFHVVTDKMNLAAMQVWFKMRSLNGSHVEVKAVEDYKFLNSSYVPVLRQLESANLQRFYFENKLENATKDAPNMKFRNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTGLWEIDMEGKVNGAVETCFGSFHRYDKYMNFSHPLIKARFNPKACGWAYGMNFFHLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITYYKTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVHFNGNMKPWLDIGMNQYRDTWTKYVDYDMEFIQMCNFG
Q9LSG3______________RSMLDIKSDPLKPRLIQIRKQADDHRSLALAYASYARKLKLENSKLVRIFADLSRNYTDLINKPTYRALYDSDGASIEESVLRQFEKEVKERIKMTRQVIAEAKESFDNQLKIQKLKDTIFAVNEQLTNAKKQGAFSSLIAAKSIPKGLHCLAMRLMEERIAHPEKYTDEGKDRPRELEDPNLYHYAIFSDNVIAASVVVNSAVKNAKEPWKHVFHVVTDKMNLGAMQVMFKLKEYKGAHVEVKAVEDYTFLNSSYVPVLKQLESANLQKFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTGLWEIDMDGKVNGAVETCFGSFHRYAQYMNFSHPLIKEKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRALWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVHFNGNMKPWLDIAMNQFRPLWTKHVDYDLEFVQACNFG

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
101	33		66		0.997452
104	33		66		0.997452
2284	91	8			1.0
2285		8	91		1.0
2289	91		8		1.0
2292	91		8		1.0
2293		8	91		1.0
2440			12	87	0.992554
2441			87	12	0.992554

SSRs (tot: 3)

Start position	End position	Sequence	Length
180	198	TGAGG TGAGG TGAGG TGAG	19
317	328	GCT GCT GCT GCT	12
327	338	CTC CTC CTC CTC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain