SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1634

Length: 1532 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene1634

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Papain family cysteine protease n=3 Tax=Arabidopsis RepID=Q8VYS0_ARATH	-	-	0.0	69%
FL-Next	sp=Cysteine proteinase 15A; Pisum sativum (Garden pea).	-	-	0.0	52%
Sma3	Cysteine proteinase	-	-	6.652e-33	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on peptide bonds (peptide hydrolases), Cysteine endopeptidases.	EC:3.4.22.-	-	2.739e-10	-
Sma3	Cathepsin H.	EC:3.4.22.16	-	3.136e-06	-

Source	Gene names
Sma3	AT4g16190; At2g21430; At3g54940; At4g16190; At4g39090; CCP1; CM0216.500.nc; CM0216.510.nc; CP; CP2; CP3; CP4; CP5; CYS3; CysP; F28P10.80; F3K23.19; GSVIVT00014512001; GSVIVT00014514001; GSVIVT00014516001; GSVIVT00018115001; GSVIVT00035933001; GSVIVT000368

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	cysteine-type endopeptidase activity	GO:0004197	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase C1A, papain C-terminal	IPR000668	-	-
Sma3	Peptidase C1A, papain	IPR013128	-	-
Sma3	Proteinase inhibitor I29, cathepsin propeptide	IPR013201	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G54940.2	Papain family cysteine protease chr3:20354402-20356127 FORWARD LENGTH=367	69%
RefSeq	Arabidopsis thaliana	NP_567010.5	Papain family cysteine protease [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002316398.1	predicted protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P25804

Fln msg:

Fln protein: MFLLVISTQISFSLGLDDGTGSENGFIAQVTDKFHGENLLNLCSKTLFDKFIVEHGKVYSTVEEYARRLRIFEKNLLKAAENQALDPTAVHGITPFSDLTEFEFESRYTGLLSVPQGLVNDAPTVNVLPVDDLPANFDWREKGAVTEVKTQGNCGSCWAFSTTGVIEGANFLATGKLLNLSEQQLIDCDHKCDPSNNKACDNGCHGGLMTNAYNYLMEAGGIEEAKNYPYTGIPGDCKFNPDLAAVKVINFTTIPLDEKQIAAHLVKHGPLAVGLNAAFMQTYIGGVSCPLICSKRFINHGVLLVGYGHKGFALLRLGYRPYWIIKNSWGERWGEHGYYKLCRGHGECGMNKMVSAVIPAR*

Protein Length: 363

Fln nts: TGGATCAGACACAATGAGTCGTTAATTTTCGCATTCGGAGGCATGGCGGGGAATAATACCAATCCCCTGACCTTGAATGGCACTGC_-_ATGTTCTTACTTGTAATTTCCACTCAAATCTCTTTTTCCCTGGGCCTCGACGATGGTACGGGTTCAGAAAACGGGTTCATTGCACAGGTGACTGACAAATTTCATGGCGAAAATCTATTAAATTTGTGCTCAAAGACGCTCTTTGATAAGTTCATCGTTGAGCATGGGAAGGTGTATTCTACTGTAGAAGAATATGCTCGTAGGCTGCGGATATTCGAAAAGAATTTACTCAAGGCAGCCGAGAACCAAGCCTTAGATCCCACGGCCGTGCACGGCATTACTCCCTTCTCGGATCTAACGGAGTTCGAGTTCGAATCTCGTTACACAGGACTTCTCAGCGTTCCACAGGGTTTAGTGAACGACGCCCCGACGGTCAATGTTTTGCCGGTCGACGATCTGCCTGCCAATTTTGACTGGAGGGAAAAAGGCGCTGTGACAGAGGTGAAGACGCAGGGCAACTGCGGTTCTTGCTGGGCATTCAGCACTACAGGAGTTATTGAAGGAGCAAACTTTCTTGCCACTGGAAAGCTTCTTAACCTCAGCGAGCAGCAGCTCATAGACTGCGATCACAAGTGTGATCCTTCGAATAACAAAGCTTGTGATAATGGCTGCCATGGGGGCTTAATGACCAATGCATACAATTACCTAATGGAAGCTGGAGGCATAGAGGAAGCGAAAAACTATCCATACACTGGGATTCCAGGAGATTGTAAGTTCAACCCTGATTTGGCAGCTGTTAAAGTTATAAATTTCACTACCATTCCTCTTGACGAGAAGCAAATTGCAGCTCACCTTGTGAAGCACGGACCTTTGGCCGTTGGACTTAATGCAGCTTTCATGCAAACATATATTGGGGGCGTCTCCTGTCCTCTAATTTGTAGCAAGAGATTTATAAACCATGGAGTGTTGCTGGTGGGGTATGGACATAAAGGATTCGCACTGCTGAGATTGGGGTATAGACCTTACTGGATCATCAAGAACTCGTGGGGTGAACGATGGGGAGAGCACGGTTATTACAAGCTTTGTCGTGGGCATGGTGAATGTGGAATGAACAAAATGGTATCTGCTGTGATACCAGCAAGGTGA___AAACAGATAAAGTTCTGGCACATCATGTTCGATGTGCAGCTGTAGAGTTTTATATATCCCTCTGTTAAAATTACGTTGCATTATCTGTTGGCTATTACGTTCAATAGCGCCTTAAACTATTTCAGTCTTTATGCCATCCCATGAAGATGTAGATGTATTTGTATATTTGTGTACACCATATACACTTAATATTTTTGTACACCGTTACTATTAGATTTTGACGGTTTTGATGGTTTTGATGTCTTTAGATAGTGGCTATGTTAAAAAAATTAATGTAATCATGATTAGGATTGGGGATTGGTGTGGCTGGTTGATCCGATTCAGGTCGGATACGATTTCAAGTGATTTACATCGATATAA

Fln Alignment:

Contig1634___FLLVISTQISFSLGLDDGTGSENGFIAQVTDKFHGENLLNLCSKTLFDKFIVEHGKVYSTVEEYARRLRIFEKNLLKAAENQALDPTAVHGITPFSDLTEFEFESRYTGLLSVPQGLVNDAPTVNVLPVDDLPANFDWREKGAVTEVKTQGNCGSCWAFSTTGVIEGANFLATGKLLNLSEQQLIDCDHKCDPSNNKACDNGCHGGLMTNAYNYLMEAGGIEEAKNYPYTGIPGDCKFNPDLAAVKVINFTTIPLDEKQIAAHLVKHGPLAVGLNAAFMQTYIGGVSCPLICSKRFINHGVLLVGYGHKGFALLRLGYRPYWIIKNSWGERWGEHGYYKLCRGHGECGMNKMVSAVIPAR
P25804______________FLFALFLFAAVATAVTDDTNNDDFIIRQVVDN-EEDHLLN--AEHHFTSFKSKFSKSYATKEEHDYRFGVFKSNLIKAKLHQNRDPTAEHGITKFSDLTASEFRRQFLGLKKRLR-LPAHAQKAPILPTTNLPEDFDWREKGAVTPVKDQGSCGSCWAFSTTGALEGAHYLATGKLVSLSEQQLVDCDHVCDPEQAGSCDSGCNGGLMNNAFEYLLESGGVVQEKDYAYTGRDGSCKFDKSKVVASVSNFSVVTLDEDQIAANLVKNGPLAVAINAAWMQTYMSGVSCPYVCAKSRLDHGVLLVGFGKGAYAPIRLKEKPYWIIKNSWGQNWGEQGYYKICRGRNVCGVDSMVSTVAAAQ

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
928	80		20		0.999996
931		80		20	0.999996
932	77		22		0.999999
934	77	22			0.999999
936	77			22	0.999999
938	77		22		0.999999
939			22	77	0.999999
940	75	25			1.0
942			16	83	0.999991
943		9	72	18	0.999994
944		18	81		0.999994
945	18		72	9	0.999994
946		16	83		0.999991
947	8		75	16	0.99999
949	25	8	66		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain