SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1601

Length: 1451 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene1601

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	histone deacetylase 2 [Arabidopsis thaliana] sp\|Q944K3.2\|HDA2_ARATH RecName: Full=Histone deacetylase 2 gb\|AED93517.1\| histone deacetylase 2 [Arabidopsis thaliana]	-	-	0.0	68%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	70%
Sma3	Class III RPD3 type histone deacetylase protein	-	-	9.277e-10	-

Source	Gene names
Sma3	At5g26040; CHLREDRAFT_119655; GSVIVT00032175001; HDA1502; HDA1503; HDA2; Os06g0571100; OsI_23434; OsJ_21754; P0610D01.8; PHYPADRAFT_125141; PHYPADRAFT_189033; RCOM_0797630; T1N24.9;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	chromatin modification	GO:0016568	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Histone deacetylase superfamily	IPR000286	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G26040.2	HDA2 histone deacetylase 2 chr5:9099321-9101598 REVERSE LENGTH=387	0.0	68%
RefSeq	Arabidopsis thaliana	NP_568480.2	histone deacetylase 2 [Arabidopsis thaliana]	0.0	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7STN3

Fln msg: your sequence is shorter than subject: 342 - 359

Fln protein: MASSTDLEAKGTERIFSSKLYMDVSPSKVPVIYSSSYNISFMGIEKLHPFDSSKWGRVCQFLISEGILDRNRLVEPSEATKDDLLVVHTESYLDSLKSSINIAFIIEVPPVALLPNFIVRKRVLQPFCKQVGGTVLAGKLAKERGWAINVGGGFHHCSKNKGGGFCVYADISLCIQFAFARLGISKVMIIDLDAHQGNGHEMDFAHDGRVYILDMYNTEIYPQDYEARRYIHQRVELLSGASTKEYLERLDKELEVAQNAFEPDLILYNAGTDILNGDPLGMLKVDPDGVIKRDEKVFAFAQQKKVPIVMLTSGGYMKSSARVIANSIINLSSKHLIELNK*

Protein Length: 343

Fln nts: GTACACACATGCGATGTCCAACGGCTGGGCAAACATAGAATTAAGGCGGTGTCAGATAAGCTAGAAGAGAGAGGAGAAGTACACACATTTCTTAGCATTTCACCTTCCTGCGCTCTCGCAAGTAATTTTCTGCATCAGAACACCGTATTTGGAGGAAGATTTGGCTCGTTAGGAAAATACGCTATCACCGTATTTGGAGGCAGATTTGGCTCGTTAGGAAAATACGCTATCAGGAAACATGTACGCAAGGGTTCGAATCTTGACAGCCAAAGACTGATATCAGCATTCTGGAAGTTGTTGGCTGCTTCCGCAATTAAGAATAATTATTCTGTGCCTTCAATATCTGCG_-_ATGGCGTCGTCTACTGACCTGGAAGCCAAGGGCACGGAGCGGATTTTTTCCAGTAAACTTTACATGGATGTTTCTCCCTCAAAGGTGCCTGTAATCTATTCCTCCTCCTACAACATATCTTTTATGGGAATCGAAAAACTGCATCCCTTTGATTCTTCAAAGTGGGGTCGAGTCTGTCAATTTCTCATTTCAGAAGGCATCCTAGACCGTAACAGACTTGTGGAACCTAGCGAGGCTACTAAAGATGACTTGCTTGTGGTACATACAGAATCTTATTTGGACAGCCTGAAAAGCAGTATAAATATTGCTTTTATTATCGAGGTGCCTCCTGTAGCATTGCTACCTAATTTTATTGTGCGGAAAAGGGTTCTCCAACCTTTTTGTAAGCAGGTGGGAGGGACTGTTCTAGCTGGAAAGCTTGCCAAGGAGAGAGGCTGGGCAATCAACGTAGGAGGAGGTTTTCACCACTGCAGTAAGAACAAAGGGGGTGGTTTTTGTGTGTATGCAGACATTTCTCTTTGTATACAGTTTGCCTTTGCTCGGTTGGGGATCTCCAAAGTGATGATAATTGATCTTGATGCCCATCAGGGAAATGGGCACGAAATGGACTTTGCCCATGATGGGAGGGTCTACATATTGGATATGTATAATACTGAGATATATCCTCAGGATTATGAAGCAAGGAGATACATTCATCAAAGAGTGGAATTATTGAGTGGTGCTTCAACTAAGGAGTACTTGGAACGCCTGGATAAAGAACTTGAGGTTGCTCAGAATGCATTTGAACCAGATTTGATTTTATACAATGCAGGGACTGATATTCTTAATGGTGATCCATTAGGTATGCTAAAGGTTGACCCGGATGGAGTAATTAAGCGTGATGAGAAGGTTTTTGCATTTGCTCAGCAAAAGAAAGTTCCTATTGTTATGCTGACTTCAGGTGGATACATGAAAAGTAGTGCTCGGGTTATTGCGAATTCAATCATAAATCTTTCTAGCAAACATTTGATTGAGTTAAACAAATAG___AGAGCATGCTTGTTCTCAAGCTGTTTTCTCTCCTGAACAGAGTCATTGTATAGCTAACACCTGAGAACAGTTTATAT

Fln Alignment:

Contig1601___SISAMASSTDLEAKGTERIFSSKLYMDVSPSKVPVIYSSSYNISFMGIEKLHPFDSSKWGRVCQFLISEGILDRNRLVEPSEATKDDLLVVHTESYLDSLKSSINIAFIIEVPPVALLPNFIVRKRVLQPFCKQVGGTVLAGKLAKERGWAINVGGGFHHCSKNKGGGFCVYADISLCIQFAFARLGISKVMIIDLDAHQGNGHEMDFAHDGRVYILDMYNTEIYPQDYEARRYIHQRVELLSGASTKEYLERLDKELEVAQNAFEPDLILYNAGTDILNGDPLGMLKVDPDGVIKRDEKVFAFAQQKKVPIVMLTSGGYMKSSARVIANSIINLSSKHLIE
D7STN3______________SVSSSTSASDAETLRRGRILSSKLYFDVPLTKVPIIYSSSYDIAFLGMEKLHPFDSSKWGRICRFLILDGALEKNHIVEPLEASKDDLLVVHSESYLNSLKTSLNVAVIIEVPPVALLPNCLVQQKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSAGKGGGFCAYADISLCIHYAFIRLNISRVMIIDLDAHQGNGHELDFSNDRRVYILDMYNPGIYPSDFEARRYIDQKVEVVSGTTTNEYLTKLDEALKVAGRMFDPELVVYNAGTDILDGDPLGRLKISPEGVTSRDEKVFRFAREKKIPLIMLTSGGYMKSSAKVIADSIVNLSRKCLID

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1031	33		66		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain