SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1687

Length: 1568 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene1687

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF716 domain containing protein	-	-	0.0	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	36%
Sma3	Plant viral-response family protein-like	-	-	2.502e-08	-

Source	Gene names
Sma3	At1G55230; At1g49470; At1g55230; At1g55240; At5g19870; B1111C03.20; B1111C03.21; B1116H04.8; B1116H04.9; F13F21.10; F7A10.18; F7A10.19; GSVIVT00001179001; GSVIVT00024749001; GSVIVT00036464001; MtrDRAFT_AC149207g16v2; OJ1123_B08.13; OJ1123_B08.15-1; OJ1123

Source	GOs	Term	Type	e value	Identity
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Protease inhibitor I4, serpin	IPR000215	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Protein of unknown function DUF716, TMEM45	IPR006904	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G55230.1	Family of unknown function (DUF716) chr1:20602895-20603797 FORWARD LENGTH=300	48%
RefSeq	Arabidopsis thaliana	NP_175919.1	uncharacterized protein [Arabidopsis thaliana]	48%
RefSeq	Populus trichocarpa	XP_002304874.1	predicted protein [Populus trichocarpa]	49%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NX20

Fln msg: your sequence is longer than subject: 325 - 286

Fln protein: MGTFVGHVLPGAGFLLIGLWHLFNTITNYARSPWDFHTRPWFPTKFGAGKLKYLELVAIIVGSCLSISAELFIGPAKHQPLADDWSIPPEHLNNFEHSSISLFFLIYASVALYAELRQFTVPPGALHVIAALAFSQELLLFHLHSADHMGAEGHYHWLLQLIVAVSVSATLLEIPFPHSFLMATVRSASVLFQGAWFVHMGFMLWIPAFIPKGCQMERSGGHDIVNCASHEATMRAKALANLQFNWYLAGILVFTVTFYARTVGIYTDKPAYQPLERKAANESDNTAHAAVEMGSHGVEKRYFRDASQSSIDVASLEEAPKLGR*

Protein Length: 326

Fln nts: CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGATAAATAGCTGTATTATTTCTCAGTTAGGGGGGTTTTCCTAGCTAATTTATCTATCATCC_-_ATGGGTACCTTCGTTGGCCATGTCTTACCAGGGGCAGGATTTCTGCTCATCGGTCTCTGGCATCTCTTCAACACAATCACAAACTACGCGCGGTCTCCATGGGACTTCCACACTCGGCCATGGTTCCCCACCAAATTTGGCGCAGGGAAGTTAAAGTACCTGGAGCTGGTGGCCATTATAGTAGGGTCCTGTCTTTCGATTTCGGCGGAGCTGTTCATCGGGCCGGCGAAGCACCAGCCGCTGGCAGACGACTGGAGCATACCGCCGGAACACCTCAATAACTTCGAGCACTCGTCTATATCGTTGTTCTTCCTCATCTACGCTTCCGTGGCTCTCTACGCGGAGCTCCGTCAATTCACAGTTCCTCCCGGGGCGCTGCACGTGATCGCGGCGCTGGCTTTCAGCCAGGAGCTGCTGCTTTTCCATCTCCACTCCGCCGACCACATGGGGGCGGAGGGGCACTACCACTGGCTCCTCCAGCTCATCGTTGCCGTCAGTGTGTCGGCTACGTTGCTCGAGATTCCGTTCCCGCATAGCTTTCTAATGGCAACGGTGCGGTCCGCGTCAGTGTTATTCCAGGGGGCGTGGTTCGTCCACATGGGGTTCATGCTCTGGATCCCGGCCTTCATTCCCAAGGGCTGCCAGATGGAGCGCTCAGGGGGCCACGACATCGTCAATTGCGCCAGCCATGAAGCAACGATGCGGGCCAAGGCGCTCGCTAATTTACAATTCAACTGGTATCTTGCCGGGATTCTTGTATTCACGGTCACCTTCTATGCAAGAACAGTCGGAATTTACACCGACAAACCCGCGTATCAGCCGCTGGAGCGCAAGGCTGCGAACGAAAGCGACAACACGGCGCATGCAGCCGTGGAGATGGGCAGCCACGGAGTCGAGAAGCGGTACTTTCGCGACGCTTCGCAGAGCTCCATCGACGTTGCGAGTTTGGAGGAAGCACCGAAGCTCGGAAGATGA___AAAACACCCATCAGATATTCTTCGACTAGAGGACTTGTACAGTTCGAATGCCACTGTGAAAATAGCCCCTCGGCATTGAAATCTAATAAACCCCTCATTAATTTGCCGTAATATTCCTTCCCCATTAGAGTAATGCCTGAATTTCAGGCTTATAATGTAAAACCAAATGGAATGCAAATATGGCCGGGTTCGATTCGTGGGAACTCGCAGCTGGAATTGGAACAGCCGATTCCAGTCTTATTCAGGATACAGGAATATTAGGTCTGAGAAATTGCGTAACGTTTTCCAGTTCCGACGGAAAACGCCGTTGTATAATATTCTTCAGTTGCGTGAGCCCATGCAGCGCACGCTAAATATATGTACGGTTTCAACGCTGGTTGTATATAAAAATAAAAGGCTGCTTGAGCGCTGTGGATCTGCATCGAATTTATAGCGTACGATGCAAGCTAATTAATTTGATGTGTTCTACTGAATTTTATTTTAAAAATAAAGATGG

Fln Alignment:

Contig1687___MGTFVGHVLPGAGFLLIGLWHLFNTITNYARSPWDFHTRPWFPTKFGAGKLKYLELVAIIVGSCLSISAELFIGPAKHQPLADDWSIPPEHLNNFEHSSISL-FFLIYASVALYAELRQFTVPPGALHVIAALAFSQELLLFHLHSADHMGAEGHYHWLLQLIVAVSVSATLLEIPFPHSFLMATVRSASVLFQGAWFVHMGFMLWIPAFIPKGCQMERSGGHDIVNCASHEATMRAKALANLQFNWYLAGILVFTVTFYARTVGIYTDKPAYQPLERKAANESDNTAH
A9NX20______________MGSFKGHVLPGSLFLLVGLWHIWNSVMKYVANPKSHRVRIWHPVPGISSNLKYLEIYIIVIGSFVDMCIEFFY--STHLKFVVDGTLNPSHMNDFEHAGMLLMFFILGVTVLISEKTRYLPLPHGVLEIIAAMAFFAEYLLFNFHSTSHAGLEGRYHQLLVLLVGLCVMSAVLAAAFPKSFVVDLLGGITFTLQGTWFYQVAFALYGP-MMPTGCSIE---DHEIV-CQSREFEIRGQLLANFQLGVIVLSLLTMVVFLFGFAASRCGHPSLYQ-----SNNESQDTKY

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
47		33		66	0.997452
51	66		33		0.997452
53			33	66	0.997452
56		33		66	0.997452
59		66	33		0.997452
60			33	66	0.997452
62	66			33	0.997452
65		33		66	0.997452
68			66	33	0.997452
69		33	66		0.997452
70	33		66		0.997452
134	33		66		0.997452
154		33		66	0.997452
194			33	66	0.997452
1121	11		88		0.923564
1149		88		11	0.923564
1150	88		11		0.923564
1152		11		88	0.923564
1443		10		90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain