SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1771

Length: 3231 nt

UniGene Fasta

>sp_v3.0_unigene1771
CGCCGGCGTCGCTATATATGGGACGGAGTTTCAGAGTGCTGTCAGTTGAGTAATCAGCTGCCTCAGTCCATAACAGCCTCGTTTGAGCAATTCAAGAAGATTCTGTTCTTTGAGTCTTGCAGAGGGGAAGTAATTTGGAAGATTTTGCGCGCCCTTGGACGGACGCTGTTAGATCGGATTTTTGGAGGTTAGCATGGCGACTTTTAAGACGAATCCCCAGGTTAATGGTATTGACAGTCACGGCGTCCGGGGAATTAGCTGCAAAACCGGGCGCTTGGGCGTCGGCAGAAAAGCGGATTCTCCCAGACACAACACCGTGCCTACTCAGAATCAGTTTGATTTCCACACATCGAGCTTTGATTTTCAGAGCAATCGAATTCCGGGAGAATTCAAAGTGAAAGAGGTTGAGGATGATGAAGAAGAGGAAGAAGAGGAGGAGAAAGTGGTGTGGGATTTTCCGAAAGACAATCAAGTCGGAAATACAGATCCCCGGGACATCGGAACTGCCGATGAATGGATTAAGAGGAATGCCCAGTTGATTCGTCTCACCGGAAAACATCCCTTCAATTCCGAACCACCGCTGTGCCAGCTGATGAAGGCCGGGTTCGTTACCCCTGCGTCTCTGCATTATGTGCGCAATCATGGCTACGTCCCACGCGGGAATTTCGAAGACTGGACTGTAGAAGTCTCTGGGTTTGTAAAGAGACCCATGAAATTTACCATGCGTCAGCTCTTGGATGAGTTCAAACCCCGTGAGCTTCCCGTCACGCTCGTCTGCGCGGGGAATAGAAGAAAGGAGCAGAATATGGTGAAGAAAACCATTGGATTTAACTGGGGCGCCGCGGGAGTTTCGACCTCGGTTTGGCGAGGCGCCCGGCTCTACGACGTTTTGCGCCGCTGCGGAATCATGTCGAAAAAGAAAGGCGCGCGCTACGTGTGCTTTGAAGGGGCCGAGGATCTGCCCGGCGGAGGCGGCTGCAAGTATGCAACCAGCGTTTCAGTCGACATCGCAATGGACGAGTCGAGGGATTTGATGCTCGCGTATTTGCAGAACGGCGAATTTCTGCAGCCGGATCATGGGTTTCCGGTGAGAATGATAATTCCGGGATTTATCGGAGGCCGAATGGTGAAATGGCTGAAGCGCATCGTGGTCACGTCTGGGGAATCCGATAACTTTTATCATTTCAATGACAACCGTGTTCTCCCTTCTCATGTCGATGCCGATACAGCGAATTCGGAAGGCTGGTGGCAAAAACCAGAATACATCATCAATGACCTCAACATAAACTCTGTCATCACAACGCCGTGCCATGAGGAAATCTTGCCGATCAATTCTGCTACCACGCAGAGACCTTACACTCTGCGAGGATACGCATATTCTGGCGGCGGGCGAAAAGTTATAAGAGTCGAAATAACGTTCGATGGCGGAGAAACGTGGAAGCTATGTACAGTGAATCGCCCGGAAAAACCCACGAAATACAACAAGCACTGGTGCTGGTGCTTTTGGGAGCTGGATGTCGAAGTCATGGAGCTGTTAGCCGCGAAGGAGATCGCTGTCAGGGCTTGGGATGAAGCCATGAATACGCAGCCCAAGGATCTCACATGGAACGTTATGGGTATGATGAACAACTGCTGGTTCAGGGTGAAGCTAAATGTCTGCAAACCTCATCAAGGCGAAATCGGACTGATGTTCGAGCACCCGACCCGGCCGGGCAACCAGTCCGGAGGCTGGATGCTCCGAGACAAGCAAAATGAAAACAAAGAACAGCAAACCACAGTGAAGAAAACCTTCTCTTCCCCTGTAACGAACCCCGTGTCAAGGCACATCACGCTTTCTGAGGTCCAGAAACACAGCACGGCCGATTCTTGTTGGATTATCGTGCATCATCATGTTTACGACTGTACGAGGTTTCTCAAGGATCACCCGGGCGGAATGGACAGCATTCTCATCAACGCCGGTTTGGATTGCACGGACGAAACCGACGCAATCCACTCAACCAAAGGCAAGGCCATGCTGGAGGACTACAGAATAGGCGAGCTCGTGACGGCGGCCGCGGAGAATGGATCATACTGCCCTTCCCCGTCTCCGTCTCCATCTCCGTCTGCGTCTCCATCCCCGGACAATTCCTTGCATGGCGGATCGAGGGCAATGACAGCCCTGGTGCAGCAGCCCAAGTCGTTGCCCTCGATCAACGAGGTCGCGATTTCGAAACTCGTGGCTCTCAATCCGAAGCAAAAGATCTCCTGCAGGCTCGTCTCGAAGACCCACGTAAGTCGTGACGTAAGATTGTTCAGATTCGCACTTCCGAACCCGGATCAAACACTGGGTCTCCCAACTGGCAAACATATTTTTCTGTCTGCGAACATAAACGGGAAGCTCTGCATCCGGGCTTTCACGCCCGTGAGCTCAGACGACGAAGCAGGATTCTTTGAGCTCCTAATCAAGATCTATTTCAAGAACGTCCACCCCAATTTCCCCCAAGGGGGCCTCATGTCGCAGTACCTGGAGGGCTTGGCTCTGAACAATTCCATAGACGTCAAGGGACCTCTTGGTCACATCCAGTACAGCGGGCGGGGAAATTTCACCATCAATGGAAAGCACAAATCAGCCAAGAAAATCGCAATGCTGGCAGGGGGCACGGGAATTACGCCTCTCTATCAAATCATCAGAGCCATTCTCAAAGATCCCGAGGACGAGACTGAGATGTTTCTTGTATATGCCAACAGAACCGAAGATGACATTCTTCTCCGTGACCAGCTGGACAATTGGGCCAACAACCATTCAAACTTCAAGCTGTGGTATGCCATCAGTAACTCTGTAAGAGATAACTGGAAATACAGCGTTGGTTATGTGGGGGAGGCGATCCTGAAACAACATATTCCTGATGGCTCTTCCGAAGGAACCATTGCTCTACTGTGTGGCCCTCCCCCCATGATCCAAGATGCTTGCCTACCTAACCTGGCCAAAATGAATTATGACATTCAGAATTCGTGTTTTCAGTTCTAATTACACCCTTCTGGTTAATCTAATTGGGACATCCCCTCCCACATCCTGTTATTAATTAAGCCGTAGTCTAGTGTATAAAATCTGTTGATGTGTACAGCATAAAGTTAATTTCCTCCTTTTCATTTGCAGAAGCGTTGCTACTCTCAGTATTGAGCACTCCTGATCTCTGTAACTTTTCTGAACCATGTGGACTTTTTCTGATGCAGGGATTTAGGGAATTCAGT

Ace file of the UniGene sp_v3.0_unigene1771

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to nitrate reductase n=1 Tax=Vitis vinifera RepID=UPI00019854B3	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	32%
Sma3	Nitrate reductase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Transferred entry: 1.7.1.1.	EC:1.6.6.1	-	4.085e-11	-
Sma3	Nitrate reductase (NADH).	EC:1.7.1.1	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Nitrogen metabolism	00910		0.0	%
Sma3	Nitrate reductase (NAD(P)H).	EC:1.7.1.2	-	1.625e-12	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Nitrogen metabolism	00910		1.625e-12	%

Source	Gene names
Sma3	AT1G37130; AT1G77760; At1g37130; At1g77760; BCNR-A; CHL3; CHLREDRAFT_184661; F28L22.2; GSVIVT00015320001; GSVIVT00015321001; INR1; INR2; LOC_Os08g36480; LOC_Os10g17780; MICPUCDRAFT_35319; MICPUCDRAFT_57689; MICPUN_63089; MICPUN_68463; NAR; NAR-7; NAR1S; N

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	nitrate reductase (NADH) activity	GO:0009703	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	molybdenum ion binding	GO:0030151	Molecular Function	-
Sma3	oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor	GO:0046857	Molecular Function	-
Sma3	metal ion binding	GO:0046872	Molecular Function	-
Sma3	transition metal ion binding	GO:0046914	Molecular Function	-
Sma3	nitrate reductase [NAD(P)H] activity	GO:0050463	Molecular Function	-
Sma3	nitrate reductase (NADPH) activity	GO:0050464	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	nitric oxide biosynthetic process	GO:0006809	Biological Process	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	response to light stimulus	GO:0009416	Biological Process	-
Sma3	response to symbiotic fungus	GO:0009610	Biological Process	-
Sma3	response to herbicide	GO:0009635	Biological Process	-
Sma3	nitrate assimilation	GO:0042128	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Oxidoreductase, molybdopterin-binding domain	IPR000572	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Cytochrome b5	IPR001199	-	-
Sma3	Oxidoreductase FAD/NAD(P)-binding	IPR001433	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Flavoprotein pyridine nucleotide cytochrome reductase	IPR001709	-	-
Sma3	NADH:cytochrome b5 reductase (CBR)	IPR001834	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Moybdenum cofactor oxidoreductase, dimerisation	IPR005066	-	-
Sma3	Remorin, C-terminal	IPR005516	-	-
Sma3	Oxidoreductase, FAD-binding domain	IPR008333	-	-
Sma3	Eukaryotic molybdopterin oxidoreductase	IPR008335	-	-
Sma3	Nitrate reductase NADH dependent	IPR012137	-	-
Sma3	Ferredoxin reductase-type FAD-binding domain	IPR017927	-	-
Sma3	Cytochrome b5, heme-binding site	IPR018506	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G37130.1	NIA2, B29, NIA2-1, CHL3, NR, NR2, ATNR2 nitrate reductase 2 chr1:14158617-14161652 FORWARD LENGTH=917	63%
RefSeq	Arabidopsis thaliana	NP_174901.1	Nitrate reductase (NADH) [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002301015.1	predicted protein [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9R3

Fln msg: your sequence is longer than subject: 938 - 398

Fln protein: MATFKTNPQVNGIDSHGVRGISCKTGRLGVGRKADSPRHNTVPTQNQFDFHTSSFDFQSNRIPGEFKVKEVEDDEEEEEEEEKVVWDFPKDNQVGNTDPRDIGTADEWIKRNAQLIRLTGKHPFNSEPPLCQLMKAGFVTPASLHYVRNHGYVPRGNFEDWTVEVSGFVKRPMKFTMRQLLDEFKPRELPVTLVCAGNRRKEQNMVKKTIGFNWGAAGVSTSVWRGARLYDVLRRCGIMSKKKGARYVCFEGAEDLPGGGGCKYATSVSVDIAMDESRDLMLAYLQNGEFLQPDHGFPVRMIIPGFIGGRMVKWLKRIVVTSGESDNFYHFNDNRVLPSHVDADTANSEGWWQKPEYIINDLNINSVITTPCHEEILPINSATTQRPYTLRGYAYSGGGRKVIRVEITFDGGETWKLCTVNRPEKPTKYNKHWCWCFWELDVEVMELLAAKEIAVRAWDEAMNTQPKDLTWNVMGMMNNCWFRVKLNVCKPHQGEIGLMFEHPTRPGNQSGGWMLRDKQNENKEQQTTVKKTFSSPVTNPVSRHITLSEVQKHSTADSCWIIVHHHVYDCTRFLKDHPGGMDSILINAGLDCTDETDAIHSTKGKAMLEDYRIGELVTAAAENGSYCPSPSPSPSPSASPSPDNSLHGGSRAMTALVQQPKSLPSINEVAISKLVALNPKQKISCRLVSKTHVSRDVRLFRFALPNPDQTLGLPTGKHIFLSANINGKLCIRAFTPVSSDDEAGFFELLIKIYFKNVHPNFPQGGLMSQYLEGLALNNSIDVKGPLGHIQYSGRGNFTINGKHKSAKKIAMLAGGTGITPLYQIIRAILKDPEDETEMFLVYANRTEDDILLRDQLDNWANNHSNFKLWYAISNSVRDNWKYSVGYVGEAILKQHIPDGSSEGTIALLCGPPPMIQDACLPNLAKMNYDIQNSCFQF*

Protein Length: 939

Fln nts: CGCCGGCGTCGCTATATATGGGACGGAGTTTCAGAGTGCTGTCAGTTGAGTAATCAGCTGCCTCAGTCCATAACAGCCTCGTTTGAGCAATTCAAGAAGATTCTGTTCTTTGAGTCTTGCAGAGGGGAAGTAATTTGGAAGATTTTGCGCGCCCTTGGACGGACGCTGTTAGATCGGATTTTTGGAGGTTAGC_-_ATGGCGACTTTTAAGACGAATCCCCAGGTTAATGGTATTGACAGTCACGGCGTCCGGGGAATTAGCTGCAAAACCGGGCGCTTGGGCGTCGGCAGAAAAGCGGATTCTCCCAGACACAACACCGTGCCTACTCAGAATCAGTTTGATTTCCACACATCGAGCTTTGATTTTCAGAGCAATCGAATTCCGGGAGAATTCAAAGTGAAAGAGGTTGAGGATGATGAAGAAGAGGAAGAAGAGGAGGAGAAAGTGGTGTGGGATTTTCCGAAAGACAATCAAGTCGGAAATACAGATCCCCGGGACATCGGAACTGCCGATGAATGGATTAAGAGGAATGCCCAGTTGATTCGTCTCACCGGAAAACATCCCTTCAATTCCGAACCACCGCTGTGCCAGCTGATGAAGGCCGGGTTCGTTACCCCTGCGTCTCTGCATTATGTGCGCAATCATGGCTACGTCCCACGCGGGAATTTCGAAGACTGGACTGTAGAAGTCTCTGGGTTTGTAAAGAGACCCATGAAATTTACCATGCGTCAGCTCTTGGATGAGTTCAAACCCCGTGAGCTTCCCGTCACGCTCGTCTGCGCGGGGAATAGAAGAAAGGAGCAGAATATGGTGAAGAAAACCATTGGATTTAACTGGGGCGCCGCGGGAGTTTCGACCTCGGTTTGGCGAGGCGCCCGGCTCTACGACGTTTTGCGCCGCTGCGGAATCATGTCGAAAAAGAAAGGCGCGCGCTACGTGTGCTTTGAAGGGGCCGAGGATCTGCCCGGCGGAGGCGGCTGCAAGTATGCAACCAGCGTTTCAGTCGACATCGCAATGGACGAGTCGAGGGATTTGATGCTCGCGTATTTGCAGAACGGCGAATTTCTGCAGCCGGATCATGGGTTTCCGGTGAGAATGATAATTCCGGGATTTATCGGAGGCCGAATGGTGAAATGGCTGAAGCGCATCGTGGTCACGTCTGGGGAATCCGATAACTTTTATCATTTCAATGACAACCGTGTTCTCCCTTCTCATGTCGATGCCGATACAGCGAATTCGGAAGGCTGGTGGCAAAAACCAGAATACATCATCAATGACCTCAACATAAACTCTGTCATCACAACGCCGTGCCATGAGGAAATCTTGCCGATCAATTCTGCTACCACGCAGAGACCTTACACTCTGCGAGGATACGCATATTCTGGCGGCGGGCGAAAAGTTATAAGAGTCGAAATAACGTTCGATGGCGGAGAAACGTGGAAGCTATGTACAGTGAATCGCCCGGAAAAACCCACGAAATACAACAAGCACTGGTGCTGGTGCTTTTGGGAGCTGGATGTCGAAGTCATGGAGCTGTTAGCCGCGAAGGAGATCGCTGTCAGGGCTTGGGATGAAGCCATGAATACGCAGCCCAAGGATCTCACATGGAACGTTATGGGTATGATGAACAACTGCTGGTTCAGGGTGAAGCTAAATGTCTGCAAACCTCATCAAGGCGAAATCGGACTGATGTTCGAGCACCCGACCCGGCCGGGCAACCAGTCCGGAGGCTGGATGCTCCGAGACAAGCAAAATGAAAACAAAGAACAGCAAACCACAGTGAAGAAAACCTTCTCTTCCCCTGTAACGAACCCCGTGTCAAGGCACATCACGCTTTCTGAGGTCCAGAAACACAGCACGGCCGATTCTTGTTGGATTATCGTGCATCATCATGTTTACGACTGTACGAGGTTTCTCAAGGATCACCCGGGCGGAATGGACAGCATTCTCATCAACGCCGGTTTGGATTGCACGGACGAAACCGACGCAATCCACTCAACCAAAGGCAAGGCCATGCTGGAGGACTACAGAATAGGCGAGCTCGTGACGGCGGCCGCGGAGAATGGATCATACTGCCCTTCCCCGTCTCCGTCTCCATCTCCGTCTGCGTCTCCATCCCCGGACAATTCCTTGCATGGCGGATCGAGGGCAATGACAGCCCTGGTGCAGCAGCCCAAGTCGTTGCCCTCGATCAACGAGGTCGCGATTTCGAAACTCGTGGCTCTCAATCCGAAGCAAAAGATCTCCTGCAGGCTCGTCTCGAAGACCCACGTAAGTCGTGACGTAAGATTGTTCAGATTCGCACTTCCGAACCCGGATCAAACACTGGGTCTCCCAACTGGCAAACATATTTTTCTGTCTGCGAACATAAACGGGAAGCTCTGCATCCGGGCTTTCACGCCCGTGAGCTCAGACGACGAAGCAGGATTCTTTGAGCTCCTAATCAAGATCTATTTCAAGAACGTCCACCCCAATTTCCCCCAAGGGGGCCTCATGTCGCAGTACCTGGAGGGCTTGGCTCTGAACAATTCCATAGACGTCAAGGGACCTCTTGGTCACATCCAGTACAGCGGGCGGGGAAATTTCACCATCAATGGAAAGCACAAATCAGCCAAGAAAATCGCAATGCTGGCAGGGGGCACGGGAATTACGCCTCTCTATCAAATCATCAGAGCCATTCTCAAAGATCCCGAGGACGAGACTGAGATGTTTCTTGTATATGCCAACAGAACCGAAGATGACATTCTTCTCCGTGACCAGCTGGACAATTGGGCCAACAACCATTCAAACTTCAAGCTGTGGTATGCCATCAGTAACTCTGTAAGAGATAACTGGAAATACAGCGTTGGTTATGTGGGGGAGGCGATCCTGAAACAACATATTCCTGATGGCTCTTCCGAAGGAACCATTGCTCTACTGTGTGGCCCTCCCCCCATGATCCAAGATGCTTGCCTACCTAACCTGGCCAAAATGAATTATGACATTCAGAATTCGTGTTTTCAGTTCTAA___TTACACCCTTCTGGTTAATCTAATTGGGACATCCCCTCCCACATCCTGTTATTAATTAAGCCGTAGTCTAGTGTATAAAATCTGTTGATGTGTACAGCATAAAGTTAATTTCCTCCTTTTCATTTGCAGAAGCGTTGCTACTCTCAGTATTGAGCACTCCTGATCTCTGTAACTTTTCTGAACCATGTGGACTTTTTCTGATGCAGGGATTTAGGGAATTCAGT

Fln Alignment:

Contig1771___LIRLTGKHPFNSEPPLCQLMKAGFVTPASLHYVRNHGYVPRGNFED-WTVEVSGFVKRPMKFTMRQLLDEFKPRELP-----VTLVCAGNRRKEQNMVKKTIGFNWGAAGVSTSVWRGARLYDVLRRCGIMS----KKKGARYVCFEGAEDLPGGGGCKYATSVSVDIAMDESRDLMLAYLQNGEFLQPDHGFPVRMIIPGFIGGRMVKWLKRIVVTSGESDNFYHFNDNRVLPSHVDADTANSEGWWQKPEYIINDLNINSVITTPCHEEILPINSATTQRPYTLRGYAYSGGGRKVIRVEITFDGGETWKLCTVNRPE-----KPTKYNKHWCWCFWELDVEVMELLAAKEIAVRAWDEAMNTQPK--DLTWNVMGMMNNCWFRVKLN
D5A9R3______________LLKVNAKVPFNAETPRSALIDA-YVTSVDMFYKRNHGPIPVLDDSDRYFVTVGGLVQRHLAISMDDI------RMLPKYTIVATLQCAGNRRTAMSKKRTVKGVGWDIGALGNAVWGGARLSDVLKLAKVPEYTAVTEAGGRHVEFTSVDVCKEENGGPYKASIPLLQATSPEADVLIAYEMNGKVLSRDHGYPLRVVVPGTIGARSVKWLDKIEVNANECQGFFMQKDYKMFPPTVDWDNIK----WPSRRPLM-DFPVNCAICS-----LEDVSSAEWGKKVIIRGYAFSGGGRGIERVDVSVDGGKTWVEARRYQKEGVPYVSDTEDCDKWAWVLFELQTEIH---PPTDIIVKAVDSAANVQPEKVETIWNLRGVLNNSWHVVHVN

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
1762	75			25	0.996473
1763	75			25	0.996473
2296	20		80		0.995493
2308		80		20	0.995493
2552	10			90	0.90298
2640	90		10		0.90298
2644			90	10	0.90298
2648		10		90	0.90298
2650	90			10	0.90298
2651		90	10		0.90298
2654		90		10	0.90298
2657	10			90	0.90298
2746		62	37		1.0
2845	11		88		0.923564
2865	14		85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain