SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1632

Length: 2655 nt

UniGene Fasta

>sp_v3.0_unigene1632
TCATTTCTCTCCAGCCACGACTTCTCGCATTCTGACGCCTTTTAGTGCATGAGAGCATCCTTATTTGATCGAATTCAGGCTTTTAAAGCCAGCTTTTACTCTTGGGTTCCCTGGAATCTACTAGCTTTTTATACATTAGTGCCTTCAAAATACCATGGTCCAATCAATTTTTGGTATATTATAATGGCAGGCTACGTGGGTGTATTGGTTTCAGATCCTTGGCTTCAGAGCCAGTTCGCCCAGACAGAACTTCGAACTTTAAAATCACAGTATGCATCCATGAAGAAGGAGAAGGGCGAATTAACTGCAGGGGATTTGAGTTCTGGAATGACTAAACTGAAAGCTTTTGAGGAGTTGCTCAGCGAGGAGGACGTAGGGGCTGTTGTGGCCGAATACCATTCAAATGCAGAAGAGTTGGTGGATTTCGAAGGTTTTCTACGGATGTATCTTAATTTGCAGACACTGGCAAATAAAAAATTAGGCGGTTCCAAGAACAAATCTGCATTTCTGAAGAATGCCACAACCACCTTGCTTCACACAATTGGTGAATCTGAGAAGGTGGCATATGTTGCTCATATCAATAGCTATCTTAGAGATGATCCAGTGATGAAAAGATACCTCCCAATTGATCCGATGACAAATGATCTCTTTGATATAGTGAAAGATGGCATTCTTCTATGTAAATTGATCAATGTGGCTGTTCCTGGTACCATTGATGATCGAGCAATAAATACGAAACCAAAGCTTAATCCATGGGAAATAAATGAAAATCATACACTTTGTCTCAATTCATCAAAGGCTATTGGATGCACAGTAGTAAATATTGGAACACAGGACTTAGTTGAAGGGCGGTCATATCTTGTACTTGGCTTGATATCTCAAATTATCAAGATTCAACTTTTAGCGGACTTAAGTTTGAAGAAAACACCAGCACTTGTAGAGCTAGTTGATGACAGTAAGGACGTGGAGGAGCTCATGAATCTACCGCCTGATAAGGTTTTGCTGAGATGGATGAACTTTCATCTTCAAAAAGCAGGTTACAAGAGAAATGTTACAAATTTCTCTTCAGATGTGAAGGATGCAGAGGCCTATTCTGTCCTGTTAAATGTCCTCGCACCAGAGTATTGTTGTCTGGACACTATGAATACAGAGAACCCTATGGAAAGGGCAAAACTAGTTCTTGCACAAGCAGAAAAAATGGACTGTACAAGCTATTTGTCTCCAAAGGATATCTTGGAAGGCTCTCCAAATCTCAATCTTGCCTTTGTTGCTCATCTTTTCCATAAAAGGAGTGGATTATCATTGGATCCAAACAAGGTATCATTTGCAGAGATGATGGAAGACGATGTGCAAGTTTCTAGGGAAGAAAGAGCTTTCCGCTTATGGATCAATAGTCTTGGACATTGACACATTTGTCAACAATCTTTTTGAAGATGTTAGGAATGGATGGGTTCTGCTTGAAGTACTTGACAAAGTGGCCCCAGGGATGGTAAATTGGAAGCAAGCAAGCAAGCCTCCAATAAAAATGCCATTCAGGAAAGTAGAAAATTGTAATCAAGTAATCAGAATTGGAAAGCAACTGAAATTTTCACTTGTTAATGTGGCTGGGAATGACATTGTGCAAGGAAATAAAAAGCTCATTCTTGCATATTTGTGGCAATTGATGCGGTACAACATGCTTCAGCTGCTCAGAAATCTCAGGCTGCGTTCTAGTCATAAGGAGATATCGGATCTTGAGATAATGAATTGGGCAAATGCAAAAGTTAAAAATACAGGCAGAGCTTCTCAAATGGAGAGCTTCAGGGACAAAAAGTCTTGCAAATGGAATATTTCTCCTTGAATTACTGAGTGCTGTGGAACCTAGGGTTGTGAACTGGTATATTGTCACAAAAGGCGAGAATGAGGAAGAAAAGAGACTGAATGCAACCTATATAATCAGTGTGGCAAGGAAGCTTGGTTGCTCAGTTTTCCTTCTACCTGAAGACATTGTTGAGGTTAATCCTAAAATGATACTGATATTGGTTGCAAGCATTATGCTTTGGAGTCTTACAAAACAAACCAGTGAAGATGTGGGAATTTCAGACAGTGAAAATGGAAGTGTAACCGGCAGTCTATCAAATCTTGCCCTTGATGATAGTACTTCAGAGGCTTCTTTGCCACTTGATAATGGAAGTGAATCGGCAAGTGAACATTCCTTTGAGGAGAGTAGAGCAGAGTAGAGGTGATTAATGTTTAATTGATTTTGCTTTCGCCAAAAATGTTTCAAATTTTTTTGACTACAAATCATAAAGCTTGGCCATGGTTCTGGGCCTTGCTTGGAAAAACACACTACCCGGTAAGATATTTTTGTACCAATATTTGGAATCTCACATGGACTATGTAATCTAGTTCCAAAGAGTTCAACAAAATGTGTTTGAATTCCACAAAAGAAAAGGGAAATTCACTCAACTTTTGTAAAGTAACATGATCATCTTGCTGATCATTTTGCATATCGTTCAAGGCTGATTCTTATCACCACTAGGAGCCAGCAGATGATTAATGAGCACAGTAGTGAGTAAGGTGTAACTCATCTGGATATTGAACGATCCATAGTATTAATTGCTTTTTAAACGCGAGTCATTTCACTTTTTTTTTTATATGACATTCAACAGTTTC

Ace file of the UniGene sp_v3.0_unigene1632

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	fimbrin-like protein 2 [Arabidopsis thaliana] sp\|Q9FKI0.1\|FIMB2_ARATH RecName: Full=Fimbrin-like protein 2 dbj\|BAB09267.1\| fimbrin [Arabidopsis thaliana] gb\|AAK76454.1\| putative fimbrin protein [Arabidopsis thaliana] gb\|AAN13139.1\| putative fimbrin protei	-	-	0.0	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Sma3	Fimbrin, putative	-	-	9.399e-13	-

Source	Gene names
Sma3	AT4G26700; At2g04750; At4g26700; At5g35700; At5g48460; At5g55400; B1075D06.5; F10M23.40; FIM1; FIM2; FIM3; GSVIVT00010397001; GSVIVT00010618001; GSVIVT00012772001; GSVIVT00025868001; GSVIVT00027232001; MTE17.11; MXH1.5; OJ1008_D06.3; OJ2056_H01.36; OSJNBb

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	cytoskeleton	GO:0005856	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	actin binding	GO:0003779	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Actinin-type, actin-binding, conserved site	IPR001589	-	-
Sma3	Calponin homology domain	IPR001715	-	-
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Membrane bound O-acyl transferase, MBOAT	IPR004299	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G35700.1	FIM2, FIM5 fimbrin-like protein 2 chr5:13872833-13876432 REVERSE LENGTH=687	66%
RefSeq	Arabidopsis thaliana	NP_198420.1	fimbrin-like protein 2 [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002317323.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A879

Fln msg:

Fln protein: MQKLKIQAELLKWRASGTKSLANGIFLLELLSAVEPRVVNWYIVTKGENEEEKRLNATYIISVARKLGCSVFLLPEDIVEVNPKMILILVASIMLWSLTKQTSEDVGISDSENGSVTGSLSNLALDDSTSEASLPLDNGSESASEHSFEESRAE*

Protein Length: 156

Fln nts: TCATTTCTCTCCAGCCACGACTTCTCGCATTCTGACGCCTTTTAGTGCATGAGAGCATCCTTATTTGATCGAATTCAGGCTTTTAAAGCCAGCTTTTACTCTTGGGTTCCCTGGAATCTACTAGCTTTTTATACATTAGTGCCTTCAAAATACCATGGTCCAATCAATTTTTGGTATATTATAATGGCAGGCTACGTGGGTGTATTGGTTTCAGATCCTTGGCTTCAGAGCCAGTTCGCCCAGACAGAACTTCGAACTTTAAAATCACAGTATGCATCCATGAAGAAGGAGAAGGGCGAATTAACTGCAGGGGATTTGAGTTCTGGAATGACTAAACTGAAAGCTTTTGAGGAGTTGCTCAGCGAGGAGGACGTAGGGGCTGTTGTGGCCGAATACCATTCAAATGCAGAAGAGTTGGTGGATTTCGAAGGTTTTCTACGGATGTATCTTAATTTGCAGACACTGGCAAATAAAAAATTAGGCGGTTCCAAGAACAAATCTGCATTTCTGAAGAATGCCACAACCACCTTGCTTCACACAATTGGTGAATCTGAGAAGGTGGCATATGTTGCTCATATCAATAGCTATCTTAGAGATGATCCAGTGATGAAAAGATACCTCCCAATTGATCCGATGACAAATGATCTCTTTGATATAGTGAAAGATGGCATTCTTCTATGTAAATTGATCAATGTGGCTGTTCCTGGTACCATTGATGATCGAGCAATAAATACGAAACCAAAGCTTAATCCATGGGAAATAAATGAAAATCATACACTTTGTCTCAATTCATCAAAGGCTATTGGATGCACAGTAGTAAATATTGGAACACAGGACTTAGTTGAAGGGCGGTCATATCTTGTACTTGGCTTGATATCTCAAATTATCAAGATTCAACTTTTAGCGGACTTAAGTTTGAAGAAAACACCAGCACTTGTAGAGCTAGTTGATGACAGTAAGGACGTGGAGGAGCTCATGAATCTACCGCCTGATAAGGTTTTGCTGAGATGGATGAACTTTCATCTTCAAAAAGCAGGTTACAAGAGAAATGTTACAAATTTCTCTTCAGATGTGAAGGATGCAGAGGCCTATTCTGTCCTGTTAAATGTCCTCGCACCAGAGTATTGTTGTCTGGACACTATGAATACAGAGAACCCTATGGAAAGGGCAAAACTAGTTCTTGCACAAGCAGAAAAAATGGACTGTACAAGCTATTTGTCTCCAAAGGATATCTTGGAAGGCTCTCCAAATCTCAATCTTGCCTTTGTTGCTCATCTTTTCCATAAAAGGAGTGGATTATCATTGGATCCAAACAAGGTATCATTTGCAGAGATGATGGAAGACGATGTGCAAGTTTCTAGGGAAGAAAGAGCTTTCCGCTTATGGATCAATAGTCTTGGACATTGACACATTTGTCAACAATCTTTTTGAAGATGTTAGGAATGGATGGGTTCTGCTTGAAGTACTTGACAAAGTGGCCCCAGGGATGGTAAATTGGAAGCAAGCAAGCAAGCCTCCAATAAAAATGCCATTCAGGAAAGTAGAAAATTGTAATCAAGTAATCAGAATTGGAAAGCAACTGAAATTTTCACTTGTTAATGTGGCTGGGAATGACATTGTGCAAGGAAATAAAAAGCTCATTCTTGCATATTTGTGGCAATTGATGCGGTACAACATGCTTCAGCTGCTCAGAAATCTCAGGCTGCGTTCTAGTCATAAGGAGATATCGGATCTTGAGATAATGAATTGGGCAA_-_ATGCAAAAGTTAAAAATACAGGCAGAGCTTCTCAAATGGAGAGCTTCAGGGACAAAAAGTCTTGCAAATGGAATATTTCTCCTTGAATTACTGAGTGCTGTGGAACCTAGGGTTGTGAACTGGTATATTGTCACAAAAGGCGAGAATGAGGAAGAAAAGAGACTGAATGCAACCTATATAATCAGTGTGGCAAGGAAGCTTGGTTGCTCAGTTTTCCTTCTACCTGAAGACATTGTTGAGGTTAATCCTAAAATGATACTGATATTGGTTGCAAGCATTATGCTTTGGAGTCTTACAAAACAAACCAGTGAAGATGTGGGAATTTCAGACAGTGAAAATGGAAGTGTAACCGGCAGTCTATCAAATCTTGCCCTTGATGATAGTACTTCAGAGGCTTCTTTGCCACTTGATAATGGAAGTGAATCGGCAAGTGAACATTCCTTTGAGGAGAGTAGAGCAGAGTAG___AGGTGATTAATGTTTAATTGATTTTGCTTTCGCCAAAAATGTTTCAAATTTTTTTGACTACAAATCATAAAGCTTGGCCATGGTTCTGGGCCTTGCTTGGAAAAACACACTACCCGGTAAGATATTTTTGTACCAATATTTGGAATCTCACATGGACTATGTAATCTAGTTCCAAAGAGTTCAACAAAATGTGTTTGAATTCCACAAAAGAAAAGGGAAATTCACTCAACTTTTGTAAAGTAACATGATCATCTTGCTGATCATTTTGCATATCGTTCAAGGCTGATTCTTATCACCACTAGGAGCCAGCAGATGATTAATGAGCACAGTAGTGAGTAAGGTGTAACTCATCTGGATATTGAACGATCCATAGTATTAATTGCTTTTTAAACGCGAGTCATTTCACTTTTTTTTTTATATGACATTCAACAGTTTC

Fln Alignment:

Contig1632___KSLANGIFLLELLSAVEPRVVNWYIVTKGENEEEKRLNATYIISVARKLGCSVFLLPEDIVEVNPKMILILVASIMLWSLTKQTSEDVGI--SDSENGSVTGSLSNLALDDSTSEASLPLDNG
D5A879______________KSLTNGIFFLELLTAVEPRVVSWNVVTKGETEQEKKLNATYIISVARKMGCSIFLLPEDIVEVNPKMILTLTASIMLWSLSNQTGEDTSTMSSELENGLASASISSVD-NDSASQASLPPDNG

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
291	33		66		0.997452
424	12		87		0.992554
427			12	87	0.992554
622	12	87			0.992554
637	85	14			0.993533
738	20		80		0.995493
739	80	20			0.995493
741	80			20	0.995493
742		80		20	0.995493
1268		20		80	0.995493
2016		90		10	0.90298
2017			10	90	0.90298
2019	90		10		0.90298
2035		11		88	0.923564
2036	11			88	0.923564
2037	88			11	0.923564
2153			14	85	0.999981
2156			15	84	0.999986
2160	15	84			0.999986
2167	84		15		0.999986
2168		15		84	0.999986
2172		14	85		0.999981
2174	78	14		7	0.999974
2176		14	85		0.999981
2587	66	33			0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
1499	1514	AAGC AAGC AAGC AAGC	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain