SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1651

Length: 732 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene1651 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Lipoyl synthase 2, chloroplastic n=1 Tax=Populus trichocarpa RepID=LISC2_POPTR	-	-	5.0e-19	44%
FL-Next	sp=Lipoyl synthase, mitochondrial; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%
Sma3	Lipoic acid synthase-like protein	-	-	1.213e-08	-

Source	Gene names
Sma3	B1143G03.28; B1155G07.1; CHLREDRAFT_196092; F8L15_140; GSVIVT00002605001; LIP1p; LIPA2; MICPUCDRAFT_4033; MICPUN_86513; OJ1005_B11.11; OSTLU_31232; OSTLU_32294; Os01g0769100; Os05g0511500; OsI_03888; OsI_20590; OsJ_03597; OsJ_19166; P0665A11.4; PHYPADRAFT

Source	GOs	Term	Type	Identity
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	ferredoxin-NAD(P) reductase activity	GO:0008937	Molecular Function	-
Sma3	lipoate synthase activity	GO:0016992	Molecular Function	-
Sma3	iron-sulfur cluster binding	GO:0051536	Molecular Function	-
Sma3	lipoate biosynthetic process	GO:0009107	Biological Process	-
Sma3	photosynthesis	GO:0015979	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Lipoate synthase	IPR003698	-	-
Sma3	Ferredoxin thioredoxin reductase, alpha chain	IPR004207	-	-
Sma3	Elongator protein 3/MiaB/NifB	IPR006638	-	-
Sma3	Radical SAM	IPR007197	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G08415.1	Radical SAM superfamily protein chr5:2710983-2713101 REVERSE LENGTH=394	4.0e-23	71%
RefSeq	Arabidopsis thaliana	NP_568196.1	lipoyl synthase [Arabidopsis thaliana]	5.0e-23	71%
RefSeq	Populus trichocarpa	XP_002329366.1	predicted protein [Populus trichocarpa]	1.0e-23	47%

Full-Lengther Next Prediction

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
525	10			90	0.90298
527		10	90		0.90298
528		10		90	0.90298
529	10		90		0.90298
532		90	10		0.90298
533	90			10	0.90298
534		10	90		0.90298
539		10	90		0.90298
566	87	12			0.992554
572		14	85		0.993533
573		14	85		0.993533
575			85	14	0.993533

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain