SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1768

Length: 1443 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene1768

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Serine/threonine-protein phosphatase n=1 Tax=Picea sitchensis RepID=D5A9W9_PICSI	-	-	99%
FL-Next	sp=Serine/threonine-protein phosphatase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Sma3	Serine/threonine protein phosphatase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphoprotein phosphatase.	EC:3.1.3.16	-	0.0	-

Source	Gene names
Sma3	46C02.14; AT2G39840; At1g50370; At1g59830; At1g64040; At1g69960; At2g29400; At2g39840; At2g42500; At3g05580; At3g19980; At3g46820; At3g58500; At4g11240; At4g26720; At5g27840; At5g43380; At5g55260; At5g59160; B1051E10.26; B1144B06.13; CHLREDRAFT_132486; CH

Source	GOs	Term	Type	Identity
Sma3	protein phosphatase type 2A complex	GO:0000159	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plastid stroma	GO:0009532	Cellular Component	-
Sma3	phosphoprotein phosphatase activity	GO:0004721	Molecular Function	-
Sma3	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	protein dephosphorylation	GO:0006470	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S16	IPR000307	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	IPR006186	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G19980.1	ATFYPP3, EMB2736, STPP, FYPP3 flower-specific, phytochrome-associated protein phosphatase 3 chr3:6962008-6964761 FORWARD LENGTH=303	86%
RefSeq	Arabidopsis thaliana	NP_188632.1	phytochrome-associated serine/threonine protein phosphatase 3 [Arabidopsis thaliana]	86%
RefSeq	Populus trichocarpa	XP_002310919.1	predicted protein [Populus trichocarpa]	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9W9

Fln msg:

Fln protein: MELDLWLEKVRGGENLTEDELKLLCDYVKEILVEESNVQPVHSPVTVCGDIHGQFHDLMKLFQTGGQVPDTNYIFMGDFVDRGYNSIEVFTILLLLKARYPAHITLLRGNHESRQITQVYGFYDECQRKYGNANAWRFCTDVFDYLTLSAIIDRRVLCVHGGLSPDIRAIDQIRVIDRHCEIPHEGPFCDLMWSDPEDIDTWAVSPRGAGWLFGCRVTSEFNHINDLELVCRAHQLVQEGLKYMFEDKSLVTVWSAPNYCYRCGNVASILSFNENMERDVKFFTETEENNSMMGSRTAGAYFL*

Protein Length: 305

Fln nts: GGGGAACTAAACCGTAGAGACCGAGCCACCCACTCAATTTTCGCCTTCGAACCAAATAATGAAGATGGATCCTCCCATTCAAATTTAAATAGTGAGGGGAGGCCACTTTTAATTTTCTATCTTTATTTTGAACATAAACAGCTGAATAGCACTGAAAAGTCTCCATTTTCATTGATCCTCTGCAATCCGAGAGAAATAGAGATCGATCCGATCTGGAGATTCGAACGCGGGTTGCTGAAAATCTAAATTTCTTTGTGTCCAGTCCTCCGGAATTCAGTAGTG_-_ATGGAGTTGGACCTATGGCTTGAGAAGGTTAGGGGTGGGGAGAACCTCACAGAGGACGAACTCAAGCTTCTGTGCGATTACGTGAAGGAGATACTGGTGGAGGAATCTAATGTACAGCCTGTTCATAGTCCAGTGACAGTGTGTGGAGACATCCATGGACAATTTCATGATCTAATGAAACTTTTCCAGACAGGAGGTCAGGTGCCGGATACAAATTATATATTTATGGGAGATTTTGTCGATAGAGGATACAACAGCATTGAAGTATTCACGATTCTTTTATTATTAAAAGCAAGATATCCAGCTCATATAACTCTTTTGCGTGGGAATCATGAAAGCAGACAGATAACTCAGGTCTATGGATTTTATGATGAATGCCAGCGAAAGTATGGGAATGCAAATGCATGGCGTTTTTGCACTGATGTATTTGATTACCTCACACTGTCAGCAATCATTGATAGACGAGTCCTTTGTGTCCATGGGGGTCTCTCACCTGACATCCGGGCAATCGATCAGATCAGAGTTATTGACAGGCATTGTGAAATACCACATGAAGGACCCTTCTGTGATTTGATGTGGAGTGATCCAGAAGATATTGATACTTGGGCGGTTAGTCCTCGTGGTGCTGGATGGCTTTTTGGGTGCAGAGTAACTTCTGAGTTCAATCACATTAATGACTTGGAACTCGTCTGCCGAGCACATCAACTGGTGCAAGAAGGCCTGAAGTACATGTTTGAAGACAAAAGCTTAGTAACGGTTTGGTCAGCACCAAATTACTGCTACCGATGTGGCAATGTAGCTTCAATTTTGAGCTTTAACGAGAACATGGAAAGGGATGTGAAATTCTTCACTGAAACCGAGGAGAACAATTCTATGATGGGCTCTCGGACTGCCGGTGCATATTTCTTATAG___AAAATCAATAAATTTGGTTGGTGCATTGTATCATTTGTAAACGATGCTGCATTTTTTCACCTGTAGAGGATATAGATGGAAATTTTGCATCCTACTGTATGTTATAAAGCCCGGCAAATTATTGGGATTCTTGATACGAATTCATTAAGTTTTGTGCTACATATAGTTGTTTGATAATGCAGATGTCCATGTTGGATAGATAATTGTGTACAAAGTTTTTTAAAATGCTTAGATTCTCGATTCTTGAGT

Fln Alignment:

Contig1768___MELDLWLEKVRGGENLTEDELKLLCDYVKEILVEESNVQPVHSPVTVCGDIHGQFHDLMKLFQTGGQVPDTNYIFMGDFVDRGYNSIEVFTILLLLKARYPAHITLLRGNHESRQITQVYGFYDECQRKYGNANAWRFCTDVFDYLTLSAIIDRRVLCVHGGLSPDIRAIDQIRVIDRHCEIPHEGPFCDLMWSDPEDIDTWAVSPRGAGWLFGCRVTSEFNHINDLELVCRAHQLVQEGLKYMFEDKSLVTVWSAPNYCYRCGNVASILSFNENMERDVKFFTETEENNSMMGSRTAGAYFL
D5A9W9______________MELDLWLEKVRGGENLTEDELKLLCDYVKEILVEESNVQPVHSPVTVCGDIHGQFHDLMKLFQTGGQVPDTNYIFMGDFVDRGYNSIEVFTILLLLKARYPAHITLLRGNHESRQITQVYGFYDECQRKYGNANAWRFCTDVFDYLTLSAIIDRQVLCVHGGLSPDIRAIDQIRVIDRHCEIPHEGPFCDLMWSDPEDIDTWAVSPRGAGWLFGCRVTSEFNHINDLELVCRAHQLVQEGLKYMFEDKSLVTVWSAPNYCYRCGNVASILSFNENMERDVKFFTETEENNSMMGPRTGGAYFL

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1231	12			87	0.992554
1232		12	87		0.992554
1234	87			12	0.992554
1377	33		66		1.0
1392		14		85	0.993533
1394	20		80		0.995493
1395	80	20			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain