SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1676

Length: 1645 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene1676

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	mitochondrial import inner membrane translocase subunit Tim17 [Arabidopsis thaliana] ref\|NP_973621.1\| mitochondrial import inner membrane translocase subunit Tim17 [Arabidopsis thaliana] sp\|Q9SP35.2\|TIM17_ARATH RecName: Full=Mitochondrial import inner mem	-	-	0.0	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Sma3	Mitochondrial import inner membrane translocase subunit Tim17	-	-	3.829e-13	-

Source	Gene names
Sma3	At1g20350; At1g20350/F14O10_3; At2g37410; At5g11690; CHLREDRAFT_182566; F14O10.5; GSVIVT00016660001; LOC_Os03g30200; MICPUCDRAFT_14281; MICPUN_93255; OJ1123_C12.122; OSJNBb0040H10.15; OSJNBb0059G13.13; OSTLU_7704; Os03g0415500; Os07g0604500; OsI_12043; Os

Source	GOs	Term	Type	Identity
Sma3	mitochondrial outer membrane	GO:0005741	Cellular Component	-
Sma3	mitochondrial inner membrane	GO:0005743	Cellular Component	-
Sma3	mitochondrial inner membrane presequence translocase complex	GO:0005744	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein transporter activity	GO:0008565	Molecular Function	-
Sma3	protein transport	GO:0015031	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	0.0	-
Sma3	Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24	IPR003397	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G37410.1	ATTIM17-2, TIM17, TIM17-2 translocase inner membrane subunit 17-2 chr2:15698119-15698850 REVERSE LENGTH=243	64%
RefSeq	Arabidopsis thaliana	NP_181277.1	mitochondrial import inner membrane translocase subunit Tim17 [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002329674.1	predicted protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADU1

Fln msg: your sequence is shorter than subject: 231 - 253

Fln protein: MGTPETSREPCPDRILDDVGGAFGMGAVGGSVFHLMKGIYNSPKGERILGGTQAVRLNAPRIGGSFAVWGGLFSAFDCSMVYVRQKEDPWNSIIAGAATGGFLQMRQGPRAATRSAIFGGVLLALIEGAGIMLNRVLSAQQQFPPMVEDVPNMQGPIPGFQGYGPIPANIAGPGAESAQAPGQSSSWFGGYKGLFEGKKEDSQHGSGSGKAEVLESFDQPSAPVPTFELK*

Protein Length: 232

Fln nts: GGAGCAAGTATAGTCCTATAAGGAAAGGTCTAGGTCTGTATCCGTTCACGAGAAAGAAAGGTCAAAGAAACTATCCTTTCCGCAAGTCACTCTTTTTGGTTTTTTGACAGATTTGAGAGACTTTCCGTTTATGCGTATTTGTTGATGTTATTACAGATATAATATTCCATCAGGAGCTCCTCCTTCGATACGGAGAAGGTAAGGAGATCCTAAATAGCGGAATAAGTGGGAATTATATACAGAAGGGTTTGGGCTTCCTCTGTTTTATATAAGCAGGTAAAGTCGTTTTAAGTTTGAAACCC_-_ATGGGCACGCCGGAGACATCTCGAGAGCCATGCCCCGACCGAATTCTGGACGATGTTGGTGGCGCCTTCGGCATGGGGGCGGTGGGAGGATCAGTCTTCCATTTGATGAAGGGAATTTACAATTCCCCCAAGGGTGAACGGATTCTTGGCGGTACGCAGGCCGTGAGGCTGAACGCACCTCGCATTGGCGGGAGCTTCGCAGTTTGGGGTGGTCTTTTCTCGGCTTTTGATTGCTCGATGGTGTACGTCAGGCAAAAAGAGGACCCCTGGAATTCTATAATTGCCGGAGCCGCGACCGGAGGGTTTCTCCAAATGCGTCAGGGACCTCGGGCCGCTACCAGGTCCGCTATATTTGGTGGCGTTTTGCTTGCTTTGATAGAGGGTGCGGGGATTATGCTGAATAGGGTTTTGAGTGCGCAGCAACAGTTTCCACCCATGGTTGAAGATGTGCCTAATATGCAAGGTCCTATTCCAGGATTTCAAGGCTATGGACCCATTCCTGCTAATATTGCGGGTCCTGGGGCCGAGTCAGCACAAGCCCCCGGGCAGAGTAGCTCCTGGTTTGGAGGATATAAAGGGCTTTTCGAGGGTAAGAAGGAAGATTCGCAGCATGGTAGTGGTAGTGGTAAGGCTGAAGTTTTGGAGAGTTTTGATCAGCCCAGTGCTCCGGTGCCCACTTTTGAGTTGAAGTGA___TTCGAGGGATTTTCGTATTCGTCTGCTTCAGCTACCAGCCTACCAGGTTTAGAAATGCAAGATGTACCATAAGATGCAGTTCGTGTGATACATTCAAATCAAAGAATGTGTTTTACTGTGTTCTCCCACAACTAATTTGATATATGATTATGCGCTTAATTACAGACTCATTACAGCCAAATTCACTGAATCAAAGGTCTGGGATATTCATCATTCCTACAGTTTTCTTCATGTGGCCATACAGGATGGACTGTGCACACATAATGTCCTTTCAATTCTGCACCTGTTTGAACTACTCTGAGTTTTAATCAGAGATACTTGTTGGATGGAATAAATTAGGTACTGTGTTACATGAGCATATTGCTTCCTTCAACCTTAAAGGGGTGAATGAAGATGCTCTTAGGTGCAGGTTTGTGGATGAGGCTTGGCATGCAGGTCCTACTTAATTTTTTATACTCATCACAATTTAGACAAAAGTAATTGCAAGTTACTAAAAGCAGTTTTCCAATCTCTCTCCCTGGCCCTCAAGTTACAGAAACCAGCAATATATTTATTTAAGGGACTTGATATTTTCTTTATGGATTGTGATTTATAATAAGTATTGCCATATTTCCTCGTTGTTGCTCGAGGGATGTTTACAGTAGATGACA

Fln Alignment:

Contig1676___MGTPETSREPCPDRILDDXXXXXXXXXXXXXXXHLMKGIYNSPKGERILGGTQAVRLNAPRIGGSFAVWGGLFSAFDCSMVYVRQKEDPWNSIIAGAATGGFLQMRQGPRAATRSAIFGGVLLALIEGAGIMLNRVLS------AQQQFPPMVEDVPNMQGPIPGFQGY--GPIPANIAGPG-AESAQAPGQ-SSSWFGGYKGLFEGKKE--DSQHGSGSG----------KAEVLESFDQPSA-PVPTFELK
D5ADU1______________MATPDHVREPCPDRILDDLGGAFSMGAVGGSVYHFIVGLKNSPRGERLHGGIQAVTLNAPRVGGSFAVWGGLFSAFDCGMVYLRQKEDPWNSIAAGAATGGFLQMRQGMGSATRSAIFGGILLALIEGAGILMNKMLAPPPAPKLEEQFPPMGMGYPGRGVPLPAGPAYTGGRPGTNQMNPNQQQGGSTMGEFSKDSTSGMSSEFVGHEERADDNGGFFSGWFGKKKTQEPKSENLEIFDSSSAPPVPNFDLK

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
145	71		28		1.0
163		28		71	1.0
166	28			71	1.0
222	66	33			1.0
238	90		10		0.90298
239			10	90	0.90298
240	90		10		0.90298
241		90	10		0.90298
253			66	33	1.0
607	10			90	0.90298
610		90	10		0.90298
925	83		16		0.994512
960	16		83		0.994512
1233		94		5	0.997984
1454		93		6	0.999453
1455	93		6		0.999453
1479			92	7	0.999532
1560		10		90	0.90298
1603	87		12		0.992554
1612		83		16	0.994512
1632		16		83	0.994512
1637	16		83		0.994512
1638	16			83	0.994512
1640	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain