SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1714

Length: 1912 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene1714

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MBOAT (Membrane bound O-acyl transferase)-like protein n=2 Tax=Arabidopsis RepID=Q8RY80_ARATH	-	-	0.0	56%
FL-Next	tr=Glycerol uptake protein, putative; Ricinus communis (Castor bean).	-	-	0.0	58%
Sma3	Chromosome undetermined scaffold_631, whole genome shotgun sequence	-	-	9.576e-10	-

Source	Gene names
Sma3	At1g57600; GSVIVT00004222001; GSVIVT00004223001; GSVIVT00010013001; GSVIVT00010096001; GSVIVT00012071001; OJ1607_F09.6; Os05g0144000; OsI_18427; OsJ_17087; PHYPADRAFT_63722; POPTRDRAFT_823553; RCOM_1437100; T8L23.7;

Source	GOs	Term	Type	e value	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	WW/Rsp5/WWP	IPR001202	-	0.0	-
Sma3	Membrane bound O-acyl transferase, MBOAT	IPR004299	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G57600.1	MBOAT (membrane bound O-acyl transferase) family protein chr1:21330729-21334596 REVERSE LENGTH=533	58%
RefSeq	Arabidopsis thaliana	NP_176073.2	MBOAT (membrane bound O-acyl transferase)-like protein [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002318916.1	membrane bound o-acyl transferase [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: B9RFS4

Fln msg: W2: There is no M at the beginning,

Fln protein: CLSSGINAEYAGWRQLELALLLIYAAIFYIIVIHRSLHLSREYVVGSNVGRLRGLRQGWIGLRFNDMSDSQWRNFRGNLPILTLVLGIFMLLVNTMRTRFHFHGRGLSVLWILLSLAYIIYLHGACTLFILAIAFGNFFLTKKYGKIHIFPIIIWVYNVVVLICNRIYDGYSFSLFGQNFAFLDNYRGTFRWHICFNFVMLRMLSFGLDYHWAHGSPKLDWKRHIQNCELCASGKSCYHARQERSLPLESYSFERYLCYLFYAPLYIAGPIISFNAFSSQLDSPQNSQSKLRITWYGIRWIVCLCLIELMTHFCHYNSLAISGIWEQFTAWDIFVVGYGVLNFMWLKFLLIWRYFRLWALIGGIETPENMPRCVNNCYDLEGFWKSWHASYNRWLVRYLYIPLGGSHTKMFNVWIIFTFVAIWHDLEWKLLSWALVTCVFWMPEILCKSMTRMPEVKTLLSEAFLRELGAFGGAITISFLMMANLIGFVVGPTRMQWLISRMLLRENVSVLIGIFTSFYVGTKLMFHVREVEALKNSK*

Protein Length: 540

Fln nts: ACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGTGGAGGCAACTGGAGCTGGCCCTGCTACTAATATACGCTGCAATTTTTTATATAATTGTCATACACCGCTCGCTGCACTTGTCAAGAGAATATGTAGTTGGGTCCAATGTCGGAAGGCTGAGAGGATTGAGGCAAGGCTGGATTGGGCTTCGCTTCAATGACATGTCAGATAGTCAATGGCGAAATTTCCGTGGAAACTTACCAATTCTGACACTGGTGTTGGGCATATTTATGTTATTGGTAAATACTATGAGAACAAGATTCCATTTCCATGGGAGGGGCTTGTCAGTGCTCTGGATATTGCTCTCACTTGCCTATATAATATATTTGCATGGTGCCTGTACTCTTTTCATTCTTGCAATCGCATTTGGAAACTTCTTTCTTACAAAGAAATATGGCAAGATACACATATTTCCCATCATTATATGGGTGTACAATGTTGTGGTGCTTATTTGCAATCGTATCTACGATGGATATTCTTTTTCATTGTTTGGGCAAAATTTTGCATTCTTGGACAACTATCGAGGCACATTCAGATGGCATATCTGCTTTAATTTCGTGATGTTACGGATGCTGAGCTTTGGCCTCGACTACCATTGGGCTCATGGATCTCCTAAATTGGATTGGAAGAGGCACATACAAAACTGTGAACTCTGTGCTTCTGGAAAATCATGCTATCATGCACGGCAGGAAAGGAGCTTGCCCCTTGAGAGCTATTCATTTGAGAGATATCTTTGTTATCTGTTTTATGCACCTTTGTATATTGCTGGACCAATTATAAGTTTTAATGCTTTCTCGTCACAGTTGGATTCTCCACAAAATTCTCAAAGCAAACTCAGGATTACATGGTATGGAATTCGATGGATTGTTTGTCTATGTTTGATTGAGTTAATGACTCATTTTTGCCACTACAACTCTCTAGCTATCAGTGGTATCTGGGAGCAATTTACAGCATGGGATATCTTCGTTGTAGGTTATGGGGTGTTGAACTTCATGTGGTTAAAGTTCCTGCTTATCTGGAGGTATTTCCGGTTGTGGGCTTTGATTGGAGGTATTGAAACCCCTGAGAACATGCCTCGGTGTGTCAACAATTGTTATGACCTTGAAGGCTTTTGGAAAAGTTGGCATGCATCTTACAATAGATGGCTTGTAAGGTACTTGTACATTCCTCTTGGGGGGTCACATACAAAAATGTTCAATGTTTGGATAATTTTTACATTTGTGGCCATATGGCATGACTTGGAGTGGAAGCTTTTGTCTTGGGCTTTGGTGACTTGTGTATTCTGGATGCCAGAAATCTTATGCAAGTCAATGACGCGCATGCCCGAGGTCAAGACTTTGCTAAGTGAGGCCTTTCTTCGAGAATTGGGAGCATTTGGTGGTGCTATTACTATATCTTTCCTTATGATGGCAAACTTGATTGGATTTGTTGTTGGACCAACGCGCATGCAGTGGTTGATTTCAAGGATGCTTCTAAGAGAGAATGTATCTGTGCTTATTGGTATTTTTACATCGTTCTATGTTGGAACAAAACTTATGTTTCATGTACGGGAGGTTGAAGCTCTTAAGAATTCAAAATAG___TCGGAAATTTGATTTGGTTTTTGATAGACCATTATTTTGTTGCATTTTGTTATAGTTCAACTATGGTTTCTTTTGAATTCAATCGATATTGTTATTGTAAGCTATAAAATATTGGCTGTAAACCTCAGCGTGGTATTGCACATTCCAAAATGGTATCCCTAAGGGAAAGGATGGTTTTTATTTTGTAACATAATAAAACTTTTAAATTTAAATAGAAACAAGGCTCTTGTAGCTAGAACATTTGTTTAATAAGCTGGAGATTGAGCTTGCTTCCAAAAAAAAAAAAAAAAAAC

Fln Alignment:

Contig1714___HRSLHLSREYVVGSNVGRLRGLRQGWI-GLRFNDMSDSQWRNFRGNLPILTLVLGIFMLLVNTMRTRFHFHGRGLSVLWILLSLAYIIYLHGACTLFILAIAFGNFFLTKKYGKIHIFPIIIWVYNVVVLICNRIYDGYSFSLFGQNFAFLDNYRGTFRWHICFNFVMLRMLSFGLDYHWAHGSPKLDWKRHIQNCELCASGKSCYHARQERSLPLESYSFERYLCYLFYAPLYIAGPIISFNAFSSQLDSPQNSQSKLRITWYGIRWIVCLCLIELMTHFCHYNSLAISGIWEQFTAWDIFVVGYGVLNFMWLKFLLIWRYFRLWALIGGIETPENMPRCVNNCYDLEGFWKSWHASYNRWLVRYLYIPLGGSHTKMFNVWIIFTFVAIWHDLEWKLLSWALVTCVFWMPEILCKSMTRMPEVKTLLSEAFLRELGAFGGAITISFLMMANLIGFVVGPTRMQWLISRMLLRENVSVLIGIFTSFYVGTKLMFHVREVEALKN
B9RFS4______________HRSLHLSHDHK-----SKLYGLRNGWLLPPRLNDGSDAQWRNFRVNLPILTVVFGMFSVLANSFRAFFYLKAKGMSIVWLFISLAYLLYLHGACTLFILLIASANFVLVKVFAQTNYFSFLLWVFNIFFLLCNRVYEGYSFSIFGQRLAFLDNFRGTFRWHICFNFVILRMISFGYDYHWANQDSRFDQKKHIQRCHVCKSGKTCYQFLQERSTPNVNFSFSIYLSYLVYAPLYIAGPIMSFNAYASQLDMPQKNYAARDVFWYGSRWIFSFLLMELFTHLFHYNAFAISGLWKLLSPMDIFIIGYGVLNFMWLKFYLIWRYFRFWSLICGVEAPENMPRCINNCYNLETFWKNWHASYNKWLVRYMYIPLGGTQRKLLNIWVIFTFVAVWHDLEWKLISWAWLTCLFFIPEMLVKSVANGMQAENAFGEFLFRELRAVAGAITITCLMVANLVGYVIGPSGINWLISQFLTRKGLPVFGGMFITFYVGTKLMFHIDDAKQRKH

SNPs (tot: 5)

Position	C %	G %	T %	Probability
1301		80	20	0.995493
1366	40	60		1.0
1437	20		80	0.995493
1562	12		87	0.992554
1855		20	80	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain