SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1752

Length: 2714 nt

UniGene Fasta

>sp_v3.0_unigene1752
TCGCTTCAGTCACCTGCCGCGTGCGAGACGGATGAGTCGATTACCGCCGCCCCGCGTGGCATGATAGCCATCCGTTTCTAGATTTCTGCAGAGTTTCACCTGTGTCCTTAAAGCGCCGGCGCCTGAGGTATTCCGACAAAAGAAACTGCAGTTCAAGAGGCGTGAAAACCGTCGGATCGGCGCAACATGCTGGAGATTTAAGGCGGGCGGAACGTTTTCTGAACGATGATTGAGGGGTGGAGGCAGGCAAAGGCAAAGGAAAGGATGTTTGTGATGGCTAATGCCAAGAAATCGGCAGACCCACGATGGCGGCGTCTTCTTTACTGCACGCTTTAGTGCTGCAGAGACGCGGGTTCGAGTTCGCCCGCAAGGAGCACGCGGCAGCAGACTTATGGTGGATGAGCACAGAAGATTGGGGAATTGTTAAGAGTACCTAGATGATGAAATCCTTGCGATTCCTGCTTGCGGTCATGCTGGGCGGTGTGCTGCTGTTGATGCTCAGCACCGAGCTTACATACAGAATGGCCGGGGACAATATTGTTAACCGAACGCTGATTCCAACTTTACTTATTTATAAGGACCTGGTGTCGGCCCGCCCAAGCCCCGTGCGACCCGCGGCGGGTTTCATTAACCAGACACTTTATTCCTACGCGTCGATGGAATTAGGCGATCCGGAGGAGCGCGTGCGGATAAATCGGTTGTTGGACGGCAGCATTGGTAGCGGCAGCCGCTCGATCTCGTCGTGGCGCAGGGCAGCAGAGCACGACGACATCCAGCTCCCGCGACCCCGCGGCGCGGCCGGTCAAAGGGAGAGACGGAGGCAGAGACATGGGATCCCATTTCACCTCTTCCACCCGCGGTATACCCCCTACTGGACGGAATTCCGCCTGGTGTTAAAATCTTGGGTTCAGAACAAGCGATTCCAGCCGCGGGTCATGGCGGAGCTCCACGATCTCGTGAAAACCCCCTTGGATCGTCACTACAATACCACGGGGGCTGTGGACATTCGACCTGGGAAACCCTACCGGAGCTGCGCCGTGGTCGGTAACAGCGGTATCCTGCTTCAGAAAACCCAAGGACCGCTGATCGATTCCCATGAAATGGTAATCCGACTCAACAACGCCCGCACCGGGGGTTTCCAAAACAGCGTGGGCTCCAAAACCACTCTTGCATTCGTTAACAGCAATATTCTCCATTCCTGTGCCAGAAGAACCGGGTGCTTCTGCCATCCATACGGGGAAACCGTTCCAATTATTATGTACATCTGCCAGGCCGTGCATTTGATGGATTTTGCCCTCTGCAATGCATCCCACAAGGCGCCCCTGCTCGTCACAGACGCCCGATTCGATAACCTCTGTGGCAGAGTAGTGAAGTATTATTCTCTCAAGAATTTTGTAGAGACCACCGGTAAGCATCCGGAGCAATGGAGCGCGGCGCACGATGGTTCAATGTTCCATTACTCGTCTGGAATGCAGGCGGTGATGGTCGCACTGGGGATTTGCGAGAAGGTAAGTATCTTCGGCTTCGGTAAATCTTCTCAGGCTAAGCACCATTACCACACAAATCAGAAAGGCGAGCTAACGCTTCATGATTATGAGGCTGAGTATCATTTTTATAAAGATTTGGCTAATGGGTCGCAGCATATACCTTTCTTAAACGAGGCCGGCATCGATCTTCCTCCGGTGCAGATCTATTTATGAGGTTCCTTCTCTCTGTCTTTTCTTTTTTTAATCTTCTGTGGGCTTTGCGATTCTTGGATTCTTTTAAAGTGTGCACTATTCATTGTGTTTCTTCTCTTATTGTAAACTTGATGCCAGAAAAAGTGATGATCAATTGTAAGAAACCTGATTATGTACAAAAATTGGTTTCCACATCATTCGTTTACTCTGGAGTTTCTGAATGCATGGATGTATAGTTTTGCAATGATGCATTTCATGTCAAGTAGAACCAGTATACCAAACCCCTTTTGCACATGTAAAAGTTTGAATGGTTGCATCTTCAATATGTGGGCCGTTGGTATCTTGGCGAAGTCAAGTCTGCTCATTTGGTTTTGATCTCGCAAAGCCCGGGACTCGAACCTAACTCTTTCCATATAAGGCACCTATGCCTTCTCCATGGCGTGGAGATTCCACAGCGGCTTCTTATGAATTTTCAATGACCACGGCATATCCATCGACATCTTTGTTCTTGTTGTGGTCTGGACACTCCCCAGATCACTCCTAGTTGTCCTGGTAACCTGGGCATTTTCCAAATCACTGCATCCAAAAGGATCAAACAAATTTAACTCAGAAGGTGGGGCTGGAGGTGGTGAATAGGGTAAGCCCGTTGGCCACCTTTCTGCGCCCTGAAGAGAGGGCAAGCCTAATGAAGAGTGAGTTGTGACAAGGTGTTCCAATTATTGTCATTGGAAAGGCCTAAGCGTGTAAAGTACAAGCTTTAAAGTGGGTTTGGGGGGTTGATAAAGGGTAAAAACCCATCAACCCGCCTCACGCTCTGAAGAGGGGGCATGAAGAATGAGTTGTGGCAAGGTGCTTTAATTGTTGGCATAATCTAAGCATGTAAATGACGAGTTGTAAGATGATCTCGCTAATCTGGTATTGTTAATTCTTTTCTCTAATGTATTCTCTCACCAATCGCGTCAATGCTTTTGCTGTTGTGCAGTGATTATCTGCTTATGTTATGATCTTTGAAATGCCATTCATTGTTGTTGCTAT

Ace file of the UniGene sp_v3.0_unigene1752

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Sialyltransferase-like protein n=2 Tax=Picea RepID=Q4JEY7_PICGL	-	-	79%
FL-Next	tr=Sialyltransferase-like protein; Picea glauca (White spruce) (Pinus glauca).	-	-	89%
Sma3	Sialyltransferase-like protein	-	-	-

Source	Gene names
Sma3	stv1;

Source	GOs	Term	Type	Identity
Sma3	integral to Golgi membrane	GO:0030173	Cellular Component	-
Sma3	sialyltransferase activity	GO:0008373	Molecular Function	-
Sma3	protein glycosylation	GO:0006486	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycosyl transferase, family 29	IPR001675	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Sialyltransferase	IPR012163	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G08280.1	Glycosyltransferase family 29 (sialyltransferase) family protein chr1:2608408-2609604 FORWARD LENGTH=398	58%
RefSeq	Arabidopsis thaliana	NP_172305.1	glycosyl transferase-like 29 protein [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002306228.1	predicted protein [Populus trichocarpa]	53%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q4JEY7

Fln msg:

Fln protein: MMKSLRFLLAVMLGGVLLLMLSTELTYRMAGDNIVNRTLIPTLLIYKDLVSARPSPVRPAAGFINQTLYSYASMELGDPEERVRINRLLDGSIGSGSRSISSWRRAAEHDDIQLPRPRGAAGQRERRRQRHGIPFHLFHPRYTPYWTEFRLVLKSWVQNKRFQPRVMAELHDLVKTPLDRHYNTTGAVDIRPGKPYRSCAVVGNSGILLQKTQGPLIDSHEMVIRLNNARTGGFQNSVGSKTTLAFVNSNILHSCARRTGCFCHPYGETVPIIMYICQAVHLMDFALCNASHKAPLLVTDARFDNLCGRVVKYYSLKNFVETTGKHPEQWSAAHDGSMFHYSSGMQAVMVALGICEKVSIFGFGKSSQAKHHYHTNQKGELTLHDYEAEYHFYKDLANGSQHIPFLNEAGIDLPPVQIYL*

Protein Length: 422

Fln nts: TCGCTTCAGTCACCTGCCGCGTGCGAGACGGATGAGTCGATTACCGCCGCCCCGCGTGGCATGATAGCCATCCGTTTCTAGATTTCTGCAGAGTTTCACCTGTGTCCTTAAAGCGCCGGCGCCTGAGGTATTCCGACAAAAGAAACTGCAGTTCAAGAGGCGTGAAAACCGTCGGATCGGCGCAACATGCTGGAGATTTAAGGCGGGCGGAACGTTTTCTGAACGATGATTGAGGGGTGGAGGCAGGCAAAGGCAAAGGAAAGGATGTTTGTGATGGCTAATGCCAAGAAATCGGCAGACCCACGATGGCGGCGTCTTCTTTACTGCACGCTTTAGTGCTGCAGAGACGCGGGTTCGAGTTCGCCCGCAAGGAGCACGCGGCAGCAGACTTATGGTGGATGAGCACAGAAGATTGGGGAATTGTTAAGAGTACCTAG_-_ATGATGAAATCCTTGCGATTCCTGCTTGCGGTCATGCTGGGCGGTGTGCTGCTGTTGATGCTCAGCACCGAGCTTACATACAGAATGGCCGGGGACAATATTGTTAACCGAACGCTGATTCCAACTTTACTTATTTATAAGGACCTGGTGTCGGCCCGCCCAAGCCCCGTGCGACCCGCGGCGGGTTTCATTAACCAGACACTTTATTCCTACGCGTCGATGGAATTAGGCGATCCGGAGGAGCGCGTGCGGATAAATCGGTTGTTGGACGGCAGCATTGGTAGCGGCAGCCGCTCGATCTCGTCGTGGCGCAGGGCAGCAGAGCACGACGACATCCAGCTCCCGCGACCCCGCGGCGCGGCCGGTCAAAGGGAGAGACGGAGGCAGAGACATGGGATCCCATTTCACCTCTTCCACCCGCGGTATACCCCCTACTGGACGGAATTCCGCCTGGTGTTAAAATCTTGGGTTCAGAACAAGCGATTCCAGCCGCGGGTCATGGCGGAGCTCCACGATCTCGTGAAAACCCCCTTGGATCGTCACTACAATACCACGGGGGCTGTGGACATTCGACCTGGGAAACCCTACCGGAGCTGCGCCGTGGTCGGTAACAGCGGTATCCTGCTTCAGAAAACCCAAGGACCGCTGATCGATTCCCATGAAATGGTAATCCGACTCAACAACGCCCGCACCGGGGGTTTCCAAAACAGCGTGGGCTCCAAAACCACTCTTGCATTCGTTAACAGCAATATTCTCCATTCCTGTGCCAGAAGAACCGGGTGCTTCTGCCATCCATACGGGGAAACCGTTCCAATTATTATGTACATCTGCCAGGCCGTGCATTTGATGGATTTTGCCCTCTGCAATGCATCCCACAAGGCGCCCCTGCTCGTCACAGACGCCCGATTCGATAACCTCTGTGGCAGAGTAGTGAAGTATTATTCTCTCAAGAATTTTGTAGAGACCACCGGTAAGCATCCGGAGCAATGGAGCGCGGCGCACGATGGTTCAATGTTCCATTACTCGTCTGGAATGCAGGCGGTGATGGTCGCACTGGGGATTTGCGAGAAGGTAAGTATCTTCGGCTTCGGTAAATCTTCTCAGGCTAAGCACCATTACCACACAAATCAGAAAGGCGAGCTAACGCTTCATGATTATGAGGCTGAGTATCATTTTTATAAAGATTTGGCTAATGGGTCGCAGCATATACCTTTCTTAAACGAGGCCGGCATCGATCTTCCTCCGGTGCAGATCTATTTATGA___GGTTCCTTCTCTCTGTCTTTTCTTTTTTTAATCTTCTGTGGGCTTTGCGATTCTTGGATTCTTTTAAAGTGTGCACTATTCATTGTGTTTCTTCTCTTATTGTAAACTTGATGCCAGAAAAAGTGATGATCAATTGTAAGAAACCTGATTATGTACAAAAATTGGTTTCCACATCATTCGTTTACTCTGGAGTTTCTGAATGCATGGATGTATAGTTTTGCAATGATGCATTTCATGTCAAGTAGAACCAGTATACCAAACCCCTTTTGCACATGTAAAAGTTTGAATGGTTGCATCTTCAATATGTGGGCCGTTGGTATCTTGGCGAAGTCAAGTCTGCTCATTTGGTTTTGATCTCGCAAAGCCCGGGACTCGAACCTAACTCTTTCCATATAAGGCACCTATGCCTTCTCCATGGCGTGGAGATTCCACAGCGGCTTCTTATGAATTTTCAATGACCACGGCATATCCATCGACATCTTTGTTCTTGTTGTGGTCTGGACACTCCCCAGATCACTCCTAGTTGTCCTGGTAACCTGGGCATTTTCCAAATCACTGCATCCAAAAGGATCAAACAAATTTAACTCAGAAGGTGGGGCTGGAGGTGGTGAATAGGGTAAGCCCGTTGGCCACCTTTCTGCGCCCTGAAGAGAGGGCAAGCCTAATGAAGAGTGAGTTGTGACAAGGTGTTCCAATTATTGTCATTGGAAAGGCCTAAGCGTGTAAAGTACAAGCTTTAAAGTGGGTTTGGGGGGTTGATAAAGGGTAAAAACCCATCAACCCGCCTCACGCTCTGAAGAGGGGGCATGAAGAATGAGTTGTGGCAAGGTGCTTTAATTGTTGGCATAATCTAAGCATGTAAATGACGAGTTGTAAGATGATCTCGCTAATCTGGTATTGTTAATTCTTTTCTCTAATGTATTCTCTCACCAATCGCGTCAATGCTTTTGCTGTTGTGCAGTGATTATCTGCTTATGTTATGATCTTTGAAATGCCATTCATTGTTGTTGCTAT

Fln Alignment:

Contig1752___MMKSLRFXXXXXXXXXXXXXXSTELTYRMAGDNIVNRTLIPTLLIYKDLVSARPSPVRPAAGFINQTLYSYASMELGDPEERVRINRLLDXXXXXXXXXXXXXXXAAEHDDI-QLXXXXXXXXXXXXXXXXHGIPFHLFHPRYTPYWTEFRLVLKSWVQNKRFQPRVMAELHDLVKTPLDRHYNTTGAVDIRPGKPYRSCAVVGNSGILLQKTQGPLIDSHEMVIRLNNARTGGFQNSVGSKTTLAFVNSNILHSCARRTGCFCHPYGETVPIIMYICQAVHLMDFALCNASHKAPLLVTDARFDNLCGRVVKYYSLKNFVETTGKHPEQWSAAHDGSMFHYSSGMQAVMVALGICEKVSIFGFGKSSQAKHHYHTNQKGELTLHDYEAEYHFYKDLANGSQHIPFLNEAGIDLPPVQIYL
Q4JEY7______________MMKSLQFLAAVMLGAVLLLTLSTELTYRMAVHSIVNRTLIPTLLIYKDLVSARPSHRRPAVSSINQTLLRYAEIELGDPEERQRINRLLDGSIGSGSRSISSWRRAIEHDDLLQLPRPRGAASQRERQRQRHGIPFHLFHPRYTPYWTEFRRVLKYWVQNKRFHPRVMAELGDLVKTPLDRHYNATRTVNIRPGQPYRSCAVVGNSGILLQKTQGPLIDSHEMVIRLNNARIGGFQNNVGSKTTLAFVNSNILHSCARRAGCFCHPYGETVPIMMYICQAVHFMDFALCNASHKVPLLVTDARFDNLCGRVVKYYSLKNFVETTGKHPEQWSAAHDGSMFHYSSGMQAVMLALGICEKVSLFGFGKSPQAKHHYHTNQKGELTLHDYEAEYQFYKDLANGSLDIPFLSEVGIDLPPLQIYL

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1993		50	50		1.0
2069		62		37	1.0
2146			33	66	1.0
2325	22		77		0.999999
2387	90		9		0.999842
2489	20	80			0.995493
2491	20		80		0.995493
2492		80		20	0.995493
2493		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain