SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1679

Length: 2900 nt

UniGene Fasta

>sp_v3.0_unigene1679
CACTTATCGAACAAACATCGAGAAAGGAGATAAGGGGGAAACACTTTTCAATCTTTTTAAATTCCGTCAAAACCTCTGAAACCCACCCAGTTTTTCACTAGTCCCAAGCAGCGAAAATAGTGGGGACTCGCAGGAACAGTGGCCTTATACTCCTGAAATCTGGGTTCCAAATTAAAGGCAAATTTCATCGAAGCTCTTCAACGATCAGCCCGTTGGTAAATCAGGTTTTGATAACTCATATTGCCCTTGCGGTTAAGGACTTTTGAAAGAAATCCTGGCGTTGAATATTTTTTTCCACATAGTACTTGGTTCTTCTAACCTTCAGTCCGAGTACTTGGAAAGAAACAAAATTCTGCAGTTTAAGTAACATTATGGTTCTTTCAAACTAAATTTACCCGGAGTCAATATCAATGATGGCGGCTACAAGTTCTTTGCAATTGTTCCATGTTCTAAGACCTTGCAACCACCGTGGACAATCTACTCGCTTCGAGAGACAGGATGCTTGGAGCCTCAAGATGTCAAAAAGAGTAAACATGCCACCGTGTACAGTCCCTACTTTTCGGGCTGTTGTCACCTGCAAATCTCTATTCAGTTCAGGACAATTAAATCAGGCACTTTTACTGTCCATTAAACCTGCAGCTTTATCATTGACCAGGGCATACAATGCCTTGCAAGGGAGCCCTCTTGTGCTTCAGTGTGCCCCAGCAGTTGGGCTTATGGCATTTTCTGTGTGGGGACTTGAGCCATCTCTGCAAGTTATTCGTCATTTGATACTTCGTCGGAATGCAAACAATTGGAAAAGAAGCAGCACATATCACATCATGACCTCCTATTTACAGCCAATTCTGCTATGGTTAGGTGCAATATTGATCTGCAGGGCTTTTGATCCTGTTGTGTTATCCTCTGAAACAAGCCAAGCTGTCAAGCAGCGGCTTGTAAACTTTGTGAGATCGCTATCAACTGTCTTGGCTTTTGCATATTGTATATCTAGCTTGATTCAGCAGGCACAGAAATTTGTAATGGAGCACAATGACACCCAGGACACAAGACATGTTGGATTTAACTTCATTGGAAAAGCTATTTATACTGCAGTGTGGGTGGCAGCGGTATCCTTGTTCATGGAGCTATTGGGGTTTTCAACACAGAAATGGATCACTGCTGGAGGGCTGGGAACAGTTTTGTTGACTCTTGCTGGTCGTGAGATATTTACCAATTTCCTGTCAAGTGTAATGATCCATGCAACTCGCCCTTTTGTTGTGAGTGAGTGGATTCAAACCAAGATCGACGGCTATGAAGTTTCTGGAACTGTGGAACATGTTGGTTGGTGGTCTCCGACTATTGTCAGAGGAGATGATCGGGAGGCTGTGCATATTCCAAATCACAAGTTCACTGTGAGTGTTGTTCGGAATCTTACTCAAAAGAGCCATTGGCGCATTAAGACTCATCTCGCTATCAGCCATCTAGATGTCAGCAAAATTGGTAATATTGTAGCTGATATGCGGAAAGTCTTAGCAAAAAATCATCAAGTGGAGCAACAACGGTTGCATCGAAGAGTATTTCTGGATAATATCGATCCAGAAAATCAGGCACTTTTGATTTTGGTTTCTTGCTTTGTAAAGACCCCCCACTTTGAAGAGTATCTTTGTGTTAAGGAAGCCATTTTATTGGACCTTCTAAGAGTTATCAGTCATCATCGTGCCCGATTGGCTACTCCAATCCGTACTGTACAGAAAGTATATGGTGACAGCGAGACACAGAATATACCATTTGAGGAAACCATAATCAGAAGAGGAGTGCCTAAGATGATTGAAAGTCCAAAATTAACTGTCGAGGATAAAGTAAAACAACGTTCTCTTCGTAGCAAGGAAGAGTTGAATACTGTTCATCCAAAGGCAGTGTCTGTAGAGGCTAAAGGGACTGAACCTGGAGTTTCTTCCAATGAGAATACAAAACCTAGTAGCTTGGATGGAAAGAATATTCACAAGCAGAAAGAGAAAGAGAAAGATAGGGACCATGCTCCTTCAGACTTGCAACCAAAGATGCTAGATGCAGTTCAAACATCACATACAAAGCCATCTCTTGAAGGTTTAGATTCAATGGGACTGAATTCCAAGGACATCACATTGCTTAGGGCAGCATTTGAGAAACCTCCAGTTATTATTCCTGAAGCACCCAGGGATCCTGTAATTCCAAAGAATGAGAATGGAAATAATGAGAAGAACAATGCAAGGAGTGAGAAGAATGCTACAACTAATGAGAAGTCAAACTCACAAGTTTTTGAAAAGCAATCATATCAAAATATTAAGGGAGGTGAAAAGAATGGGAGCAAGCTATCTATTGAAGTTGATAGTTCAACCATAGAAATAAATAAAGGTAAGGCCAACTCTGTAGGTGAATTGGAAATCGAACTAAGACCTGAGAAAAACAAACAAAAAGGCCAGGGGTCTTCCTCTGTACCATCTTCCAAGCATGAGAATGAACGATCTGTTAATTCTGCCTCAATCTCAAGACCTCTGCTGAAACAAAATTTACCTCTGGGTGTTGCTCTGGACGGGCCAAAAAGAACTCTTCCAATTGAGGGAGAAATTACTTCACAAGTGGAGCAGAAAGAACTTGCACCATTGCGAAATGGTAATAGTAGTTCTGGAGTCAAGGATAGGAGGGAACCTCAGTCACCATCCTCAAGCTCTGTTCATTCTGATGAAAAAGATCAGTAGAGGTGATGACAGTAGTATCTGGTAACTTATAGAACCCTGGCATGTTTGTTAATTTACTAACTAATCCATCTTGTTAGGATGCCATAGAATGGGCAGAATAAAAGGGTAGTATCAGAGTTTTCTGAATGTCTTTTGAATCTGATCACTATATAGTATTCTTATATATTATATAGATTTGTAATA

Ace file of the UniGene sp_v3.0_unigene1679

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MSCS-like 2 protein [Arabidopsis thaliana] dbj\|BAH20174.1\| AT5G10490 [Arabidopsis thaliana] gb\|AED91552.1\| MSCS-like 2 protein [Arabidopsis thaliana]	-	-	0.0	53%
FL-Next	Isoform 3 of Mechanosensitive ion channel protein 2, chloroplastic OS=Arabidopsis thaliana GN=MSL2	-	-	0.0	55%

Source	Gene names
Sma3	117M18_28; At1g58200; At5g10490; F12B17_160; F16M22.2; GSVIVT00004027001; GSVIVT00011022001; GSVIVT00013201001; GSVIVT00015104001; GSVIVT00015105001; LOC_Os03g31839; MSCL10; MSCL11; MSCL8; MSCL9; OSJNBb0031F05.17; Os03g0432900; OsI_12168; OsJ_11375; PHYPA

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	plastid envelope	GO:0009526	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	ion channel activity	GO:0005216	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	response to osmotic stress	GO:0006970	Biological Process	-
Sma3	plastid organization	GO:0009657	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Transposase, MuDR, plant	IPR004332	-	-
Sma3	Zinc finger, PMZ-type	IPR006564	-	-
Sma3	Mechanosensitive ion channel MscS	IPR006685	-	-
Sma3	Zinc finger, SWIM-type	IPR007527	-	-
Sma3	Extracellular solute-binding protein, family 3, conserved site	IPR018313	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G10490.1	MSL2 MSCS-like 2 chr5:3300376-3304005 REVERSE LENGTH=673	55%
RefSeq	Arabidopsis thaliana	NP_001078567.1	MSCS-like 2 protein [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002302344.1	predicted protein, partial [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q56X46-3

Fln msg: your sequence is longer than subject: 769 - 645

Fln protein: MMAATSSLQLFHVLRPCNHRGQSTRFERQDAWSLKMSKRVNMPPCTVPTFRAVVTCKSLFSSGQLNQALLLSIKPAALSLTRAYNALQGSPLVLQCAPAVGLMAFSVWGLEPSLQVIRHLILRRNANNWKRSSTYHIMTSYLQPILLWLGAILICRAFDPVVLSSETSQAVKQRLVNFVRSLSTVLAFAYCISSLIQQAQKFVMEHNDTQDTRHVGFNFIGKAIYTAVWVAAVSLFMELLGFSTQKWITAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVSEWIQTKIDGYEVSGTVEHVGWWSPTIVRGDDREAVHIPNHKFTVSVVRNLTQKSHWRIKTHLAISHLDVSKIGNIVADMRKVLAKNHQVEQQRLHRRVFLDNIDPENQALLILVSCFVKTPHFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKVYGDSETQNIPFEETIIRRGVPKMIESPKLTVEDKVKQRSLRSKEELNTVHPKAVSVEAKGTEPGVSSNENTKPSSLDGKNIHKQKEKEKDRDHAPSDLQPKMLDAVQTSHTKPSLEGLDSMGLNSKDITLLRAAFEKPPVIIPEAPRDPVIPKNENGNNEKNNARSEKNATTNEKSNSQVFEKQSYQNIKGGEKNGSKLSIEVDSSTIEINKGKANSVGELEIELRPEKNKQKGQGSSSVPSSKHENERSVNSASISRPLLKQNLPLGVALDGPKRTLPIEGEITSQVEQKELAPLRNGNSSSGVKDRREPQSPSSSSVHSDEKDQ*

Protein Length: 770

Fln nts: CACTTATCGAACAAACATCGAGAAAGGAGATAAGGGGGAAACACTTTTCAATCTTTTTAAATTCCGTCAAAACCTCTGAAACCCACCCAGTTTTTCACTAGTCCCAAGCAGCGAAAATAGTGGGGACTCGCAGGAACAGTGGCCTTATACTCCTGAAATCTGGGTTCCAAATTAAAGGCAAATTTCATCGAAGCTCTTCAACGATCAGCCCGTTGGTAAATCAGGTTTTGATAACTCATATTGCCCTTGCGGTTAAGGACTTTTGAAAGAAATCCTGGCGTTGAATATTTTTTTCCACATAGTACTTGGTTCTTCTAACCTTCAGTCCGAGTACTTGGAAAGAAACAAAATTCTGCAGTTTAAGTAACATTATGGTTCTTTCAAACTAAATTTACCCGGAGTCAATATCA_-_ATGATGGCGGCTACAAGTTCTTTGCAATTGTTCCATGTTCTAAGACCTTGCAACCACCGTGGACAATCTACTCGCTTCGAGAGACAGGATGCTTGGAGCCTCAAGATGTCAAAAAGAGTAAACATGCCACCGTGTACAGTCCCTACTTTTCGGGCTGTTGTCACCTGCAAATCTCTATTCAGTTCAGGACAATTAAATCAGGCACTTTTACTGTCCATTAAACCTGCAGCTTTATCATTGACCAGGGCATACAATGCCTTGCAAGGGAGCCCTCTTGTGCTTCAGTGTGCCCCAGCAGTTGGGCTTATGGCATTTTCTGTGTGGGGACTTGAGCCATCTCTGCAAGTTATTCGTCATTTGATACTTCGTCGGAATGCAAACAATTGGAAAAGAAGCAGCACATATCACATCATGACCTCCTATTTACAGCCAATTCTGCTATGGTTAGGTGCAATATTGATCTGCAGGGCTTTTGATCCTGTTGTGTTATCCTCTGAAACAAGCCAAGCTGTCAAGCAGCGGCTTGTAAACTTTGTGAGATCGCTATCAACTGTCTTGGCTTTTGCATATTGTATATCTAGCTTGATTCAGCAGGCACAGAAATTTGTAATGGAGCACAATGACACCCAGGACACAAGACATGTTGGATTTAACTTCATTGGAAAAGCTATTTATACTGCAGTGTGGGTGGCAGCGGTATCCTTGTTCATGGAGCTATTGGGGTTTTCAACACAGAAATGGATCACTGCTGGAGGGCTGGGAACAGTTTTGTTGACTCTTGCTGGTCGTGAGATATTTACCAATTTCCTGTCAAGTGTAATGATCCATGCAACTCGCCCTTTTGTTGTGAGTGAGTGGATTCAAACCAAGATCGACGGCTATGAAGTTTCTGGAACTGTGGAACATGTTGGTTGGTGGTCTCCGACTATTGTCAGAGGAGATGATCGGGAGGCTGTGCATATTCCAAATCACAAGTTCACTGTGAGTGTTGTTCGGAATCTTACTCAAAAGAGCCATTGGCGCATTAAGACTCATCTCGCTATCAGCCATCTAGATGTCAGCAAAATTGGTAATATTGTAGCTGATATGCGGAAAGTCTTAGCAAAAAATCATCAAGTGGAGCAACAACGGTTGCATCGAAGAGTATTTCTGGATAATATCGATCCAGAAAATCAGGCACTTTTGATTTTGGTTTCTTGCTTTGTAAAGACCCCCCACTTTGAAGAGTATCTTTGTGTTAAGGAAGCCATTTTATTGGACCTTCTAAGAGTTATCAGTCATCATCGTGCCCGATTGGCTACTCCAATCCGTACTGTACAGAAAGTATATGGTGACAGCGAGACACAGAATATACCATTTGAGGAAACCATAATCAGAAGAGGAGTGCCTAAGATGATTGAAAGTCCAAAATTAACTGTCGAGGATAAAGTAAAACAACGTTCTCTTCGTAGCAAGGAAGAGTTGAATACTGTTCATCCAAAGGCAGTGTCTGTAGAGGCTAAAGGGACTGAACCTGGAGTTTCTTCCAATGAGAATACAAAACCTAGTAGCTTGGATGGAAAGAATATTCACAAGCAGAAAGAGAAAGAGAAAGATAGGGACCATGCTCCTTCAGACTTGCAACCAAAGATGCTAGATGCAGTTCAAACATCACATACAAAGCCATCTCTTGAAGGTTTAGATTCAATGGGACTGAATTCCAAGGACATCACATTGCTTAGGGCAGCATTTGAGAAACCTCCAGTTATTATTCCTGAAGCACCCAGGGATCCTGTAATTCCAAAGAATGAGAATGGAAATAATGAGAAGAACAATGCAAGGAGTGAGAAGAATGCTACAACTAATGAGAAGTCAAACTCACAAGTTTTTGAAAAGCAATCATATCAAAATATTAAGGGAGGTGAAAAGAATGGGAGCAAGCTATCTATTGAAGTTGATAGTTCAACCATAGAAATAAATAAAGGTAAGGCCAACTCTGTAGGTGAATTGGAAATCGAACTAAGACCTGAGAAAAACAAACAAAAAGGCCAGGGGTCTTCCTCTGTACCATCTTCCAAGCATGAGAATGAACGATCTGTTAATTCTGCCTCAATCTCAAGACCTCTGCTGAAACAAAATTTACCTCTGGGTGTTGCTCTGGACGGGCCAAAAAGAACTCTTCCAATTGAGGGAGAAATTACTTCACAAGTGGAGCAGAAAGAACTTGCACCATTGCGAAATGGTAATAGTAGTTCTGGAGTCAAGGATAGGAGGGAACCTCAGTCACCATCCTCAAGCTCTGTTCATTCTGATGAAAAAGATCAGTAG___AGGTGATGACAGTAGTATCTGGTAACTTATAGAACCCTGGCATGTTTGTTAATTTACTAACTAATCCATCTTGTTAGGATGCCATAGAATGGGCAGAATAAAAGGGTAGTATCAGAGTTTTCTGAATGTCTTTTGAATCTGATCACTATATAGTATTCTTATATATTATATAGATTTGTAATA

Fln Alignment:

Contig1679___SLKMSKRVNMPPCTVPTFRAVVTCKSLFSSGQLNQALLLSIKPAALSLTRAYNALQGSPLVLQCAPAVGLMAFSVWGLEPSLQVIRHLILRRNANNWKRSSTYHIMTSYLQPILLWLGAILICRAFDPVVLSSETSQAVKQRLVNFVRSLSTVLAFAYCISSLIQQAQKFVMEHNDTQDTRHVGFNFIGKAIYTAVWVAAVSLFMELLGFSTQKWIXXXXXXXXXXXXXXREIFTNFLSSVMIHATRPFVVSEWIQTKIDGYEVSGTVEHVGWWSPTIVRGDDREAVHIPNHKFTVSVVRNLTQKSHWRIKTHLAISHLDVSKIGNIVADMRKVLAKNHQVEQQRLHRRVFLDNIDPENQALLILVSCFVKTPHFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKVYGDSETQNIPFEETI---IRRGVPKMIESP--KLTVEDKVKQRSLRSK----EELNTVHPKAVSVEAKGTEPGVSSNEN--TKPSSLDGKNIHKQKEKEKDRDHAPSDLQPKMLDAVQTSHTKPSLEGLDSMGLNSKDITLLRAAFEKPPVI
Q56X46-3____________NILLSNYLRRPICSVPCRTTAFRCHSFSASGK---AIEPAVKAVTVVLTKSHGLMQQFPFVYKLVPAVALLVFSLWGLVPFARQGRNILLNKNDNGWKKSGTYHVMTSYVQPLLLWLGALFICRALDPVVLPTEASKIVKDRLLNFVRSLSTVLAFAYCLSSLIQQTQKLFSETSNPSDTRNMGFQFAGKALYSAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLITLAGREILTNFLSSVMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAIHIPNHKFTVNVVRNLTQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPMVEQQRLHRRVFLENVIPENQALSILISCFVKTSHHEEYLGVKEAILLDLLRVISHHRARLATPIRTIRKMYTETDVENTPFGESMYGGVTSRRPLMLIEPAYKINGEDKSKSQNRAAKPTAEQENKGSNPKSKETSSPDLKANVKVGESPVSDTNKVPEETVAKPVIKAVSKPPTPKDTETSGTEKPKAKRSGGTIKSTKTDETDSSTSSASRSTLEENIVL

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
1060			33	66	0.997452
1061			33	66	0.997452
1062	66		33		0.997452
1133	25		75		0.996473
1134	25			75	0.996473
1136			25	75	0.996473
1322	12			87	0.992554
1323	12			87	0.992554
1324		12	87		0.992554
1325	12		87		0.992554
1334	87		12		0.992554
1339	11			88	0.923564
1340		33		66	1.0
1354	88		11		0.923564
1376	88		11		0.923564
1560		80		20	0.999996
1640	12			87	0.992554
1643			12	87	0.992554
1652			87	12	0.992554
1653			87	12	0.992554
1680			88	11	0.923564
1681			11	88	0.923564
1682			11	88	0.923564
1683	88		11		0.923564
1713	11	88			0.923564
1716	88			11	0.923564
1793	87		12		0.992554
1829		33		66	1.0
1907	16		83		0.994512
1985	20		80		0.995493
2013	40	60			1.0
2050		40	60		1.0
2316	90			10	0.90298
2335	20	80			0.999996
2482	16		83		0.994512
2485		83		16	0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
1987	2005	AGAAAG AGAAAG AGAAAG A	19

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain