SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1691

Length: 2186 nt

UniGene Fasta

>sp_v3.0_unigene1691
TGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGACGGACAGCGGTTCGAATCGCCCCGGCTCTTCGTATTTCATGGTGGATCGCCTGCAAAGCTCGGGCTCGGAATCGTGAAATCACCTCGAAATTAAAGCCCGGCATTTCGAATCCGGCTATTTCTTCGGCAAAGGTGAACCAAGTGTTTCTTCTCATTCAAATCTCATTTGATTTGGAGATCGGAGTCGCGTAATTGTGAATTCTGTTTAATTCTTTTGGATTGGTGATCGAGCGATCGCTATTCCCGGGTTGCATGGTTCGTCTGGTCTGAAAATACGGCCTGCCAAGATTTTTGAGTCCTCGTGCGGTCTCAGCTTGCATGCTTGAGCGATTTTTAATAAGAAATTCCTTGCCGTCACGAAGGAAGAAAGGGCAAACGGTTTAGAGCAGGTTTATTTGACCTGGATCTACGAATCGGATTGTAGCTTAAAGTATGGTGGATGCTTATTTGCCAGGATCTGGATATTTATTTTAAAGTTCTTAGGTTTCGATTCGGCAGCGTTCATTGCATCGTTGAATACTCGGCGCGCTTGTGGCAGGGTTTGTGGTTTAATTCAGTTCTTCTGGAATGACCACAATGGGGGAAGATTATTACGCGACCCTTAAAGTGGGCAATGGTGCGTCTAGCGACGACATCAAGAAAGCTTATCGCAGGCTTGCCATGAAGTGGCATCCAGATAAGAATCCTAACAACAGGAAGGAGGCGGAGGCTAACTTCAAGCGTATTTCAGAGGCTTATGAGGTTCTTAGTGATTCTGAAAAGCGTGCTATTTATGATCAATATGGAGAGGAGGGACTAAAAGGACAGTTTGCTCCCCCAAGTCCTACTTCATCTGGCTTTTCCAATGGTAATGGCCCTAATGGCTTCAGGTTCAATCCAAAAAACGCAGAAGACATTTTTGCAGAGTTTTTTGGTTCCAATGCCTTCCCAAACATGGGATCAACAGGCAGCAGACCTGGAGGTTCACTTTTCAATGGTAAACCTTATGGATTTTCCCAAGGAAACAGTGCGTACCCATCCTATCGAGATTCTTTGCTGCATGATAGAGGGGGCAGTTCGGCGGGCCCACGCAAAGATCCTCCGATTGAAAGCAAACTAAAGTGCACCCTTGAAGAACTATATAATGGCGCTGTTAGGAAGATGAAGATTTCAAGGGATGTGCTAAATGGCAGTGGCAAGACTGTGACCATTCAAGAGGTTTTGAGTATAGAAATAAAACCAGGATGGAAGAAAGGGACTAAGATAACCTTTCCAGAGAAGGGGAATGAGCAGTTAGGAGTTGTGGCTGCTGATCTGGTATTTGTGATTGATGAGAGGCCGCATGATTTGTTCAGACGAGAAGGCAATGACTTGTTGCTTGTCCAGAAGATAGGCTTGGTTGAAGCTCTGACAGGATTTTCTATCACAATTCCAACATTGAGTGGGAAGCAACTAAATCTTACCTTCAATGACATTATATACCCTGGGTATGAAAAAATTATTCCCAAGGAGGGAATGCCCATTGCAAAGGAGCATGGCAGGAAAGGCAATTTTAGAATCAAGTTTGAAATTAGATTTCCCTCCAAACTCAGTCCTGAGCAGAAGGCTGGAATCAAGAGAATTCTGGGAGGCCATGCTTGACATTGCTGTTTCAAGTTGTGCCTCTTTTATTGTAGATACTTAACAAGACTGAAATAGATATAACGAAAATAGCTGATCGTAGTTGCGAGTTCATCCACCAAATTGTAAAAGTTACCATTTGTATATCTTCTTAGTGAGCTGAAATAAGTGGCCAGAGTTATATCTGCCTTTTTGATTGAGTCCTACCGCTATCGAATGCATTCCTTTTCTGTGTGGATTTTGTACAACTTGCTTTATTGCCAAGTTTTTTTTGCCAATTTTTGGCCTTGGCTTGCTTAGCATGTCCATATACTAGATCGTAACTACCACTATATTGCAATGGCATTGCTTGCACCTGCAGATTATGCCAATTCTTATGAAACTTCCTTATTCTTTAATTTCACTGGAGTACCAATGATGTGAGCAGTTCAAAGCTGATGATATGATCTACAGAACTTAACTTTTGTCAGTTACAATGCGTATGAATTGTATGATGACTACTGGACTTGCAGCTGTGTTGGAAGGGGCTATTGTTCTTGATAAACCGAG

Ace file of the UniGene sp_v3.0_unigene1691

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Heat shock protein DnaJ [Medicago truncatula]	-	-	0.0	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Sma3	Protein SIS1, putative	-	-	6.038e-11	-

Source	Gene names
Sma3	AT2G20550; AT4g28480; At1g10350; At1g11040; At1g44160; At2g20550; At2g20560; At3g08910; At3g47940; At4g28480; At5g01390; At5g01390/T10O8_100; At5g25530; CHLREDRAFT_96566; CPIP1; CPIP2a; CPIP2b; DNJ35; F20O9.160; F23H11.4; GSVIVT00000072001; GSVIVT00003050

Source	GOs	Term	Type	Identity
Sma3	heat shock protein binding	GO:0031072	Molecular Function	-
Sma3	unfolded protein binding	GO:0051082	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Chlorophyll A-B binding protein, plant	IPR001344	-	-
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Chaperone DnaJ, C-terminal	IPR002939	-	-
Sma3	Heat shock protein DnaJ	IPR003095	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3		IPR015609	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-
Sma3	Ribosomal protein S14, conserved site	IPR018271	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G20560.1	DNAJ heat shock family protein chr2:8848353-8849815 REVERSE LENGTH=337	53%
RefSeq	Arabidopsis thaliana	NP_179646.1	DNAJ heat shock protein-like protein [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002329800.1	predicted protein [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9M1

Fln msg:

Fln protein: MTTMGEDYYATLKVGNGASSDDIKKAYRRLAMKWHPDKNPNNRKEAEANFKRISEAYEVLSDSEKRAIYDQYGEEGLKGQFAPPSPTSSGFSNGNGPNGFRFNPKNAEDIFAEFFGSNAFPNMGSTGSRPGGSLFNGKPYGFSQGNSAYPSYRDSLLHDRGGSSAGPRKDPPIESKLKCTLEELYNGAVRKMKISRDVLNGSGKTVTIQEVLSIEIKPGWKKGTKITFPEKGNEQLGVVAADLVFVIDERPHDLFRREGNDLLLVQKIGLVEALTGFSITIPTLSGKQLNLTFNDIIYPGYEKIIPKEGMPIAKEHGRKGNFRIKFEIRFPSKLSPEQKAGIKRILGGHA*

Protein Length: 352

Fln nts: TGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGACGGACAGCGGTTCGAATCGCCCCGGCTCTTCGTATTTCATGGTGGATCGCCTGCAAAGCTCGGGCTCGGAATCGTGAAATCACCTCGAAATTAAAGCCCGGCATTTCGAATCCGGCTATTTCTTCGGCAAAGGTGAACCAAGTGTTTCTTCTCATTCAAATCTCATTTGATTTGGAGATCGGAGTCGCGTAATTGTGAATTCTGTTTAATTCTTTTGGATTGGTGATCGAGCGATCGCTATTCCCGGGTTGCATGGTTCGTCTGGTCTGAAAATACGGCCTGCCAAGATTTTTGAGTCCTCGTGCGGTCTCAGCTTGCATGCTTGAGCGATTTTTAATAAGAAATTCCTTGCCGTCACGAAGGAAGAAAGGGCAAACGGTTTAGAGCAGGTTTATTTGACCTGGATCTACGAATCGGATTGTAGCTTAAAGTATGGTGGATGCTTATTTGCCAGGATCTGGATATTTATTTTAAAGTTCTTAGGTTTCGATTCGGCAGCGTTCATTGCATCGTTGAATACTCGGCGCGCTTGTGGCAGGGTTTGTGGTTTAATTCAGTTCTTCTGGA_-_ATGACCACAATGGGGGAAGATTATTACGCGACCCTTAAAGTGGGCAATGGTGCGTCTAGCGACGACATCAAGAAAGCTTATCGCAGGCTTGCCATGAAGTGGCATCCAGATAAGAATCCTAACAACAGGAAGGAGGCGGAGGCTAACTTCAAGCGTATTTCAGAGGCTTATGAGGTTCTTAGTGATTCTGAAAAGCGTGCTATTTATGATCAATATGGAGAGGAGGGACTAAAAGGACAGTTTGCTCCCCCAAGTCCTACTTCATCTGGCTTTTCCAATGGTAATGGCCCTAATGGCTTCAGGTTCAATCCAAAAAACGCAGAAGACATTTTTGCAGAGTTTTTTGGTTCCAATGCCTTCCCAAACATGGGATCAACAGGCAGCAGACCTGGAGGTTCACTTTTCAATGGTAAACCTTATGGATTTTCCCAAGGAAACAGTGCGTACCCATCCTATCGAGATTCTTTGCTGCATGATAGAGGGGGCAGTTCGGCGGGCCCACGCAAAGATCCTCCGATTGAAAGCAAACTAAAGTGCACCCTTGAAGAACTATATAATGGCGCTGTTAGGAAGATGAAGATTTCAAGGGATGTGCTAAATGGCAGTGGCAAGACTGTGACCATTCAAGAGGTTTTGAGTATAGAAATAAAACCAGGATGGAAGAAAGGGACTAAGATAACCTTTCCAGAGAAGGGGAATGAGCAGTTAGGAGTTGTGGCTGCTGATCTGGTATTTGTGATTGATGAGAGGCCGCATGATTTGTTCAGACGAGAAGGCAATGACTTGTTGCTTGTCCAGAAGATAGGCTTGGTTGAAGCTCTGACAGGATTTTCTATCACAATTCCAACATTGAGTGGGAAGCAACTAAATCTTACCTTCAATGACATTATATACCCTGGGTATGAAAAAATTATTCCCAAGGAGGGAATGCCCATTGCAAAGGAGCATGGCAGGAAAGGCAATTTTAGAATCAAGTTTGAAATTAGATTTCCCTCCAAACTCAGTCCTGAGCAGAAGGCTGGAATCAAGAGAATTCTGGGAGGCCATGCTTGA___CATTGCTGTTTCAAGTTGTGCCTCTTTTATTGTAGATACTTAACAAGACTGAAATAGATATAACGAAAATAGCTGATCGTAGTTGCGAGTTCATCCACCAAATTGTAAAAGTTACCATTTGTATATCTTCTTAGTGAGCTGAAATAAGTGGCCAGAGTTATATCTGCCTTTTTGATTGAGTCCTACCGCTATCGAATGCATTCCTTTTCTGTGTGGATTTTGTACAACTTGCTTTATTGCCAAGTTTTTTTTGCCAATTTTTGGCCTTGGCTTGCTTAGCATGTCCATATACTAGATCGTAACTACCACTATATTGCAATGGCATTGCTTGCACCTGCAGATTATGCCAATTCTTATGAAACTTCCTTATTCTTTAATTTCACTGGAGTACCAATGATGTGAGCAGTTCAAAGCTGATGATATGATCTACAGAACTTAACTTTTGTCAGTTACAATGCGTATGAATTGTATGATGACTACTGGACTTGCAGCTGTGTTGGAAGGGGCTATTGTTCTTGATAAACCGAG

Fln Alignment:

Contig1691___MTTMGEDYYATLKVGNGASSDDIKKAYRRLAMKWHPDKNPNNRKEAEANFKRISEAYEVLSDSEKRAIYDQYGEEGLKGQFAXXXXXXXXXXXXXXXXXXXXXXKNAEDIFAEFFGSNAFPNMGSTGSRPGGSLFNGKPYGFSQGNSAYPSYRDSLLHDRGGSSAGPRKDPPIESKLKCTLEELYNGAVRKMKISRDVLNGSGKTVTIQEVLSIEIKPGWKKGTKITFPEKGNEQLGVVAADLVFVIDERPHDLFRREGNDLLLVQKIGLVEALTGFSITIPTLSGKQLNLTFNDIIYPGYEKIIPKEGMPIAKEHGRKGNFRIKFEIRFPSKLSPEQKAGIKRILGGHA
D5A9M1______________MSTMGEDYYATLKVGSGASSDDIKKAYRRLAMKWHPDKNPNNRKEAEANFKRISEAYEALSDSEKRAIYDQYGEEGLKGQFAPPSPSSSGFSNGNGFKFHP---KDADDIFAEFFGATTHPNMGSTSGRPGGSRFNDKPNGFQQGNSAFTSFRDPL-RDRGGSSAVPRKDPPIESKLKCTLEELYNGAVRKMKISRDVLNGSGKTVTIQEVLSIEIKPGWKKGTKVTFPEKGNQQLGVVAADLIFVIDEKPHDLFKREGNDLVLVQKISLVEALTGCCITIPTLSGKKLNLTFNDIIYPGYEKIIPKEGMPIAKEHGRKGNFRIKFEIRFPSRLSPEQKAGIKRILGGHA

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
1186	86			13	0.999973
1601		90		10	0.90298
1696		12	87		0.992554
1699	87			12	0.992554
1726	12		87		0.992554
1734		75		25	1.0
1811	16		83		0.994512
1812		16	83		0.994512
1813	16	83			0.994512
1814		83		16	0.994512
1815	83			16	0.994512
1914			75	25	0.996473
2035	12			87	0.992554
2036		12		87	0.992554
2038	85			14	0.993533
2062	33		66		1.0
2071	66	33			1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain