SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1646

Length: 1512 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene1646

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=U-box domain-containing protein 62; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	51%

Source	Gene names
Sma3	At2g40640; At5g05230; GSVIVT00029454001; K18I23.3; OSJNBa0094J08.30; OsI_14060; OsJ_13100; PHYPADRAFT_166531; POPTRDRAFT_1108254; PUB62; PUB63; RCOM_0690100; RCOM_1138920; T2P4.1; T7D17.18; VITISV_024206;

Source	GOs	Term	Type	Identity
Sma3	ubiquitin ligase complex	GO:0000151	Cellular Component	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-
Sma3	protein ubiquitination	GO:0016567	Biological Process	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	U box domain	IPR003613	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G05230.1	RING/U-box superfamily protein chr5:1551593-1553543 FORWARD LENGTH=363	51%
RefSeq	Arabidopsis thaliana	NP_196142.3	U-box domain-containing protein 62 [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002325928.1	predicted protein [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q6DBN5

Fln msg: your sequence is shorter than subject: 296 - 363

Fln protein: AGGGVAASSGFYRDGLVKEPPALPRENNNSSATANTASLHEHHQARIPPGLHHEGTLPVASVPDADNYYTQLLQSTASLAPKDAGVDEGGAFGERKGTTASTESSESSLRIILSDPLTGVLMDDATILTCGHSFGSGGLQHVLEARACITCGQPVANDSVAPNHALRAVVQAFRREEEFQSMTSKSAKRRRDKFEQVLEKTGYSDPMSMDCSRGKGVQFPFVVGDRVVIKGNKRTPERFVGREAVITTQCLNGWYVVKTLDNAESVKLQYRSLMKVGDHQSSSELSQKALAPSWL*

Protein Length: 297

Fln nts: GCAGGAGGAGGGGTGGCTGCATCCTCTGGTTTTTATAGAGATGGATTGGTGAAGGAACCTCCTGCACTGCCCAGAGAAAATAATAACAGCAGCGCCACCGCGAACACGGCCTCTTTACATGAACATCACCAAGCAAGGATTCCCCCTGGCTTGCACCACGAGGGGACCCTTCCAGTTGCCTCTGTGCCCGACGCCGATAACTATTATACTCAATTGCTGCAATCAACCGCGTCACTTGCTCCGAAGGACGCGGGAGTGGACGAGGGAGGTGCTTTCGGAGAAAGGAAAGGCACGACCGCAAGCACAGAGTCATCAGAATCCTCGCTGCGGATTATTCTATCCGATCCTCTCACAGGTGTACTTATGGATGATGCGACAATATTAACTTGTGGGCACTCCTTTGGAAGCGGTGGTCTCCAACATGTACTTGAAGCGCGGGCCTGCATTACTTGTGGTCAGCCAGTTGCAAATGATTCTGTAGCTCCTAACCATGCTCTTAGAGCAGTAGTGCAGGCCTTCAGGCGGGAAGAGGAATTTCAATCAATGACATCAAAATCAGCCAAAAGGAGGAGAGACAAGTTTGAGCAGGTTTTGGAGAAAACTGGCTATAGTGATCCAATGTCCATGGATTGTTCTAGAGGTAAAGGGGTTCAGTTCCCATTTGTTGTTGGTGATCGAGTGGTTATTAAGGGAAACAAGCGAACTCCAGAACGATTTGTTGGTCGTGAGGCTGTTATCACAACTCAGTGTTTGAATGGATGGTATGTAGTAAAAACTTTAGATAATGCGGAGAGTGTCAAGCTGCAATATAGGTCTCTTATGAAGGTTGGGGATCATCAATCTTCAAGTGAACTTTCTCAGAAGGCTTTGGCACCAAGCTGGCTATGA___TCTCATAGGGTATCTGATGATAATGAAATCCTTGGGGAGTGTAATATTAGTTTCGACTATGCAACAAAGGTAGTGGTGAAAGCGACAAATGTTTTCTAGTTTATCTTTAACTTTGCTGTTAAGATGGCGTGCATCAAGGGCATGCTTGTGGGAAACACTTTCTTGCAATCACCACTGCGGCTAGCCATACGTGTTCCACCAACAATGTTGAAGAGGCCTTTGTTATCATTCGTCTGGTGCTTATGTAATATTTTATCAGTTCAAATATATGACTTTGGTTTTGTAAATTGCCCCTAAGCTGTATTGAGTCTTAGATTTTCTATTTTATTTCAGTTGAATGCATCCTCCATTATGTCCAAAATTTTCTCTGTAAGTGCTGCCAATGAAATCAGATCGATCCTTGTATTTATCTCACAAAGAGTTGTTTCCGCCTTATATAGAAAGTTGAAGATACTCTATTTTGATAGAATGTGCCAAGTCAAAAATATTATTTTCTTTTTGCTTGGCATCGCTCTTTCTTTAGTCACGAGCATGCTGATTCTGATGTCTGAATTGTGACTGAGCTAGTTACTTCTTTTCTTAGGTCATCATATTTATTAGTTTCCATATTGGAATTTTCAATTC

Fln Alignment:

Contig1646___YYTQLLQST-ASLAPKDA----GVDEGGAFGERKGXXXXXXXXXXXLRIILSDPLTGVLMDDATILTCGHSFGSGGLQHVLEARACITCGQPVANDSVAPNHALRAVVQAFRREEEFQSMTSKSAKRRRDKFEQVLEKTGYSDPMSMDCSRGKGVQFPFVVGDRVVIKGNKRTPERFVGREAVITTQCLNGWYVVKTLDNAESVKLQYRSLMKVGDHQSSSELSQKALAPSWL
Q6DBN5______________YYSQHFKTVEASFVSRNEESSIAADNGCDFSGRRDLSSSSSNSIESLRTILSDPTTGSLMADAMILPCGHTFGAGGIEQVKQMKACCTCSQPVSEDSITPNLTLRVAVQAFCREENSQS--NHPSKRKREGFDQ--ERRAFGVTNHSGRSRNKSNHFPFAVADRVIIKGNKRTPPRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAKAPEDPSAKATPNK-MVSNWL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain