SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1776

Length: 3224 nt

UniGene Fasta

>sp_v3.0_unigene1776
CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGCACGAGGTGGAAGTCGCCTGGTTATGGTTATAGTTAACGCCCTAGTAGTAGGGTAGGGAAGGGTATATAAAGAAGGCCGTGGTACAAGGCAGAGGAGGACGCAGGCAGAGCGATCCCCACTTTGACAAACACAGGCAGAGAGGCAAAATAATAACAACTGGAATTGTTGCTTTCAACAACTAAGCAGTTGATCGAAGCCCCATGGATTTAAACGCCTCTCCTCAGCCTGACGACGACGAAGAAGAGCAGGAACATGAAGAAGTCTATGAAGTCTATGAGGAAGAGGAACAGCAACATCAACAGCCGCACGAAGTCGAGGAAGAGCGAGCCGAAGAATATGTTGAGTCCGGCGTCGAGACATTCCGAAGGGAACGTGAAGAGAGGCGACGAAGGATGAAAAGAGAACGCCCGGATGATGGATCAAAGCAAACTTTCAAAACACCACGAGTGGAGAGTAGACCCAATGATAGAATGAAGCATATCCCCGATGGTTGGATCGGTTGTCCAGCAGTTGGTCAGCCTCTTGCAAACTTAATTCCTTCGAAAGTGCCTCTTGGGGAGGCCTTTAATGATTGTATTCCTCCTGGAAGTAGATATTCTGTCAAGCAAGTGTTGCACCAACAACGGGTTTTGATGAGAGAGGTGGCTTTGGTAATTGATCTGACAAATACTTCACGCTACTATCATCCTTCAGATTGGTCAAACAAGGGCATCAAGCATTTCAAGATTGCATGCAAAGGACGAGATGCAGTTCCAGACAATGAATCTGTAAATATTTTTGTGTACGAAGCATTGCGTTTCTTCCATAATCATAAACAAAGTGGGCAGAACAAGTGTATTTTGGTTCATTGTACCCATGGCCATAACCGCACTGGGTTTATGATTGTTAATTATCTTGTTCGCATACAAGGCTTGACTGTTAAAGAGGCTTTGCAGCGCTTTGCTGCTGCAAGACCTCCAGGGATTTATAAACAGGATTATATTGATGCATTGTTTAGGTTTTATCATGAGAGAAAACCAGAAACAATGCTTTACCCTTCCACACCAGAATGGAAAAGATCAGTTAGTGTTGATCTTAATGGCAATGCAATGGAGGATGAAGATGATGATGGTGACATTATGGCTGCTTTGCAGGAAGTTGAGGAAGAAAATGAATTGATGACAAATGATGATATCCTAGGTGATGCAATTCCTTCAGCTCAGCAAACAGATATGCAGAAGATTTGTTGTATGGCGCTTGGAGTAGAGTCCCATGGAAATTCTCATTTTCCAGGATCTCAGCCAGTTTCATTGGACAGAGCACACCTACAGCTCCTGAGGCAGCGGTATTATTATGCCACATGGAAAGCTGATGGAACTCGATATATGATGCTTATCACACGTGATGGATGTTACTTGATTGATAGGAAGTTCAATTTTCGTAGGGTTCAACTCCGTTTCCCTAAAAGGGGTGTGCCGCAGGGTTCTTTTGAATCTCATCACCTTACCTTACTGGATGGAGAAATGATAATTGACACTGTACCTGAAACGCACGAGCAAAAGAGACGATATTTGGTGTATGATTTGATGATGCTTAATCAACAATCTCAGATAAAGCTGCCTTTTCACGAGAGGTGGAAACTAATAGAGAAGGAAATAATTGAACCTCGGACTCATGACATTAAAACGAATGCACTATATTGTTATGACATGGAAGCAGTTCGGGTCAGAAGAAAAGATTTTTGGATGCTTTCAGCAGTTGGTAAAGTACTAAAGGATTTCATCCCAAGGCTCTCACATCAAGCAGATGGCCTTATATTTCAGGGTTGGGACGATCCATATGTTCCTCGCACACATGATGGGCTTCTTAAATGGAAATATGCTCACATGAATTCAGTTGATTTCCTTTTTGAGGTAGGAGATGAGAATCGACAATCAATGTATCTATTTGACAAGGGAAGAAAACGAAAGCTGGAAGGAGCTCGTGTCAATTTTCCAGATGATGAGGACCCATCAAGCTTTTCTGGGAAAATTATAGAGTGTTCCTGGAATGTAGAGGAAGGCACATGGCAGTATATGCGTGTCAGGACAGATAAGCCTACTCCAAATGGATGGAATACATATTTAAAGGTGATGAGAAGCATAGAAGACAACATCAATCAAGATATTATATTAGAGGAAATTGCAGATATTATACGTCTGCCAATGTATGCTGATCGAATAAAACAAGAAACGGCACGCATAAAGCATGATTTACAACGCAGGAGATGATTGTGGGTCACACCAAAACTCTGGTCACTGACTAGGTATCGGAAGTCTGGACCTAAATGCTCGAAAACTTCACAACATCTTTCGTTTGGCATCTATCTTATATAGAATGTTAGTGCCAATGTGCTTGCTTAAGTTCTTCGGATGTTTTGAAATGGAGGGCTGTGCTAGTTTTTAAGGAATCAAAGTATTTCCCCTTTTCCTGCTCTTTGTAGACATCGGTTTTTCTCCCAGATCAACAACACCTTTTGTTTGGCTGTTCATTAATCGGTTGTAACTTAAGCAGCTGCTTGAAAAGCATCATATTGTAGATTCTTCACCAGTTGGTGGCTCATGTAAGAAGAAAATAGGATAGGATCATATCATATATTCATGGCCATTTTTTGGCCAGTGTAAGAGCTTTGAAGAAAATGGGATTCGATTTGTCCTGAAATCCAATCACGTCTTCAAATTGTCATTGTCATCTCAAATTAGAGCCCATCGGACTATGTCACAATCAGTCCAATGTAGATGAACTTGGGTGATTATATGGGGAATGTATGACTACCCTTGAAATGGAGACTATGTTGGGATTATTCATGGACAAATATTATATACATGAGCTACTTTGCCTTGTCAGCTGTGATGCCATTTGTCTTCAAAGTGGGGGATGTTTAACAGGTTCTTCATTTGAAGTGTGGTTGAATGATTTTAGTAGGATTCTAGTACGAATGGAATCATAGTGTAAACATTGAATCAACTACAATGCTGTATTTTCTTAAACAAAGAAAAATTTTACCCCTTGAATTTCATTGTAGGGAAACATATTTGGACTGACCAGAATATTGCCCTTGGGATGGGAGACCATTCGAGTCCACACATTATTGCTATTGTGCAAGTTTCGTATAGATTGTCTTTACACGTGAAAAAGAGGTCACTCATGGATTGCCTTCTAATTAC

Ace file of the UniGene sp_v3.0_unigene1776

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	mRNA capping enzyme-like protein [Arabidopsis thaliana] gb\|AEE74723.1\| mRNA capping enzyme-like protein [Arabidopsis thaliana]	-	-	0.0	58%
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	60%
Sma3	mRNA capping enzyme, putative	-	-	1.113e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Polynucleotide 5'-phosphatase.	EC:3.1.3.33	-	1.113e-08	-

Source	Gene names
Sma3	At3g09100; At5g01290; At5g28210; F26C17.2; F7J8_270; GSVIVT00021459001; GSVIVT00021461001; LOC_Os11g11070; LOC_Os12g09120; MZB10.13; Os11g0217500; Os12g0193200; OsI_35554; OsI_37750; OsJ_33380; OsJ_35498; PHYPADRAFT_115854; POPTRDRAFT_1080718; POPTRDRAFT_

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA ligase (ATP) activity	GO:0003910	Molecular Function	-
Sma3	mRNA guanylyltransferase activity	GO:0004484	Molecular Function	-
Sma3	polynucleotide 5'-phosphatase activity	GO:0004651	Molecular Function	-
Sma3	protein tyrosine phosphatase activity	GO:0004725	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein tyrosine/serine/threonine phosphatase activity	GO:0008138	Molecular Function	-
Sma3	DNA replication	GO:0006260	Biological Process	-
Sma3	DNA repair	GO:0006281	Biological Process	-
Sma3	DNA recombination	GO:0006310	Biological Process	-
Sma3	mRNA capping	GO:0006370	Biological Process	-
Sma3	protein dephosphorylation	GO:0006470	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Dual specificity phosphatase, catalytic domain	IPR000340	-	-
Sma3	Protein-tyrosine/Dual-specificity phosphatase	IPR000387	-	-
Sma3	mRNA capping enzyme	IPR001339	-	-
Sma3	DNA ligase, ATP-dependent, central	IPR012310	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	mRNA capping enzyme, C-terminal	IPR013846	-	-
Sma3	Protein-tyrosine phosphatase, active site	IPR016130	-	-
Sma3	mRNA capping enzyme, bifunctional	IPR017074	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G09100.2	-	58%
RefSeq	Arabidopsis thaliana	NP_974263.1	mRNA capping enzyme-like protein [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002308205.1	predicted protein [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: I1J767

Fln msg:

Fln protein: MDLNASPQPDDDEEEQEHEEVYEVYEEEEQQHQQPHEVEEERAEEYVESGVETFRREREERRRRMKRERPDDGSKQTFKTPRVESRPNDRMKHIPDGWIGCPAVGQPLANLIPSKVPLGEAFNDCIPPGSRYSVKQVLHQQRVLMREVALVIDLTNTSRYYHPSDWSNKGIKHFKIACKGRDAVPDNESVNIFVYEALRFFHNHKQSGQNKCILVHCTHGHNRTGFMIVNYLVRIQGLTVKEALQRFAAARPPGIYKQDYIDALFRFYHERKPETMLYPSTPEWKRSVSVDLNGNAMEDEDDDGDIMAALQEVEEENELMTNDDILGDAIPSAQQTDMQKICCMALGVESHGNSHFPGSQPVSLDRAHLQLLRQRYYYATWKADGTRYMMLITRDGCYLIDRKFNFRRVQLRFPKRGVPQGSFESHHLTLLDGEMIIDTVPETHEQKRRYLVYDLMMLNQQSQIKLPFHERWKLIEKEIIEPRTHDIKTNALYCYDMEAVRVRRKDFWMLSAVGKVLKDFIPRLSHQADGLIFQGWDDPYVPRTHDGLLKWKYAHMNSVDFLFEVGDENRQSMYLFDKGRKRKLEGARVNFPDDEDPSSFSGKIIECSWNVEEGTWQYMRVRTDKPTPNGWNTYLKVMRSIEDNINQDIILEEIADIIRLPMYADRIKQETARIKHDLQRRR*

Protein Length: 684

Fln nts: CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGCACGAGGTGGAAGTCGCCTGGTTATGGTTATAGTTAACGCCCTAGTAGTAGGGTAGGGAAGGGTATATAAAGAAGGCCGTGGTACAAGGCAGAGGAGGACGCAGGCAGAGCGATCCCCACTTTGACAAACACAGGCAGAGAGGCAAAATAATAACAACTGGAATTGTTGCTTTCAACAACTAAGCAGTTGATCGAAGCCCC_-_ATGGATTTAAACGCCTCTCCTCAGCCTGACGACGACGAAGAAGAGCAGGAACATGAAGAAGTCTATGAAGTCTATGAGGAAGAGGAACAGCAACATCAACAGCCGCACGAAGTCGAGGAAGAGCGAGCCGAAGAATATGTTGAGTCCGGCGTCGAGACATTCCGAAGGGAACGTGAAGAGAGGCGACGAAGGATGAAAAGAGAACGCCCGGATGATGGATCAAAGCAAACTTTCAAAACACCACGAGTGGAGAGTAGACCCAATGATAGAATGAAGCATATCCCCGATGGTTGGATCGGTTGTCCAGCAGTTGGTCAGCCTCTTGCAAACTTAATTCCTTCGAAAGTGCCTCTTGGGGAGGCCTTTAATGATTGTATTCCTCCTGGAAGTAGATATTCTGTCAAGCAAGTGTTGCACCAACAACGGGTTTTGATGAGAGAGGTGGCTTTGGTAATTGATCTGACAAATACTTCACGCTACTATCATCCTTCAGATTGGTCAAACAAGGGCATCAAGCATTTCAAGATTGCATGCAAAGGACGAGATGCAGTTCCAGACAATGAATCTGTAAATATTTTTGTGTACGAAGCATTGCGTTTCTTCCATAATCATAAACAAAGTGGGCAGAACAAGTGTATTTTGGTTCATTGTACCCATGGCCATAACCGCACTGGGTTTATGATTGTTAATTATCTTGTTCGCATACAAGGCTTGACTGTTAAAGAGGCTTTGCAGCGCTTTGCTGCTGCAAGACCTCCAGGGATTTATAAACAGGATTATATTGATGCATTGTTTAGGTTTTATCATGAGAGAAAACCAGAAACAATGCTTTACCCTTCCACACCAGAATGGAAAAGATCAGTTAGTGTTGATCTTAATGGCAATGCAATGGAGGATGAAGATGATGATGGTGACATTATGGCTGCTTTGCAGGAAGTTGAGGAAGAAAATGAATTGATGACAAATGATGATATCCTAGGTGATGCAATTCCTTCAGCTCAGCAAACAGATATGCAGAAGATTTGTTGTATGGCGCTTGGAGTAGAGTCCCATGGAAATTCTCATTTTCCAGGATCTCAGCCAGTTTCATTGGACAGAGCACACCTACAGCTCCTGAGGCAGCGGTATTATTATGCCACATGGAAAGCTGATGGAACTCGATATATGATGCTTATCACACGTGATGGATGTTACTTGATTGATAGGAAGTTCAATTTTCGTAGGGTTCAACTCCGTTTCCCTAAAAGGGGTGTGCCGCAGGGTTCTTTTGAATCTCATCACCTTACCTTACTGGATGGAGAAATGATAATTGACACTGTACCTGAAACGCACGAGCAAAAGAGACGATATTTGGTGTATGATTTGATGATGCTTAATCAACAATCTCAGATAAAGCTGCCTTTTCACGAGAGGTGGAAACTAATAGAGAAGGAAATAATTGAACCTCGGACTCATGACATTAAAACGAATGCACTATATTGTTATGACATGGAAGCAGTTCGGGTCAGAAGAAAAGATTTTTGGATGCTTTCAGCAGTTGGTAAAGTACTAAAGGATTTCATCCCAAGGCTCTCACATCAAGCAGATGGCCTTATATTTCAGGGTTGGGACGATCCATATGTTCCTCGCACACATGATGGGCTTCTTAAATGGAAATATGCTCACATGAATTCAGTTGATTTCCTTTTTGAGGTAGGAGATGAGAATCGACAATCAATGTATCTATTTGACAAGGGAAGAAAACGAAAGCTGGAAGGAGCTCGTGTCAATTTTCCAGATGATGAGGACCCATCAAGCTTTTCTGGGAAAATTATAGAGTGTTCCTGGAATGTAGAGGAAGGCACATGGCAGTATATGCGTGTCAGGACAGATAAGCCTACTCCAAATGGATGGAATACATATTTAAAGGTGATGAGAAGCATAGAAGACAACATCAATCAAGATATTATATTAGAGGAAATTGCAGATATTATACGTCTGCCAATGTATGCTGATCGAATAAAACAAGAAACGGCACGCATAAAGCATGATTTACAACGCAGGAGATGA___TTGTGGGTCACACCAAAACTCTGGTCACTGACTAGGTATCGGAAGTCTGGACCTAAATGCTCGAAAACTTCACAACATCTTTCGTTTGGCATCTATCTTATATAGAATGTTAGTGCCAATGTGCTTGCTTAAGTTCTTCGGATGTTTTGAAATGGAGGGCTGTGCTAGTTTTTAAGGAATCAAAGTATTTCCCCTTTTCCTGCTCTTTGTAGACATCGGTTTTTCTCCCAGATCAACAACACCTTTTGTTTGGCTGTTCATTAATCGGTTGTAACTTAAGCAGCTGCTTGAAAAGCATCATATTGTAGATTCTTCACCAGTTGGTGGCTCATGTAAGAAGAAAATAGGATAGGATCATATCATATATTCATGGCCATTTTTTGGCCAGTGTAAGAGCTTTGAAGAAAATGGGATTCGATTTGTCCTGAAATCCAATCACGTCTTCAAATTGTCATTGTCATCTCAAATTAGAGCCCATCGGACTATGTCACAATCAGTCCAATGTAGATGAACTTGGGTGATTATATGGGGAATGTATGACTACCCTTGAAATGGAGACTATGTTGGGATTATTCATGGACAAATATTATATACATGAGCTACTTTGCCTTGTCAGCTGTGATGCCATTTGTCTTCAAAGTGGGGGATGTTTAACAGGTTCTTCATTTGAAGTGTGGTTGAATGATTTTAGTAGGATTCTAGTACGAATGGAATCATAGTGTAAACATTGAATCAACTACAATGCTGTATTTTCTTAAACAAAGAAAAATTTTACCCCTTGAATTTCATTGTAGGGAAACATATTTGGACTGACCAGAATATTGCCCTTGGGATGGGAGACCATTCGAGTCCACACATTATTGCTATTGTGCAAGTTTCGTATAGATTGTCTTTACACGTGAAAAAGAGGTCACTCATGGATTGCCTTCTAATTAC

Fln Alignment:

Contig1776___GSKQTFKTPRVESRPNDRMKHIPDGWIGCPAVGQPLANLIPSKVPLGEAFNDCIPPGSRYSVKQVLHQQRVLMREVALVIDLTNTSRYYHPSDWSNKGIKHFKIACKGRDAVPDNESVNIFVYEALRFFHNHKQSGQNKCILVHCTHGHNRTGFMIVNYLVRIQGLTVKEALQRFAAARPPGIYKQDYIDALFRFYHERKPETMLYPSTPEWKRSVSVDLNGNAMEDEDDDGDIMAALQEVEEENELMTNDDILGDAIPSAQQTDMQKIC--CMALGVESHGNSHFPGSQPVSLDRAHLQLLRQRYYYATWKADGTRYMMLITRDGCYLIDRKFNFRRVQLRFPKRGVPQGSFE-SHHLTLLDGEMIIDTVPETHEQKRRYLVYDLMMLNQQSQIKLPFHERWKLIEKEIIEPRTHD-----IKTNALYCYDMEAVRVRRKDFWMLSAVGKVLKDFIPRLSHQADGLIFQGWDDPYVPRTHDGLLKWKYAHMNSVDFLFEVGDENRQSMYLFDKGRKRKLEGARVNFPDDEDPSSFSGKIIECSWNVEEGTWQYMRVRTDKPTPNGWNTYLKVMRSIEDNINQDIILEEIADIIRLPMYADRIKQETARIKH-DLQRRR
I1J767______________GYDQLFHTKNQRSYDKSRL---PPGWLDCPSSGQEICCMIPSKVPLGESFNDCIPPGKRYSFKQVIHQQRVLGRKLGLVIDLTNTTRYYPVSDLKKECIKHVKIQCRGRDSVPDNLSVNQFVYEVTQFLSRQKHS--KKYILVHCTHGHNRTGYMIIHYLMRAMSMSVTQAIKIFSEARPPGIYKPDYIDALYSFYHEKKPEMVVCPPTPEWKRSSEFDLNGEAVPDDDDDG-------ENHETDTRMTNDDVLGDEIPTDQQDALRQFCYQTLKLGVGARGHTQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRSFNFRRVQMRFPCRSTNDGLGEKTHHFTLLDGEMVIDTLPDSQKQERRYLIYDLMAINQVSVIERPFYERWKMLEKEVIEPRNHERHHIYQSRNPYYRYDLEPFRVRRKDFWLLSTVTKLLKEFIKRLSHEADGLIFQGWDDPYIPRTHEGLLKWKYAYLNSVDFLFEV-DGDRELLFLYERGKKKLLEGNRVEFTDGSDPSLYSGKIIECSWDFDKLEWKFMRIRTDKSTPNEFNTYRKVMRSIRDNITEEDLLNEISEIIRLPMYADRIRIDSKANQHANVARRR

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
874	11		88		0.923564
875		11		88	0.923564
919	11			88	0.923564
1069		44		55	1.0
1571		81		18	0.999994
2670		3		71	1.0
2854	2	42	53		1.0
2952		77		22	0.999999

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain