SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1628

Length: 3275 nt

UniGene Fasta

>sp_v3.0_unigene1628
TACTCACTGCCTTGGCTTCACTTCACTCATAGGGGTGGACGAAAGGAAGCGAGGGTCGGGGTCAGGGTCCGGGTCGCTTTTCCAGTTGTCCTCTCTTTTTCAATCCCGACCTGGACTTGTACCCGCTGTGTCGATCATTTACATTCTCCCTCTTTTAATTTTTTCACAGAGAGGATTGAACTGAAAATAAAATGAAAATGAATGCTTTTTTTCCGCCCATGTGATAATGGTGGACTGGACGACTCTTCCTCCACGCTCAGCCCCTGGGAAAGTGTCAATGGCGTGGTGCGCGTGTAAGAGAAGGTACTGAACGAACGACATCGTCCAGCCCGCCACTCGCCGGATATCGAAATCACGACCTTTTTGTCAACTAACGGCTGTTGAAAGAATGCAGCAGCCGCAGCTGCCATCAGCGAGTGGACAGTATGGTGTGCCCGAGGTTCCTCAGTTCGTCGGAGGCCGTTCTTCTCACGGTCATATGCTCGGGATCTCCCACGACATGCCGCACCACGAACCACCGCAATCACAGCACTTGCAGCAACAGCTTTTGCAGCAGTCTCATTCTCAGCCCCCGCAGCAGCAGCAGCAGCAGCAGAGTGTTAATCTGCAGGTTAAAACGGATTCTTTAACCGAGATCCAGTCCTCGGCTGCCACCAGACCGCCTCCGCGGACTACCGATGGCTTTGAACAGATGGTGCCGAACAGCGCTTTCGGTGACGACGAGGTGCTCGCAGCGGGTGAAGATGGAGATAGAGGGGCGGTCGGCAGCCGCTGGCCCAGACAGGAAACCCTCGCTCTACTTAAAATCCGATCCGAGATGGACGCTTCGTTTAGGGACGCTAGCCTCAAAGGGCCTCTATGGGAAGAAATTTCACGGAAGCTCGCAGACCTAGGTTATCAGAGGAGTGCCAAGAAATGCAAAGAAAAGTTCGAAAACGTTCAGAAGTATTATAAACGAACTAAAGACGGAAGAGCTGGCCGGCAGGATGGTAAAAGCTATAGATTCTTCAGCCAGCTGGAAGCTCTCCATAATCATAACAACAACAGCAATAATAATCTTCACAACAGCAGCAGCATTGGCAATAACACTAATAATGCAAGAAACAATCATAGCCATGCACTGAGCAGCGGGGCCGGAGCACCAGTCAGGCCACAGCCTACCGCTCCTACTGTGCTCACCAACAATGATATTGCCGGTGCCGGTGCCAGTGCCAGTGCCGGGGAATTGAACAGAAATAGCGGCGCCGCTACTAATGCCATCGTATTGAAGCAAAGCGCAGATTATACTGCCGGTAATTTAAGTTTCTCGTCCGAATCGTCCGAGGACGAAGAATTTGATGAACAGACGGACAGTCGGAAAAGAAAGCGGGGCTCCAGCACCACAGAGAAAATGATGCTGTTTTTCGAGCAATTGATAAAGCAAGTAATGGAGAGGCAGGAGAGCATGCAGCAGAAGTTTCTGGAAACTATAGAGAAGCGCGAGCAAGACAGAATGATCCGCGAGGAGGCTTGGAAAAGGCAAGAAATGGCGCGATTGAACAGAGAACATGAGATTATGGCCCAGGAACGAGCCCTTGCGGCTTCCAGAGATACTGCATTCATTGCATTGTTTCAGAAAATTACAGGCCAGAATTTCCAGGCTCCTGTTATGGCTCCTGTGGCACAGTCGACAACGACTATCAATAATACTGTGCCATTGCCGACTTACGAAACGCATCCAGCCCGGGATGTTGTTACTCCTCATCATCAGCGGGATACTACTCAAGATGTCAATGTAGACCAAACGGAATTGACCTTTGATCCCAACAGCAGCAGGTGGCCCAAGCCTGAAGTTCATGCACTGATAAAGCTGAGAACCGGACTGGAGCCCAGATACCAAGATGCCGGGCCCAAAGGCCCGCTGTGGGAAGAAATCTCTGCTGGAATGGCCCGCCTCGGCTACAGCCGCAGCTCCAAGAGGTGCAAGGAGAAATGGGAAAATATCAACAAATACTACAAGAAAGTTAAAGAAAGCAACAAGAAACGGCCGGAAGATGCAAAGACGTGTCCTTATTTTCACCAGCTGGAACAATTATACAAGAAAAAGATCTTCGGCAATGCAGCCAAGCAAGAACACCCGAACCAGGAGGACGCCCGCATCGAGCAATTACCCGGCGGAAACAACAACAATAGCGACAGAAACGAGCGCCAAAGCACAGACGGCATCCTGGTCATTGTGCCGCCTCCAGGATCGTCATCGGACGTCAAGAACAGCAATTCAAACCCTGACAATAACGGTCCACCGATTCCTTCGAGCAGCGGAGCAGTGCAGACAACGTTCTTTACAAGCCCGGAGAATGGAACCGGCGCCGATCAGCGAGCTCTGAAGAAGCCAGAAGGCCTTGTGATGGACGTGATGGACATGGACGACATGCGGTCCGCGCCGCAGCACCAACAGCAATCCGTTGTAGACGATTACGATGATGATAAAATGGACACAGAAGAAGAAGAAGAAGACAGCGACAATAACAGCGAGCAAGAACATCATAATATTATTCCTATTCCTACTATATCCACTACTCACGACAGGCAGCCGACGACGGTGGTCGATCATCTACCGTTTGCCGAGTTTGTTCACGAGAGCCGAACGAGCACTACAGCCGCCGCCACAGCTGCCAGTTCCTTCATGGCCATGGTCCACCGCTTCGCTACAGCCGAAGCTCCCGAGTTCAAAACCTCTAAAGCATAAACCGCCGCCTAAGATTATAAATTATCATCACTAGCGGCAGCAGACTGAGCTTGTGTACCATATGTACCATTAGCAGAGGTTTAGGTTTAAGGTTGGGTTGGGATATTGGCCATGAAGGCATTTCATCTTTATTGTCATCAAGCAAATAACCCTAATAAATTTGCGCTGCCATTGTTGCAGGGACTGTTACAGGGAAGTAGTTTTTTTGGTTAGCATATTTATTTATTTATTTATTTGTGGAATAAAATCTGATGTGTGAAAGGTCGTTTCGGCTGCTGCAATCGACAAAATCGAGTTATAAATGATGCAGTGGGCATATGGCCCTCTGACTTCACCTCTCTGTGGACTGTACAGACAGAGAGCTGGTAGGCCTCTCATATTTTCCTTCTGTAATCTTATTGACTTCATTATGAACCCAGAAACAAAATCCAGCTGTGTTGCACCGTCGAGTTTTACCACTTGTTGTAAAGAATCTTTCCATTATTTTATTAACCGCGTCTTTCTGTCATAGAGCCTGACACTGGCCAAACTGGTTCATGTTCTTTAT

Ace file of the UniGene sp_v3.0_unigene1628

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein GT-2-like 1 [Arabidopsis thaliana] gb\|AEE31573.1\| protein GT-2-like 1 [Arabidopsis thaliana]	-	-	0.0	41%
FL-Next	sp=Trihelix transcription factor GTL1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	43%
Sma3	GT-2 factor	-	-	3.703e-12	-

Source	Gene names
Sma3	At1g33240; At1g76880; F7O12.5; GSVIVT00000450001; GSVIVT00031772001; GSVIVT00034901001; GT2; GTL1; GTL2; LOC_Os03g02240; OJ1212_C06.7; OJA1212_C06.8; OSJNBa0090O10.6; Os02g0104500; Os02g0648300; Os03g0113500; OsI_08282; OsI_09710; OsI_09711; OsJ_07722; Os

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	MADF domain	IPR006578	-	-
Sma3	Protein of unknown function DUF810	IPR008528	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Myb-like domain	IPR017877	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002300534.1	predicted protein, partial [Populus trichocarpa]	0.0	49%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9C882

Fln msg: your sequence is longer than subject: 780 - 587

Fln protein: MQQPQLPSASGQYGVPEVPQFVGGRSSHGHMLGISHDMPHHEPPQSQHLQQQLLQQSHSQPPQQQQQQQSVNLQVKTDSLTEIQSSAATRPPPRTTDGFEQMVPNSAFGDDEVLAAGEDGDRGAVGSRWPRQETLALLKIRSEMDASFRDASLKGPLWEEISRKLADLGYQRSAKKCKEKFENVQKYYKRTKDGRAGRQDGKSYRFFSQLEALHNHNNNSNNNLHNSSSIGNNTNNARNNHSHALSSGAGAPVRPQPTAPTVLTNNDIAGAGASASAGELNRNSGAATNAIVLKQSADYTAGNLSFSSESSEDEEFDEQTDSRKRKRGSSTTEKMMLFFEQLIKQVMERQESMQQKFLETIEKREQDRMIREEAWKRQEMARLNREHEIMAQERALAASRDTAFIALFQKITGQNFQAPVMAPVAQSTTTINNTVPLPTYETHPARDVVTPHHQRDTTQDVNVDQTELTFDPNSSRWPKPEVHALIKLRTGLEPRYQDAGPKGPLWEEISAGMARLGYSRSSKRCKEKWENINKYYKKVKESNKKRPEDAKTCPYFHQLEQLYKKKIFGNAAKQEHPNQEDARIEQLPGGNNNNSDRNERQSTDGILVIVPPPGSSSDVKNSNSNPDNNGPPIPSSSGAVQTTFFTSPENGTGADQRALKKPEGLVMDVMDMDDMRSAPQHQQQSVVDDYDDDKMDTEEEEEDSDNNSEQEHHNIIPIPTISTTHDRQPTTVVDHLPFAEFVHESRTSTTAAATAASSFMAMVHRFATAEAPEFKTSKA*

Protein Length: 781

Fln nts: TACTCACTGCCTTGGCTTCACTTCACTCATAGGGGTGGACGAAAGGAAGCGAGGGTCGGGGTCAGGGTCCGGGTCGCTTTTCCAGTTGTCCTCTCTTTTTCAATCCCGACCTGGACTTGTACCCGCTGTGTCGATCATTTACATTCTCCCTCTTTTAATTTTTTCACAGAGAGGATTGAACTGAAAATAAAATGAAAATGAATGCTTTTTTTCCGCCCATGTGATAATGGTGGACTGGACGACTCTTCCTCCACGCTCAGCCCCTGGGAAAGTGTCAATGGCGTGGTGCGCGTGTAAGAGAAGGTACTGAACGAACGACATCGTCCAGCCCGCCACTCGCCGGATATCGAAATCACGACCTTTTTGTCAACTAACGGCTGTTGAAAGA_-_ATGCAGCAGCCGCAGCTGCCATCAGCGAGTGGACAGTATGGTGTGCCCGAGGTTCCTCAGTTCGTCGGAGGCCGTTCTTCTCACGGTCATATGCTCGGGATCTCCCACGACATGCCGCACCACGAACCACCGCAATCACAGCACTTGCAGCAACAGCTTTTGCAGCAGTCTCATTCTCAGCCCCCGCAGCAGCAGCAGCAGCAGCAGAGTGTTAATCTGCAGGTTAAAACGGATTCTTTAACCGAGATCCAGTCCTCGGCTGCCACCAGACCGCCTCCGCGGACTACCGATGGCTTTGAACAGATGGTGCCGAACAGCGCTTTCGGTGACGACGAGGTGCTCGCAGCGGGTGAAGATGGAGATAGAGGGGCGGTCGGCAGCCGCTGGCCCAGACAGGAAACCCTCGCTCTACTTAAAATCCGATCCGAGATGGACGCTTCGTTTAGGGACGCTAGCCTCAAAGGGCCTCTATGGGAAGAAATTTCACGGAAGCTCGCAGACCTAGGTTATCAGAGGAGTGCCAAGAAATGCAAAGAAAAGTTCGAAAACGTTCAGAAGTATTATAAACGAACTAAAGACGGAAGAGCTGGCCGGCAGGATGGTAAAAGCTATAGATTCTTCAGCCAGCTGGAAGCTCTCCATAATCATAACAACAACAGCAATAATAATCTTCACAACAGCAGCAGCATTGGCAATAACACTAATAATGCAAGAAACAATCATAGCCATGCACTGAGCAGCGGGGCCGGAGCACCAGTCAGGCCACAGCCTACCGCTCCTACTGTGCTCACCAACAATGATATTGCCGGTGCCGGTGCCAGTGCCAGTGCCGGGGAATTGAACAGAAATAGCGGCGCCGCTACTAATGCCATCGTATTGAAGCAAAGCGCAGATTATACTGCCGGTAATTTAAGTTTCTCGTCCGAATCGTCCGAGGACGAAGAATTTGATGAACAGACGGACAGTCGGAAAAGAAAGCGGGGCTCCAGCACCACAGAGAAAATGATGCTGTTTTTCGAGCAATTGATAAAGCAAGTAATGGAGAGGCAGGAGAGCATGCAGCAGAAGTTTCTGGAAACTATAGAGAAGCGCGAGCAAGACAGAATGATCCGCGAGGAGGCTTGGAAAAGGCAAGAAATGGCGCGATTGAACAGAGAACATGAGATTATGGCCCAGGAACGAGCCCTTGCGGCTTCCAGAGATACTGCATTCATTGCATTGTTTCAGAAAATTACAGGCCAGAATTTCCAGGCTCCTGTTATGGCTCCTGTGGCACAGTCGACAACGACTATCAATAATACTGTGCCATTGCCGACTTACGAAACGCATCCAGCCCGGGATGTTGTTACTCCTCATCATCAGCGGGATACTACTCAAGATGTCAATGTAGACCAAACGGAATTGACCTTTGATCCCAACAGCAGCAGGTGGCCCAAGCCTGAAGTTCATGCACTGATAAAGCTGAGAACCGGACTGGAGCCCAGATACCAAGATGCCGGGCCCAAAGGCCCGCTGTGGGAAGAAATCTCTGCTGGAATGGCCCGCCTCGGCTACAGCCGCAGCTCCAAGAGGTGCAAGGAGAAATGGGAAAATATCAACAAATACTACAAGAAAGTTAAAGAAAGCAACAAGAAACGGCCGGAAGATGCAAAGACGTGTCCTTATTTTCACCAGCTGGAACAATTATACAAGAAAAAGATCTTCGGCAATGCAGCCAAGCAAGAACACCCGAACCAGGAGGACGCCCGCATCGAGCAATTACCCGGCGGAAACAACAACAATAGCGACAGAAACGAGCGCCAAAGCACAGACGGCATCCTGGTCATTGTGCCGCCTCCAGGATCGTCATCGGACGTCAAGAACAGCAATTCAAACCCTGACAATAACGGTCCACCGATTCCTTCGAGCAGCGGAGCAGTGCAGACAACGTTCTTTACAAGCCCGGAGAATGGAACCGGCGCCGATCAGCGAGCTCTGAAGAAGCCAGAAGGCCTTGTGATGGACGTGATGGACATGGACGACATGCGGTCCGCGCCGCAGCACCAACAGCAATCCGTTGTAGACGATTACGATGATGATAAAATGGACACAGAAGAAGAAGAAGAAGACAGCGACAATAACAGCGAGCAAGAACATCATAATATTATTCCTATTCCTACTATATCCACTACTCACGACAGGCAGCCGACGACGGTGGTCGATCATCTACCGTTTGCCGAGTTTGTTCACGAGAGCCGAACGAGCACTACAGCCGCCGCCACAGCTGCCAGTTCCTTCATGGCCATGGTCCACCGCTTCGCTACAGCCGAAGCTCCCGAGTTCAAAACCTCTAAAGCATAA___ACCGCCGCCTAAGATTATAAATTATCATCACTAGCGGCAGCAGACTGAGCTTGTGTACCATATGTACCATTAGCAGAGGTTTAGGTTTAAGGTTGGGTTGGGATATTGGCCATGAAGGCATTTCATCTTTATTGTCATCAAGCAAATAACCCTAATAAATTTGCGCTGCCATTGTTGCAGGGACTGTTACAGGGAAGTAGTTTTTTTGGTTAGCATATTTATTTATTTATTTATTTGTGGAATAAAATCTGATGTGTGAAAGGTCGTTTCGGCTGCTGCAATCGACAAAATCGAGTTATAAATGATGCAGTGGGCATATGGCCCTCTGACTTCACCTCTCTGTGGACTGTACAGACAGAGAGCTGGTAGGCCTCTCATATTTTCCTTCTGTAATCTTATTGACTTCATTATGAACCCAGAAACAAAATCCAGCTGTGTTGCACCGTCGAGTTTTACCACTTGTTGTAAAGAATCTTTCCATTATTTTATTAACCGCGTCTTTCTGTCATAGAGCCTGACACTGGCCAAACTGGTTCATGTTCTTTAT

Fln Alignment:

Contig1628___DSLTEIQSSAATRPPPRTTDGFEQMVPNSAFGDDEVLAAGEDGDRG-----AVGSRWPRQETLALLKIRSEMDASFRDASLKGPLWEEISRKLADLGYQRSAKKCKEKFENVQKYYKRTKDGRAGRQDGKSYRFFSQLEALXXXXXXXXXXXXXXXXXXXXXXXXXXXHSHALSSGAGAPVRPQPTAPTVLTNNDIXXXXXXXXXXELNRNS-GAATNAIVLKQSADYTAGNLXXXXXXXXXXXXXXQ---TDSRKRKRGS-STTEKMMLFFEQLIKQVMERQESMQQKFLETIEKREQDRMIREEAWKRQEMARLNREHEIMAQERALAASRDTAFIALFQKITGQNFQAPVMA-----PVAQSTTTINNTV---PLPTYETHPARDVVT--------------PH-HQRDTTQDVNVDQ-----TELTFDPNSSRWPKPEVHALIKLRTGLEPRYQDAGPKGPLWEEISAGMARLGYSRSSKRCKEKWENIXXXXXXXXXXXXXRPEDAKTCPYFHQLEQLYKKKIFGNAAKQEHPNQEDARIEQLPGGNNNNSDRNERQSTDGILVIVPP
Q9C882______________NEVVEEASPISSRPP---ANNLEELMRFSAAADDGGLGGGGGGGGGGSASSSSGNRWPREETLALLRIRSDMDSTFRDATLKAPLWEHVSRKLLELGYKRSSKKCKEKFENVQKYYKRTKETRGGRHDGKAYKFFSQLEALNTTPPSSSLDVTPLSVANPILMPS--------SSSSPFPVFSQPQPQTQTQPPQTHNVSFTPTPPPLPLPSMGPIFTGVTFSSHSSSTASGMGSDDDDDDMDVDQANIAGSSSRKRKRGNRGGGGKMMELFEGLVRQVMQKQAAMQRSFLEALEKREQERLDREEAWKRQEMARLAREHEVMSQERAASASRDAAIISLIQKITGHTIQLPPSLSSQPPPPYQPPPAVTKRVAEPPLSTAQSQSQQPIMAIPQQQILPPPPPSHPHAHQPEQKQQQQPQQEMVMSSEQSSLPSSSRWPKAEILALINLRSGMEPRYQDNVPKGLLWEEISTSMKRMGYNRNAKRCKEKWENINKYYKKVKESNKKRPQDAKTCPYFHRLDLLYRNKVLGS------------------GGGSSTSGLPQDQKQSPVTAMKPP

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
1731	20		80		0.995493
1979	87	12			0.992554
1981	87			12	0.992554
2482	33	66			1.0
2553			40	60	1.0
2606		87		12	0.992554
2711		75		25	1.0
2717		87	12		0.992554
2720			12	87	0.992554
2721	87			12	0.992554
2722	87		12		0.992554
2726	87	12			0.992554
2728	87			12	0.992554
2729	87		12		0.992554
2730	87		12		0.992554
2732		87		12	0.992554
2734		87		12	0.992554
2736	18		81		0.999994
2932		33		66	0.997452
3032		33		66	1.0
3040			16	83	0.999991
3165			80	20	0.995493
3166		20		80	0.995493
3168		20		80	0.995493
3180	25		75		0.996473
3181			25	75	0.996473
3184	25			75	0.996473
3187		75		25	0.996473

SSRs (tot: 3)

Start position	End position	Sequence	Length
574	595	GCA GCA GCA GCA GCA GCA GCA G	22
2479	2496	AGA AGA AGA AGA AGA AGA	18
2944	2964	TATT TATT TATT TATT TATT T	21

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain