SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1621

Length: 3111 nt

UniGene Fasta

>sp_v3.0_unigene1621
ATTAATTACTGTTGCTATCTGTTGCAATCTAGTTTATATAATATGATTGAAAATGGGAATGGGGATTGATCTGATGGAATTCACACGAACGTTCTAGAGCAACTGGGCATATTGCCAGTGTAGGCATAACCACCTACTTTACCATCTGGACATCCTGCTTGCCTAAGTAGATAAAGACAGAAATTTGCAGAGAATATTGAGAAAAATGGGAATGGTAGAATAGATAATGTTACAAAGGAGATTGGAGGCCTGTGTGTCTGCTCATGTCATAGTGATCTTTTTGGAGTATTTGCAGGGCAATCCTAAATTGAAAAAGGTGTCTGATTGATTGGCATACTGTCATGGTGAAGTGAACAGTGTAGTGATAGAGTGGTGGTTTTGGATTTCTTGGAAATGATTCTGTGAGCGCTAATTGTTGGTTTTGATGAAAAGTGGGAAGCCTTTTCCGGAGAATATATCTGGGGAGTGAATTTTATTCTTGCTGTCTGGGTACTGGAGTCTCCCACCAAGGATTTGAAGCTCTGATGAATTTGGGAGTGAGGCTGATGATTTTGAAAAGACAAAGAAAATCCAGCCTGAATCTGGGTATTCGCAATGAGTTTTATCTTTGTTTGATTCATTGGCACTTGGGTCATGATTGAAACATTCAGTTTTGGTATCAGTCATCTGGTTGAGCATTTTAGATTTTGATTCAGAGGCCTCGTTTTGGTTCTTGTGTAGCCATGTTTTGGATCAAGAATCTATTTTGTTGAGAATGGTTTGGTTGATGGGCTAGTTTGAGTATCATTTGGTTATTGCTAAACAGCTTTTGCTATTGCAAGTTGCACTGCTAGTGAAGTTGTTCAACAACTTCGAACCAAAAAAAAAAAAAAAAATCAGGGGAAAAAGTAATTGAAGATTTTTGAAGTATTATTTTTGGGTGGTGCTTTACATAACAATGGCTAGATCAGCGCATACTGTGAAAGAGATAGTGGATGAGATTATGAGACTGCATAGATCTCTACCTCCTAGGCCTAGTCATGAGGAAGTTGAGGCTGCTCTTGCCCTGGTAAAGGATGTGCAAAATAGAGAACAGTCTCGCTTAGAAACGGTTCAACAACAACCCAAACCCCCTGATGTGCCAGACGAATTATTCTCTGTATTGCAGGAGATGCAGAAGAATCTCATTTTTTTACAGAGCAAGGAGGAAAAAGGCGAAGCATTAGCCCTTCTTGATTTGGAGCAGTGCCATTGTCTGTTCGATGATTTGCTACAAAAGGCCGCTGGGAGTCTTTCTCACATCGACCAAGGTAATTCAAGGCCTTCTGCGGTCTCAACCATTAACCCAAATGGAGTTCGAGAACTCGGCAATGGTCAAGACGATGATCTGAAACAAAAGGAACTTAAGAAAAATCAGCACATCGACCAAGGTAATCCAAAGCATACTAAAGACTCATAGTTTCATCCAAAAAACAAAAGAGTCACATTCGGAAATGAGAATTTTAGGATCAGAAAAAGACAAAGTTTCGCTGCCAATTTCCAAAGAAAAATATTCTTCTGAAACAGGGGACGATGGACAAAAACTCAGTCTAATAAAAATTGCCAGCCTTATTGAAGCAACTGCGAAGAAAGGTGCTGAGAGTTTGGATCTTCGAGGAAGATTAGTGGAACAGCTTGAGTGGCTCCCTGATTCAATTGGAAAGCTTAGCAGCCTTGTCCAACTCAATTTGTCTGAGAACCATATTGTGACACTTCCTAGTTCCATAGGAAACCTTTCCAGCTTAACACGTCTAGATTTGCACTCAAATCAATTGTACAGTCTTCCTGATTCCATTGGGGAGCTTTCAAGCCTGACTGATCTAGATTTACATGGCAACCGCTTGAGGACATTGCCTGCCTCAATTGGGGATCTTTCCAGTCTTACAAATCTTAACCTGAGCGCAAATCAGCTGTCCTCATTACCAGAGTCTATTGGGAAGCTGACCAACTTGAAAAGCCTAAATGTAGAGACAAATGAGATAGAGGAACTGCCATATACAATTGGCCAATGTACTGCCCTTATTGAATTGCGAGCTGATTTCAATCACCTCAAGGCATTGCCAGAAGCAGTTGGAAAGCTTGTGTCTTTAGAGGTCCTAACACTGCACTATAACAGAATAAAGAGCCTGCCAACTACTATGGCTTCTTTATCGAGTTTGAAAGAACTTGATGTGAGCTTCAATGAATTGGAGTCAATACCTGAAAGCTTGTGCTTTGCTACAAGTCTTGTCAAACTGAATGTTGGCAGAAACTTTGCTGACTTGCAGTCACTTCCCCGGTCCATAGGCAACCTTGAAATGCTTGAGGAGTTGGATATTAGTAGCAATCAGATAAAGTTCCTTCCAGATTCATTTGCTATGCTTAGAAAACTTCGAGTGTTTAAAGTAGAAGAGACCCCACTTGAAGTGCCTCCAAGGCATATAGCTGAAATGGGAGCTCAGGCGGTTGTGCAGTACATGAGCGAACAAATTGCTAAGAGGGAAGAAAAATCACAAGTTGCCAAGCCCAAGAGCAGGTGGTCAAAATTTCTATCATGTCTGCTAATCTTGACTGGGAAGCGAAGAAGCAGAGGCTATGTCAAAGCTTGAACAGGATTGCTACAAAATGAATTTCTGGGCATGAAATTGTACTTTGTTCTACATGTGACCTGTCAAGCAGCATCAAAATAAGAAGAGTAGCAGGAAGCCCATCATTTGACCTTGTACGTAGAGTAGCAGGAAGCCCATCATTTGACCTTGTACGTTCCACTTTCTTTATAAGCCTATTCGAGAAAAACCCAATCCAGAGATTTTGAGGGAGCTTCTGGGATTGTGCTCAAGGTTGTTTGAAGCGAATCATATGTTGTGATCCAAGATTGTTTCCATGTTCAATGGTTTGAGATTTTTTTTTGTCTACACCCAAACTGGATCAGGAAGTGTGGCAATCAAATGTACTATTAGTGTGTGTCTTTTAATCAGTCATAATAAATGAACACTACTTGGAGGCCACTTGATTGTTGAGGTCTTATATCACTTGTAAATTTGAAAATTGTAAATGCTTTGCCTTTGCTTATAAATTTGAAAACTGTAAATGCTTTGCCTTTGTAGTTGAAAT

Ace file of the UniGene sp_v3.0_unigene1621

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ras group-related LRR 5 protein [Arabidopsis thaliana] gb\|AAW57414.1\| plant intracellular Ras-group-related LRR protein 5 [Arabidopsis thaliana] dbj\|BAF00638.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEC06625.1\| ras group-related LRR 5 protein [Ar	-	-	0.0	56%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	53%
Sma3	Leucine-rich repeat-containing protein, putative	-	-	5.464e-09	-

Source	Gene names
Sma3	AT4g26050; AT4g35470; At2g17440; At4g26050; At4g29880; At4g35470; At4g35470/F15J1.40; F20B18.160; GSVIVT00015791001; GSVIVT00015986001; GSVIVT00019317001; GSVIVT00031308001; GSVIVT00035485001; LOC_Os10g42190; MICPUN_101709; MICPUN_107462; MICPUN_107620; M

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Glycoside hydrolase, family 10	IPR001000	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G35470.1	PIRL4 plant intracellular ras group-related LRR 4 chr4:16846531-16848448 FORWARD LENGTH=549	64%
RefSeq	Arabidopsis thaliana	NP_195272.1	plant intracellular ras group-related LRR 4 [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002310108.1	predicted protein, partial [Populus trichocarpa]	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7SWD3

Fln msg: Separated hits, possible frame ERROR between 1315 and 1407,

Fln protein: MARSAHTVKEIVDEIMRLHRSLPPRPSHEEVEAALALVKDVQNREQSRLETVQQQPKPPDVPDELFSVLQEMQKNLIFLQSKEEKGEALALLDLEQCHCLFDDLLQKAAGSLSHIDQGNSRPSAVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKVIQSILKTHSFIQKTKESHSEMRILGSEKDKVSLPISKEKYSSETGDDGQKLSLIKIASLIEATAKKGAESLDLRGRLVEQLEWLPDSIGKLSSLVQLNLSENHIVTLPSSIGNLSSLTRLDLHSNQLYSLPDSIGELSSLTDLDLHGNRLRTLPASIGDLSSLTNLNLSANQLSSLPESIGKLTNLKSLNVETNEIEELPYTIGQCTALIELRADFNHLKALPEAVGKLVSLEVLTLHYNRIKSLPTTMASLSSLKELDVSFNELESIPESLCFATSLVKLNVGRNFADLQSLPRSIGNLEMLEELDISSNQIKFLPDSFAMLRKLRVFKVEETPLEVPPRHIAEMGAQAVVQYMSEQIAKREEKSQVAKPKSRWSKFLSCLLILTGKRRSRGYVKA*

Protein Length: 558

Fln nts: ATTAATTACTGTTGCTATCTGTTGCAATCTAGTTTATATAATATGATTGAAAATGGGAATGGGGATTGATCTGATGGAATTCACACGAACGTTCTAGAGCAACTGGGCATATTGCCAGTGTAGGCATAACCACCTACTTTACCATCTGGACATCCTGCTTGCCTAAGTAGATAAAGACAGAAATTTGCAGAGAATATTGAGAAAAATGGGAATGGTAGAATAGATAATGTTACAAAGGAGATTGGAGGCCTGTGTGTCTGCTCATGTCATAGTGATCTTTTTGGAGTATTTGCAGGGCAATCCTAAATTGAAAAAGGTGTCTGATTGATTGGCATACTGTCATGGTGAAGTGAACAGTGTAGTGATAGAGTGGTGGTTTTGGATTTCTTGGAAATGATTCTGTGAGCGCTAATTGTTGGTTTTGATGAAAAGTGGGAAGCCTTTTCCGGAGAATATATCTGGGGAGTGAATTTTATTCTTGCTGTCTGGGTACTGGAGTCTCCCACCAAGGATTTGAAGCTCTGATGAATTTGGGAGTGAGGCTGATGATTTTGAAAAGACAAAGAAAATCCAGCCTGAATCTGGGTATTCGCAATGAGTTTTATCTTTGTTTGATTCATTGGCACTTGGGTCATGATTGAAACATTCAGTTTTGGTATCAGTCATCTGGTTGAGCATTTTAGATTTTGATTCAGAGGCCTCGTTTTGGTTCTTGTGTAGCCATGTTTTGGATCAAGAATCTATTTTGTTGAGAATGGTTTGGTTGATGGGCTAGTTTGAGTATCATTTGGTTATTGCTAAACAGCTTTTGCTATTGCAAGTTGCACTGCTAGTGAAGTTGTTCAACAACTTCGAACCAAAAAAAAAAAAAAAAATCAGGGGAAAAAGTAATTGAAGATTTTTGAAGTATTATTTTTGGGTGGTGCTTTACATAACA_-_ATGGCTAGATCAGCGCATACTGTGAAAGAGATAGTGGATGAGATTATGAGACTGCATAGATCTCTACCTCCTAGGCCTAGTCATGAGGAAGTTGAGGCTGCTCTTGCCCTGGTAAAGGATGTGCAAAATAGAGAACAGTCTCGCTTAGAAACGGTTCAACAACAACCCAAACCCCCTGATGTGCCAGACGAATTATTCTCTGTATTGCAGGAGATGCAGAAGAATCTCATTTTTTTACAGAGCAAGGAGGAAAAAGGCGAAGCATTAGCCCTTCTTGATTTGGAGCAGTGCCATTGTCTGTTCGATGATTTGCTACAAAAGGCCGCTGGGAGTCTTTCTCACATCGACCAAGGTAATTCAAGGCCTTCTGCGGTCTCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCAAGGTAATCCAAAGCATACTAAAGACTCATAGTTTCATCCAAAAAACAAAAGAGTCACATTCGGAAATGAGAATTTTAGGATCAGAAAAAGACAAAGTTTCGCTGCCAATTTCCAAAGAAAAATATTCTTCTGAAACAGGGGACGATGGACAAAAACTCAGTCTAATAAAAATTGCCAGCCTTATTGAAGCAACTGCGAAGAAAGGTGCTGAGAGTTTGGATCTTCGAGGAAGATTAGTGGAACAGCTTGAGTGGCTCCCTGATTCAATTGGAAAGCTTAGCAGCCTTGTCCAACTCAATTTGTCTGAGAACCATATTGTGACACTTCCTAGTTCCATAGGAAACCTTTCCAGCTTAACACGTCTAGATTTGCACTCAAATCAATTGTACAGTCTTCCTGATTCCATTGGGGAGCTTTCAAGCCTGACTGATCTAGATTTACATGGCAACCGCTTGAGGACATTGCCTGCCTCAATTGGGGATCTTTCCAGTCTTACAAATCTTAACCTGAGCGCAAATCAGCTGTCCTCATTACCAGAGTCTATTGGGAAGCTGACCAACTTGAAAAGCCTAAATGTAGAGACAAATGAGATAGAGGAACTGCCATATACAATTGGCCAATGTACTGCCCTTATTGAATTGCGAGCTGATTTCAATCACCTCAAGGCATTGCCAGAAGCAGTTGGAAAGCTTGTGTCTTTAGAGGTCCTAACACTGCACTATAACAGAATAAAGAGCCTGCCAACTACTATGGCTTCTTTATCGAGTTTGAAAGAACTTGATGTGAGCTTCAATGAATTGGAGTCAATACCTGAAAGCTTGTGCTTTGCTACAAGTCTTGTCAAACTGAATGTTGGCAGAAACTTTGCTGACTTGCAGTCACTTCCCCGGTCCATAGGCAACCTTGAAATGCTTGAGGAGTTGGATATTAGTAGCAATCAGATAAAGTTCCTTCCAGATTCATTTGCTATGCTTAGAAAACTTCGAGTGTTTAAAGTAGAAGAGACCCCACTTGAAGTGCCTCCAAGGCATATAGCTGAAATGGGAGCTCAGGCGGTTGTGCAGTACATGAGCGAACAAATTGCTAAGAGGGAAGAAAAATCACAAGTTGCCAAGCCCAAGAGCAGGTGGTCAAAATTTCTATCATGTCTGCTAATCTTGACTGGGAAGCGAAGAAGCAGAGGCTATGTCAAAGCTTGA___ACAGGATTGCTACAAAATGAATTTCTGGGCATGAAATTGTACTTTGTTCTACATGTGACCTGTCAAGCAGCATCAAAATAAGAAGAGTAGCAGGAAGCCCATCATTTGACCTTGTACGTAGAGTAGCAGGAAGCCCATCATTTGACCTTGTACGTTCCACTTTCTTTATAAGCCTATTCGAGAAAAACCCAATCCAGAGATTTTGAGGGAGCTTCTGGGATTGTGCTCAAGGTTGTTTGAAGCGAATCATATGTTGTGATCCAAGATTGTTTCCATGTTCAATGGTTTGAGATTTTTTTTTGTCTACACCCAAACTGGATCAGGAAGTGTGGCAATCAAATGTACTATTAGTGTGTGTCTTTTAATCAGTCATAATAAATGAACACTACTTGGAGGCCACTTGATTGTTGAGGTCTTATATCACTTGTAAATTTGAAAATTGTAAATGCTTTGCCTTTGCTTATAAATTTGAAAACTGTAAATGCTTTGCCTTTGTAGTTGAAAT

Fln Alignment:

Contig1621___MARSAHTVKEIVDEIMRLHRSLPPRPSHEEVEAALALVKDVQNREQSRLETXXXXXXXXXXXXELFSVLQEMQKNLIFLQSKEEKGEALALLDLEQCHCLFDDLLQKAAGSL------SHIDQGNSRPSAVSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKVIQSILKTHSFIQKTKESHSEMRILGSEKDKVSLPI---SKEKYSSETGDDGQKLSLIKIASLIEATAKKGAESLDLRGRLVEQLEWLPDSIGKLSSLVQLNLSENHIVTLPSSIGNLSSLTRLDLHSNQLYSLPDSIGELSSLTDLDLHGNRLRTLPASIGDXXXXXXXXXXXXXXXXXPESIGKLTNLKSLNVETNEIEELPYTIGQCTALIELRADFNHLKALPEAVGKLVSLEVLTLHYNRIKSLPTTMASLSSLKELDVSFNELESIPESLCFATSLVKLNVGRNFADLQSLPRSIGNLEMLEELDISSNQIKFLPDSFAMLRKLRVFKVEETPLEVPPRHIAEMGAQAVVQYMSEQIAKREEKSQVAKPKSRWSKFLSCLLILTGKRRSRG--YVKA
D7SWD3______________MESSAKSVDDVVGEIMRIHRSLPTRPGIDEVEAARTLIRNVEKEDQARLEAIGRQPRNPDVPEELFMVFQEMQKNLVSLQSKEEKREALKLLDLEGVHLMFDDLIERASRCLPSTSISHHSSSSSSSPSTLSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKVTDLFTRDDSYVKKTKSTFYVDGI-GASPANLSTPQILDSSLKSPSTSGQDSEKLSLIKLASLIEVSSKKGTRDLNLQNKLMDQIEWLPDSIGKLSSLMTLDLSENRIVALPATIGGLSSLTKLDLHSNRIAELPDCIGNLLSVVVLDLRGNQLTSLPATFCRLVRLEELDLSSNRLSSLPESIGSLVKLKKLSVETNDIEEIPHTIGQCSSLKELRADYNRLKALPEAVGRIQSLEILSVRYNNIKQLPTTMSSLSNLRELDVSFNELESIPESLCFATTLVKMNIGSNFADLQYLPRSIGNLEMLEELDISNNQIRVLPDSFKMLTRLRVLRLDQNPLEVPPRHVAEMGAQAVVQYMAELVAKREVKSLPVKQKKTWAQ--RCFFSRSNKRKRNGMDYVKA

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
104		80		20	0.995493
169	20		80		0.995493
233	83		16		0.994512
334			12	87	0.992554
337		87	12		0.992554
364	75			25	1.0
369	50	50			1.0
390		16		83	0.994512
391		83		16	0.994512
431			25	75	0.996473
451		25		75	0.996473
468	75		25		0.996473
469	50		50		1.0
2210	75	25			0.996473
2326	80		20		0.995493
2327	80		20		0.995493
2328			20	80	0.995493
2620	85		14		0.999981
2846	83			16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain