SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1702

Length: 2083 nt

UniGene Fasta

>sp_v3.0_unigene1702
GATCTCGGTGGAAACAAACTTTTTCTGAGACTTCAATTTTGAGCTAGGCTTGATTCGGCAGCATACACATACATATAACAAGAAAGGATATCTAATCGATATAAACTTTGTCGATCGTCTCCGCATCGTCCTCGTTTCCACCCGTTCTCTCTACTTCAAACGAATTTCCAACGCCCTTCAAATTTCCCTCTTTTTTTCTCATCTCGTCGACAAGGACTAGGAGCAGAGGTCGAATCCTGTAATCCCCAACGGAGCGTAACTAACAGAGCAAGGAGGAATCATGCCTAGGGAGATAATCACCTTACAGGTGGGGCAATGTGGCAATCAGATCGGTATGGAGTTCTGGAAGCAGCTCTGCCTGGAGCACGGCATCAGCAAAGAAGGCATCCTCGAAGATTTCGCTACACAGGGAGGTGACAGGAAAGATGTTTTCTTTTATCAAGCAGATGATGAGCATTACATTCCACGAGCTCTTTTGATGGATTTGGAGCCTCGAGTTATCAATGGAATTCAAAATAGTGAATATCGAAACCTTTACAACCATGAGAATATATTTCTTTCAGATCATGGTGGGGGAGCTGGAAATAATTGGGCGAGTGGATATCATCAGGGGGAACAGGTTGAAGAAGATATAATGGACATGATTGATAGAGAAGCAGATGGAAGTGACAGTCTTGAAGGCTTTGTTCTGTGCCATTCGATAGCTGGAGGAACTGGTTCAGGAATGGGCTCATATCTGTTGGAAGCTTTAAATGATCGATACAGCAAAAAACTAGTCCAGACATACAGCGTTTTTCCAAACCAGATGGAGACCAGTGATGTTGTTGTACAACCTTACAATTCTCTTTTGACTCTTAAGAGACTGACCTTGAATGCTGACTGTGTTGTGGTACTTGACAATACTGCTTTAAATAGAATTGCTGTGGATCGCCTCCACTTACCAAACCCAACATTTGCACAAACAAACTCCTTGGTGTCAACAGTAATGTCTGCCAGCACAACAACACTTCGCTACCCAGGGTATATGAATAATGATCTGGTTGGTTTGGTTGCCTCTTTGATACCAACACCAAGATGCCACTTTTTAATGACTGGGTACACACCCCTTACGGTGGAGCGTCAGGCTAATGCTATACGCAAGACAACTGTACTTGATGTGATGAGAAGGCTTTTGCAGGCAAAAAATATTATGGTTTCCTCTTATGCTCGTACTAAGGAAGCAAGTCAGGCAAAGTATATATCTATCCTGAACATTATTCAAGGGGAAGTGGATCCCACACAGGTTCATAAAAGCCTTCAGAGAATACGTGAAAGGAAACTGGCTAATTTTATTGAATGGGGACCTGCAAGTATACAGGTTGCTTTATCAAGAAAATCGCCATATGTGCAAACTGCTCACAGGGTCAGTGGTCTTATGCTAGCAAGCCACACAAGCATTCGACATCTCTTTAGTAAGTGCATAAGCCAGTATGAGAAATTGAGGAAGAAGCAAGCCTTTCTGGACAACTATCGGAAGTTTCCTATGTTTGCTGACAACGATTTGTCTGAGTTTGATGAATCCCGAGAAATAGTCCAGAGCTTAGTTGATGAATACAAAGCATGTGAATCACCGGATTATATCAAGTGGGGCATGGAGGATCGGAATCGAACATTGACTGGTGATGGGAGTAGTACAGGAACTTTGGACTCAAGACTGGCATTGTGAAAGTACTATGTGCTGTAAGTGTGGGACGTTTGAGGATGTGTTTGCCATTTATACAGATTTTTTTTTACAAAATAGCCCAAAGTATAATATATCCACAATATCCAGATTGTTACAGATTTTTAAACGTGTTGAGATTCTTTGATAGGATGTTAGCTTTTGTAACACCGCTTTAGTGTACAGTTAGAGCTGATATTGAGCAATGTAATGCTCTCAATGAATTAAGGGCACTACTTTTTACCTATGGCAATTTGGAGGCTTATTGAAATTTTCGACATTTGTTGTAAAAAGTTTATTAATAATTTTGATGGGTTTGCGTGGTCAAGCACAATGTGTTTTATTTTTCAATTAAATCTGGAATATTCTTGGAGTATGATTTCC

Ace file of the UniGene sp_v3.0_unigene1702

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Tubulin gamma-1 chain n=30 Tax=Embryophyta RepID=TBG1_ARATH	-	-	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	35%
Sma3	Gamma tubulin	-	-	-

Source	Gene names
Sma3	PHYPADRAFT_170153;

Source	GOs	Term	Type	Identity
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	microtubule-based process	GO:0007017	Biological Process	-
Sma3	protein polymerization	GO:0051258	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Gamma tubulin	IPR002454	-	-
Sma3	Tubulin	IPR000217	-	-
Sma3	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G05620.1	TUBG2, ATGCP2, GCP2 gamma-tubulin complex protein 2 chr5:1679340-1681719 FORWARD LENGTH=474	94%
RefSeq	Arabidopsis thaliana	NP_196181.1	tubulin gamma-2 chain [Arabidopsis thaliana]	94%
RefSeq	Populus trichocarpa	XP_002302616.1	tubulin gamma-2 chain [Populus trichocarpa]	95%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PPY0

Fln msg:

Fln protein: MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKEGILEDFATQGGDRKDVFFYQADDEHYIPRALLMDLEPRVINGIQNSEYRNLYNHENIFLSDHGGGAGNNWASGYHQGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHLPNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLVASLIPTPRCHFLMTGYTPLTVERQANAIRKTTVLDVMRRLLQAKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHKSLQRIRERKLANFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCISQYEKLRKKQAFLDNYRKFPMFADNDLSEFDESREIVQSLVDEYKACESPDYIKWGMEDRNRTLTGDGSSTGTLDSRLAL*

Protein Length: 476

Fln nts: GATCTCGGTGGAAACAAACTTTTTCTGAGACTTCAATTTTGAGCTAGGCTTGATTCGGCAGCATACACATACATATAACAAGAAAGGATATCTAATCGATATAAACTTTGTCGATCGTCTCCGCATCGTCCTCGTTTCCACCCGTTCTCTCTACTTCAAACGAATTTCCAACGCCCTTCAAATTTCCCTCTTTTTTTCTCATCTCGTCGACAAGGACTAGGAGCAGAGGTCGAATCCTGTAATCCCCAACGGAGCGTAACTAACAGAGCAAGGAGGAATC_-_ATGCCTAGGGAGATAATCACCTTACAGGTGGGGCAATGTGGCAATCAGATCGGTATGGAGTTCTGGAAGCAGCTCTGCCTGGAGCACGGCATCAGCAAAGAAGGCATCCTCGAAGATTTCGCTACACAGGGAGGTGACAGGAAAGATGTTTTCTTTTATCAAGCAGATGATGAGCATTACATTCCACGAGCTCTTTTGATGGATTTGGAGCCTCGAGTTATCAATGGAATTCAAAATAGTGAATATCGAAACCTTTACAACCATGAGAATATATTTCTTTCAGATCATGGTGGGGGAGCTGGAAATAATTGGGCGAGTGGATATCATCAGGGGGAACAGGTTGAAGAAGATATAATGGACATGATTGATAGAGAAGCAGATGGAAGTGACAGTCTTGAAGGCTTTGTTCTGTGCCATTCGATAGCTGGAGGAACTGGTTCAGGAATGGGCTCATATCTGTTGGAAGCTTTAAATGATCGATACAGCAAAAAACTAGTCCAGACATACAGCGTTTTTCCAAACCAGATGGAGACCAGTGATGTTGTTGTACAACCTTACAATTCTCTTTTGACTCTTAAGAGACTGACCTTGAATGCTGACTGTGTTGTGGTACTTGACAATACTGCTTTAAATAGAATTGCTGTGGATCGCCTCCACTTACCAAACCCAACATTTGCACAAACAAACTCCTTGGTGTCAACAGTAATGTCTGCCAGCACAACAACACTTCGCTACCCAGGGTATATGAATAATGATCTGGTTGGTTTGGTTGCCTCTTTGATACCAACACCAAGATGCCACTTTTTAATGACTGGGTACACACCCCTTACGGTGGAGCGTCAGGCTAATGCTATACGCAAGACAACTGTACTTGATGTGATGAGAAGGCTTTTGCAGGCAAAAAATATTATGGTTTCCTCTTATGCTCGTACTAAGGAAGCAAGTCAGGCAAAGTATATATCTATCCTGAACATTATTCAAGGGGAAGTGGATCCCACACAGGTTCATAAAAGCCTTCAGAGAATACGTGAAAGGAAACTGGCTAATTTTATTGAATGGGGACCTGCAAGTATACAGGTTGCTTTATCAAGAAAATCGCCATATGTGCAAACTGCTCACAGGGTCAGTGGTCTTATGCTAGCAAGCCACACAAGCATTCGACATCTCTTTAGTAAGTGCATAAGCCAGTATGAGAAATTGAGGAAGAAGCAAGCCTTTCTGGACAACTATCGGAAGTTTCCTATGTTTGCTGACAACGATTTGTCTGAGTTTGATGAATCCCGAGAAATAGTCCAGAGCTTAGTTGATGAATACAAAGCATGTGAATCACCGGATTATATCAAGTGGGGCATGGAGGATCGGAATCGAACATTGACTGGTGATGGGAGTAGTACAGGAACTTTGGACTCAAGACTGGCATTGTGA___AAGTACTATGTGCTGTAAGTGTGGGACGTTTGAGGATGTGTTTGCCATTTATACAGATTTTTTTTTACAAAATAGCCCAAAGTATAATATATCCACAATATCCAGATTGTTACAGATTTTTAAACGTGTTGAGATTCTTTGATAGGATGTTAGCTTTTGTAACACCGCTTTAGTGTACAGTTAGAGCTGATATTGAGCAATGTAATGCTCTCAATGAATTAAGGGCACTACTTTTTACCTATGGCAATTTGGAGGCTTATTGAAATTTTCGACATTTGTTGTAAAAAGTTTATTAATAATTTTGATGGGTTTGCGTGGTCAAGCACAATGTGTTTTATTTTTCAATTAAATCTGGAATATTCTTGGAGTATGATTTCC

Fln Alignment:

Contig1702___REIITLQVGQCGNQIGMEFWKQLCLEHGISKEGILEDFATQGGDRKDVFFYQADDEHYIPRALLMDLEPRVINGIQNSEYRNLYNHENIFLSDHGGGAGNNWASG-YHQGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHLPNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLVASLIPTPRCHFLMTGYTPLTVERQANAIRKTTVLDVMRRLLQAKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHKSLQRIRERKLANFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCISQYEKLRKKQAFLDNYRKFPMFADNDLSEFDESREIVQSLVDEYK------ACESPDYIKWGMED
C0PPY0______________REILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGTYRGNSDLQLERVNVYYNEASGGRYVPRAVLMDLEPGTMDSLRTGPYGQIFRPDNFVFGQNG--AGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLIISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLT-SRGSQQYRALTIPELTQQMWDAKNMMCAADPR-----HGRYLTASAMFRGKMSTKEVDEQMMNVQNRNSSYFVEWIPNNVKSSVCDIPP---TGLTMSSTFIGNSTSIQEMFRRVSEQFTVMFKRKAFLHWYTGEGM----DEMEFTEAESNMNDLVSEYQQYQDANVDEEEDYEEEPLED

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1763	25			25	0.995533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain