SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1733

Length: 2118 nt

UniGene Fasta

>sp_v3.0_unigene1733
GCGGGGAGATTCTTAGTAAGTGTTAGTGTAGAGAACGATACACTAAATCCCAAGTTAAGAGCTCTTTTATGCAGAATATTCATTGAAGGCATTGTTTGCTTCCTCTGATCTACACAGCCGAAGGTTTCTAGCAGGTTGAGTTGAGTGTCTAAATTGCTGTATACTACCATTCAGGCAACAGTTGGAAATGGCAACCCCTCTAGAATCTGTGCAGGAACAAAAAGACATAATTGGAATGCCTAGAAATGCTAATCCTGGTCAGAAAAGGGGAAGAGAAGAAGAGATGGGAACTGGAACAGGTGGTGATAAAAAGTGGCCCGGATGGCCTGGAGAGAATGTTTTTCGATTGCTTGTTCCAAGTCAGAAGGTTGGTGGCATAATAGGTCGGAAGGGTGAATTTGTCAAGAAAATGTGCGAGGAGACCAGATCTCGTATTAAGATTCTCGATGGACTTTCAGGCACCCCTGAGCGTGTTGTCATGGTGTCTGCAAAGGAAGAACCTGATTCAACAATTTCTCCAGCAATGGATGGGATCCTTAAAGTTCATAAGCGAATTATTGAAGGTATAGATGAAGTAGGTCGAACTCAACAAGCTGGGGGTGCACCAATAATAACTCGCTTGCTACTAGCAGGCATACAGTCTGGAAGTTTAATTGGTAAGCAAGGCGCAACAATAAAGTCTATTCAGGAAAACTCAGGTGCTGCTGCTCGAGTAGTTGGTGCTGAGGATATCCCATATTGTGCTTTAGCAGATGACAAAGTTCTTGAGATACAAGGAGAGCCTGCAAATGTACACAAGGCCCTTGAGCTAGTTGTTTCTCACCTGAGAAAATTCTTGGTTGACCGCAGCGTTCTTCCTTTGTTCGAAATGAATGTGTCAAAGGCAAATCAGTCTCAGATGGAGCAGAACCTGCCCCACCAGCCATGGAGTCATAACCAAACCAGTTCATTACCTAATAGTGGCAGTGCTTTTGGAAATAACTCCAAATACACACCCACTGCTCCTCCACATGATAATTATTATGCGCCGTCAGACCTTCCTCCAGAAACTCACTCCCACCATGGTTTAAACATGTATGGCAGAGATCCCCTTGGTGGTCATTCAGTGCCAAATGCGGCACCGGCACCTGTTATCACACAGGTTTCTCAGCGGATGCAAATTCCTTTATCATATGCTGATGCCGTGATTGGGACAAATGGTGCAAATATCAGTTATTGTCGAAGAAATAGTGGAGCAATTATAACCATTGAAGAAACTAGAGGAGTTCCTGGGGAAATGACAGTTGAAATTCATGGAACTGCTTCTCAAGTGCAGACGGCACAGCAGTTGATCCAGAACTTTATGGCTGGGGCTTCAGGACCACCAGCAGATGTGTACAGGGCTTCAGGACCTCCAGCTGACGTATATCGAGGTTCAGGACCTCCAGCTGATGTATATCGAGGTTCAGGACCTCCAGCAGATGTGTATCGAGGTTCAGGACCTCCAGCAGATGTGTATCGGGGTTCAGGACCACCAGATGTGTACAATTCTATTGATTCAGGCTATAATTCATATTCAGGGCATAATACCATGTATCCTTCCCCACGATCGAATACTGGATTTGCTGGTCACTCTGCTGGAGGTTACGAGTCCAACTATAACAACAGCTACCGCTATTAGATGAACTTTCTTATGCTCTGGTATTCTACGCTTCTGTTTATACTACTGAGATTTTTTTTATGTGGAACCAACGTTGATGTGATTAATGCTAATTTTTAAGCTGTGGCTGAGACATTACCTGAGGCTTGCTACCAGTGCAGAACAACTGCAATCTGTGAAATTTTGCAAAAAACGTGTGTTTATAGGTGAAGTCCACATTTTCATAACATGGCTTTGAAATGAGACGGGGCTTATCTTGGCATGTTTAGAAGTTAGAACTTAAATTTCTTTTTTCCATTGTATGTTATGACATGCAAAGCTTTCTGGATACATTATGGAATTAGACTTGGTGCTTATAGAACTGAGGCTTAGTGAATGCAGACATCTTTATATCTTTGTTACTGATTGAAGTTTATTAACATTGTTCTGTACCATGTTCATTTTCATTGTTATTCAGTTACGATTGCTACTATAGCTTT

Ace file of the UniGene sp_v3.0_unigene1733

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative RNA binding protein [Oryza sativa Japonica Group] gb\|ABF97724.1\| KH domain containing protein, expressed [Oryza sativa Japonica Group] dbj\|BAG90551.1\| unnamed protein product [Oryza sativa Japonica Group] gb\|EEE59537.1\| hypothetical protein OsJ_1	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	K Homology domain	IPR004087	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3		IPR018111	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G04610.1	FLK RNA-binding KH domain-containing protein chr3:1250762-1254272 REVERSE LENGTH=577	53%
RefSeq	Arabidopsis thaliana	NP_187112.1	RNA-binding KH domain-containing protein [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002319087.1	predicted protein [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LM14

Fln msg:

Fln protein: MATPLESVQEQKDIIGMPRNANPGQKRGREEEMGTGTGGDKKWPGWPGENVFRLLVPSQKVGGIIGRKGEFVKKMCEETRSRIKILDGLSGTPERVVMVSAKEEPDSTISPAMDGILKVHKRIIEGIDEVGRTQQAGGAPIITRLLLAGIQSGSLIGKQGATIKSIQENSGAAARVVGAEDIPYCALADDKVLEIQGEPANVHKALELVVSHLRKFLVDRSVLPLFEMNVSKANQSQMEQNLPHQPWSHNQTSSLPNSGSAFGNNSKYTPTAPPHDNYYAPSDLPPETHSHHGLNMYGRDPLGGHSVPNAAPAPVITQVSQRMQIPLSYADAVIGTNGANISYCRRNSGAIITIEETRGVPGEMTVEIHGTASQVQTAQQLIQNFMAGASGPPADVYRASGPPADVYRGSGPPADVYRGSGPPADVYRGSGPPADVYRGSGPPDVYNSIDSGYNSYSGHNTMYPSPRSNTGFAGHSAGGYESNYNNSYRY*

Protein Length: 492

Fln nts: GCGGGGAGATTCTTAGTAAGTGTTAGTGTAGAGAACGATACACTAAATCCCAAGTTAAGAGCTCTTTTATGCAGAATATTCATTGAAGGCATTGTTTGCTTCCTCTGATCTACACAGCCGAAGGTTTCTAGCAGGTTGAGTTGAGTGTCTAAATTGCTGTATACTACCATTCAGGCAACAGTTGGAA_-_ATGGCAACCCCTCTAGAATCTGTGCAGGAACAAAAAGACATAATTGGAATGCCTAGAAATGCTAATCCTGGTCAGAAAAGGGGAAGAGAAGAAGAGATGGGAACTGGAACAGGTGGTGATAAAAAGTGGCCCGGATGGCCTGGAGAGAATGTTTTTCGATTGCTTGTTCCAAGTCAGAAGGTTGGTGGCATAATAGGTCGGAAGGGTGAATTTGTCAAGAAAATGTGCGAGGAGACCAGATCTCGTATTAAGATTCTCGATGGACTTTCAGGCACCCCTGAGCGTGTTGTCATGGTGTCTGCAAAGGAAGAACCTGATTCAACAATTTCTCCAGCAATGGATGGGATCCTTAAAGTTCATAAGCGAATTATTGAAGGTATAGATGAAGTAGGTCGAACTCAACAAGCTGGGGGTGCACCAATAATAACTCGCTTGCTACTAGCAGGCATACAGTCTGGAAGTTTAATTGGTAAGCAAGGCGCAACAATAAAGTCTATTCAGGAAAACTCAGGTGCTGCTGCTCGAGTAGTTGGTGCTGAGGATATCCCATATTGTGCTTTAGCAGATGACAAAGTTCTTGAGATACAAGGAGAGCCTGCAAATGTACACAAGGCCCTTGAGCTAGTTGTTTCTCACCTGAGAAAATTCTTGGTTGACCGCAGCGTTCTTCCTTTGTTCGAAATGAATGTGTCAAAGGCAAATCAGTCTCAGATGGAGCAGAACCTGCCCCACCAGCCATGGAGTCATAACCAAACCAGTTCATTACCTAATAGTGGCAGTGCTTTTGGAAATAACTCCAAATACACACCCACTGCTCCTCCACATGATAATTATTATGCGCCGTCAGACCTTCCTCCAGAAACTCACTCCCACCATGGTTTAAACATGTATGGCAGAGATCCCCTTGGTGGTCATTCAGTGCCAAATGCGGCACCGGCACCTGTTATCACACAGGTTTCTCAGCGGATGCAAATTCCTTTATCATATGCTGATGCCGTGATTGGGACAAATGGTGCAAATATCAGTTATTGTCGAAGAAATAGTGGAGCAATTATAACCATTGAAGAAACTAGAGGAGTTCCTGGGGAAATGACAGTTGAAATTCATGGAACTGCTTCTCAAGTGCAGACGGCACAGCAGTTGATCCAGAACTTTATGGCTGGGGCTTCAGGACCACCAGCAGATGTGTACAGGGCTTCAGGACCTCCAGCTGACGTATATCGAGGTTCAGGACCTCCAGCTGATGTATATCGAGGTTCAGGACCTCCAGCAGATGTGTATCGAGGTTCAGGACCTCCAGCAGATGTGTATCGGGGTTCAGGACCACCAGATGTGTACAATTCTATTGATTCAGGCTATAATTCATATTCAGGGCATAATACCATGTATCCTTCCCCACGATCGAATACTGGATTTGCTGGTCACTCTGCTGGAGGTTACGAGTCCAACTATAACAACAGCTACCGCTATTAG___ATGAACTTTCTTATGCTCTGGTATTCTACGCTTCTGTTTATACTACTGAGATTTTTTTTATGTGGAACCAACGTTGATGTGATTAATGCTAATTTTTAAGCTGTGGCTGAGACATTACCTGAGGCTTGCTACCAGTGCAGAACAACTGCAATCTGTGAAATTTTGCAAAAAACGTGTGTTTATAGGTGAAGTCCACATTTTCATAACATGGCTTTGAAATGAGACGGGGCTTATCTTGGCATGTTTAGAAGTTAGAACTTAAATTTCTTTTTTCCATTGTATGTTATGACATGCAAAGCTTTCTGGATACATTATGGAATTAGACTTGGTGCTTATAGAACTGAGGCTTAGTGAATGCAGACATCTTTATATCTTTGTTACTGATTGAAGTTTATTAACATTGTTCTGTACCATGTTCATTTTCATTGTTATTCAGTTACGATTGCTACTATAGCTTT

Fln Alignment:

Contig1733___MATPLESVQEQKDIIGMPRNANPGQKXXXXXXXXXXXXXDKKWPGWPGENVFRLLVPSQKVGGIIGRKGEFVKKMCEETRSRIKILDGLSGTPERVVMVSAKEEPDSTISPAMDGILKVHKRIIEGIDEVGRTQQAGGAPIITRLLLAGIQSGSLIGKQGATIKSIQENSGAAARVVGAEDIPYCALADDKVLEIQGEPANVHKALELVVSHLRKFLVDRSVLPLFEMNVSKANQSQMEQNLPHQPWSHNQTSSLPNSGSAFGNNSKYTPTAPPHDNYYAPSDLPPETHSHHGLNMYGRDPLGGHSVPNAAPAPVITQVSQRMQIPLSYADAVIGTNGANISYCRRNSGAIITIEETRGVPGEMTVEIHGTASQVQTAQQLIQNFMAGASGPPADVYRASGPPADVYRGSGPPADVYRGSGPPADVYRGSGPPADVYRGSGPPDVYNSIDSGYNSYSGHNTMYPSPRSNTGFAGHSAGG
B8LM14______________MAAPLESVQEQKDLIGIPRNANPGQKRGREEEIGTGTGAEKKWPGWPGENVFRMLVPSQKVGGIIGRKGEFVKKMCEETRSRIKILDGLSGTPERVVMVSAKEEPDATISPAMDGILKVHKRIIEGIDEVGRTQQAAGGPTITRLLLAGIQSGSLIGKQGATIKSIQENSGVAAKVVGSEDIPYCALADDKVLEIQGEPANVHKALELVVSHLRKFLVDRSVLPMYEMNMSKTNQSQMEQNLSHQPWSHNQTSSLPNSGSGFGNNSKYTPTAPPHDNYYAPSDLPPETHSHHGLNMYGRDPLGGHSVPNAAPAPVITQVSQRMQIPLSYADAVIGTNGANISYCRRNSGAIITIEETRGVPGEMTVEIHGTASQVQTAQQLIQNFMAGASGPPADVYRASGPPADVYRTSGPPADVYRASGPPADVYRASGPPADVYRASGPPDVYNSIDSGYNSYSGHNTMYTSPRSNTGFAGHSAGG

SNPs (tot: 3)

Position	A %	C %	T %	Probability
212		85	14	0.993533
1711	86		13	1.0
2018		81	18	0.999994

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain