SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1603

Length: 2022 nt

UniGene Fasta

>sp_v3.0_unigene1603
GGGGCGAGGGCAAGGGACTCATCCAAATGGGAAGAGGAGCAGGAACAGCAGACTCCAAGTCCGCGTAAAAGTATGAATGCTTGAAGCTCGAGGCAACGGCAGAGGGAGGCAGAGGGGCAGGGGCGAGGGCAAGGGACTCATCCAAATGGGAAGAGGAGCAGCAGGGCTACATCGCTATAATTATTATCTCAGCAAACAATGATGCCCAAATATGTACCCCGGGGCCACCCTAGCGATTACATTGCAGTGGGGATTTCCATCCTCACTCTGACACTCCTCATATTCCTTTGTGGCACAGCCTTTGCATGGAATGTTCACAAAGTCCCAAAGTTAAAAACAAATCACTTTCAGCTTTTGGTTATACAGACTATTGGCAGCATCACTTTTTTGATATCGCTTATGATGTCAATTAACCTTTTGAAGTTTGGACATGGACATTTCTGGCAGTCATGTTATCTTTGGACAGTATGGCTAGAAGGCCCATGCGGTTTTGGTTTGCTGATGAGCTGCCGGATTGCACAAGCTTATCGACTTTATTATTTGTTTGTCAAGAGGCGTTTACCACTGATCAAGTCATATCAGCTGATTCTGTTAATACTTCTACCATGGCTTGGTGCAGCTGCCTTTTCTCAGGCAATGAGACCTTTCAACCATGTTTGTCATGTTGGAAAACAATGGGTTATACCAGTAGCTTCGCTGCAAATGTTGTACTTATTGGTGCTCATGGGTGGTTTACATGGAGAATTAGAAAAGTTGAATTTAAATTTGACGAATTCAAAGAGCTGAGCAAGGGAGTAACTATTACGCTTATATTCATAGGAGTTTGGGTTGCACTATACGTTGCTAATGAGGTTCATGATGAAAAATCAACAAGGCTTATGGTTGCATCGAGGTTCATGTTGATGCTTGCGGCCAATATTCTGGTTCTCTCCTTCTTTTTTATATCTATGTCACGACCTCTATTCACCCAACTGAGCATGAGGAAACGAGAATCTGATAAACTTGAGACAATGGGGCGCATATTAGGAGTTCCAGAAAGCGGATTGCTTTTTCCAACAGGCATGCCTTTGAATTTGGATGAACCTCTTGAAAAGCTGCTTTGTCAGAAAAAATTTCGACAATCTTTTATGGCTTTCGCAGATAGTCGAATGGCTGGGGAGAGTGTACACTTCTATGATGAAGTACATGAGTTGAATAAGATCCCGATTGGTGACACAGCACGTAGGATCTATATGGCAGGACATATAATTGAACAATATATAGCTGTTGATTCACCTATGGAGATTAACATATCACATCAGATGCGCCAAGAAATTTTGGACACAACTGATCTTGCTCATCCTGATCTCTTCACAAATGCAGTCAATGAGATGGTGCGAATGATGCAAATGAATCTGGAGAAGGACTACCAGAATTCCACTTTCTATTCACGATTCAAGGAAGAGATCAGAGATGCAGCTGAAGCATGTGAACTTTGGGACAATACAACTATTTGGGATTATTCTCCAAAAGTAAGTTTTGTCCATGGTATAGATGATCCCTTTGACCACGATAGCCTTTGCAGGAATTCTGAGGGATCATGGCAATCTTCCGTACAAAATAATAATGCCTGTCCATAAAACTCAAGTTCAATAAAGTCTTCAGTTCCATTTTTATTGCTAGATGAAGCTGATCTGCATCAATCATCGTTTAAGCAAATATAATGCAGAACCCTTTCAGTGGGAGCTAGGAAATTTCATTCATGGGATGGCTCCTTACCCTTGTCACTTCCATCTTGAAAATCCCATATGTTTAGTTTCTTTGATTTTGACATTTTGTCTATTCATCCAGGTTGGAATTACTATGACCTATTTCAAGAGATACATGATTGCACTTCAAGTTGGTTTTGTATCAGTTATCCAGAGCTGCAGTAGGCACGCTTGTAAATAAGAGATGTATTGCGGTGCCTATGTTTGATAATGTCTACCAGCAGTCTGAACTTTTCATCTAAGTTAATTTCGATCAAATTCGTACTGTTGTTTA

Ace file of the UniGene sp_v3.0_unigene1603

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	regulator of G-protein signaling 1 [Arabidopsis thaliana] gb\|AAN12971.1\| unknown protein [Arabidopsis thaliana] gb\|AEE77116.1\| regulator of G-protein signaling 1 [Arabidopsis thaliana]	-	-	0.0	46%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	53%

Source	Gene names
Sma3	At3g26090; GSVIVT00035126001; POPTRDRAFT_720911; RCOM_1082600;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	signal transducer activity	GO:0004871	Molecular Function	-
Sma3	G-protein coupled receptor activity	GO:0004930	Molecular Function	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	response to glucose stimulus	GO:0009749	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Regulator of G protein signalling	IPR000342	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G26090.1	" RGS1, ATRGS1 G-protein coupled receptors;GTPase activators chr3:9532883-9535410 FORWARD LENGTH=459"	46%
RefSeq	Arabidopsis thaliana	NP_189238.2	regulator of G-protein signaling 1 [Arabidopsis thaliana]	46%
RefSeq	Populus trichocarpa	XP_002311742.1	predicted protein, partial [Populus trichocarpa]	50%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7TAJ5

Fln msg: Separated hits, possible frame ERROR between 729 and 732,

Fln protein: MMPKYVPRGHPSDYIAVGISILTLTLLIFLCGTAFAWNVHKVPKLKTNHFQLLVIQTIGSITFLISLMMSINLLKFGHGHFWQSCYLWTVWLEGPCGFGLLMSCRIAQAYRLYYLFVKRRLPLIKSYQLILLILLPWLGAAAFSQAMRPFNHVCHVGKQWVIPVASLQMLYLLVLMxxFTWRIRKVEFKFDEFKELSKGVTITLIFIGVWVALYVANEVHDEKSTRLMVASRFMLMLAANILVLSFFFISMSRPLFTQLSMRKRESDKLETMGRILGVPESGLLFPTGMPLNLDEPLEKLLCQKKFRQSFMAFADSRMAGESVHFYDEVHELNKIPIGDTARRIYMAGHIIEQYIAVDSPMEINISHQMRQEILDTTDLAHPDLFTNAVNEMVRMMQMNLEKDYQNSTFYSRFKEEIRDAAEACELWDNTTIWDYSPKVSFVHGIDDPFDHDSLCRNSEGSWQSSVQNNNACP*

Protein Length: 475

Fln nts: GGGGCGAGGGCAAGGGACTCATCCAAATGGGAAGAGGAGCAGGAACAGCAGACTCCAAGTCCGCGTAAAAGTATGAATGCTTGAAGCTCGAGGCAACGGCAGAGGGAGGCAGAGGGGCAGGGGCGAGGGCAAGGGACTCATCCAAATGGGAAGAGGAGCAGCAGGGCTACATCGCTATAATTATTATCTCAGCAAACA_-_ATGATGCCCAAATATGTACCCCGGGGCCACCCTAGCGATTACATTGCAGTGGGGATTTCCATCCTCACTCTGACACTCCTCATATTCCTTTGTGGCACAGCCTTTGCATGGAATGTTCACAAAGTCCCAAAGTTAAAAACAAATCACTTTCAGCTTTTGGTTATACAGACTATTGGCAGCATCACTTTTTTGATATCGCTTATGATGTCAATTAACCTTTTGAAGTTTGGACATGGACATTTCTGGCAGTCATGTTATCTTTGGACAGTATGGCTAGAAGGCCCATGCGGTTTTGGTTTGCTGATGAGCTGCCGGATTGCACAAGCTTATCGACTTTATTATTTGTTTGTCAAGAGGCGTTTACCACTGATCAAGTCATATCAGCTGATTCTGTTAATACTTCTACCATGGCTTGGTGCAGCTGCCTTTTCTCAGGCAATGAGACCTTTCAACCATGTTTGTCATGTTGGAAAACAATGGGTTATACCAGTAGCTTCGCTGCAAATGTTGTACTTATTGGTGCTCATGGGxxxGTTTACATGGAGAATTAGAAAAGTTGAATTTAAATTTGACGAATTCAAAGAGCTGAGCAAGGGAGTAACTATTACGCTTATATTCATAGGAGTTTGGGTTGCACTATACGTTGCTAATGAGGTTCATGATGAAAAATCAACAAGGCTTATGGTTGCATCGAGGTTCATGTTGATGCTTGCGGCCAATATTCTGGTTCTCTCCTTCTTTTTTATATCTATGTCACGACCTCTATTCACCCAACTGAGCATGAGGAAACGAGAATCTGATAAACTTGAGACAATGGGGCGCATATTAGGAGTTCCAGAAAGCGGATTGCTTTTTCCAACAGGCATGCCTTTGAATTTGGATGAACCTCTTGAAAAGCTGCTTTGTCAGAAAAAATTTCGACAATCTTTTATGGCTTTCGCAGATAGTCGAATGGCTGGGGAGAGTGTACACTTCTATGATGAAGTACATGAGTTGAATAAGATCCCGATTGGTGACACAGCACGTAGGATCTATATGGCAGGACATATAATTGAACAATATATAGCTGTTGATTCACCTATGGAGATTAACATATCACATCAGATGCGCCAAGAAATTTTGGACACAACTGATCTTGCTCATCCTGATCTCTTCACAAATGCAGTCAATGAGATGGTGCGAATGATGCAAATGAATCTGGAGAAGGACTACCAGAATTCCACTTTCTATTCACGATTCAAGGAAGAGATCAGAGATGCAGCTGAAGCATGTGAACTTTGGGACAATACAACTATTTGGGATTATTCTCCAAAAGTAAGTTTTGTCCATGGTATAGATGATCCCTTTGACCACGATAGCCTTTGCAGGAATTCTGAGGGATCATGGCAATCTTCCGTACAAAATAATAATGCCTGTCCATAA___AACTCAAGTTCAATAAAGTCTTCAGTTCCATTTTTATTGCTAGATGAAGCTGATCTGCATCAATCATCGTTTAAGCAAATATAATGCAGAACCCTTTCAGTGGGAGCTAGGAAATTTCATTCATGGGATGGCTCCTTACCCTTGTCACTTCCATCTTGAAAATCCCATATGTTTAGTTTCTTTGATTTTGACATTTTGTCTATTCATCCAGGTTGGAATTACTATGACCTATTTCAAGAGATACATGATTGCACTTCAAGTTGGTTTTGTATCAGTTATCCAGAGCTGCAGTAGGCACGCTTGTAAATAAGAGATGTATTGCGGTGCCTATGTTTGATAATGTCTACCAGCAGTCTGAACTTTTCATCTAAGTTAATTTCGATCAAATTCGTACTGTTGTTTA

Fln Alignment:

Contig1603___GHPSDYIAVGISXXXXXXXXXXCGTAFAWNVHKVPKLKTNHFQLLVIQTIGSITFLISLMMSINLLKFGHGHFWQSCYLWTVWLEGPCGFGLLMSCRIAQAYRLYYLFVKRRLPLIKSYQXXXXXXXPWLGAAAFSQAMRPFNHVCHVGKQWVIPVASLQMLYLLVLMGxFTWRIRKVEFKFDEFKELSKGVTITLIFIGVWVALYVANEVHDEKSTRLMVASRFMLMLAANILVLSFFFISMSRPLFTQLSMRKRESDKLETMGRILGVPESGLLFPTGMPLNLD--EPLEKLLCQKKFRQSFMAFADSRMAGESVHFYDEVHELNKIPIGDTARRIYMAGHIIEQYIAVDSPMEINISHQMRQEILDTTDLAHPDLFTNAVNEMVRMMQMNLEKDYQNSTFYSRFKEEIRDAAEACELWDNTTIWDYSPKVSFVHGIDDPFDHDSLCRNS
D7TAJ5______________GCPSDYIAVAISLLCFILLLIKATLPFL--VHKVPRPKGSGFWIPVIQVFASLNLLLSIVMSINFLKFKKKHWWQSCYLWAVWVEGPLGFGLLLSCRIVQAFQLYYIFVKRRLPPIRSYVFLPTIVLPWIAGAALLHKKKPLNERCHLGTRWIIPVVLLHTTYVAALVGxFTVAIRHIEFRFHELKDLWRGILVSTSSVGLWVTAYILNEIHDDIEW-LQVTSRFLLLIMASILVLAFFSMSSSQPLLSKMSLRKREATEFETMGRALGIPDSGLLLQREPAPDIDPNEPLDKLLLNKGFRQSFMAFADSCLAGESVHFYDEVHELAKIPVDDPVRRIYMARHIIEKYVIAGATMEVNISHRNRQEILTTPDLAHPDLFNNALNELLQLMKMNLAKDYWSSMFFKKLRED-GTGSNGHEL-EVVTGWNYSPRLSCVHGEDDPFHEEHPSKSS

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
243			25	75	0.996473
1530		20		80	0.995493
1531	80		20		0.995493
1532		40		60	1.0
1533	80	20			0.995493
1542		80		20	0.995493
1544		20		80	0.995493
1721	87		12		0.992554
1727	87		12		0.992554
1878			12	87	0.992554
1909		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain