SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1529

Length: 1480 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene1529

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Auxin-regulated protein n=1 Tax=Cucumis melo subsp. melo RepID=E5GCH6_CUCME	-	-	0.0	54%
FL-Next	tr=Auxin-induced GH3 protein; Pinus pinaster (Maritime pine).	-	-	0.0	40%
Sma3	GH3 family protein	-	-	3.776e-17	-

Source	ECs	Term	Type	e value	Identity
Sma3	Ligases, Forming carbon-nitrogen bonds, Acid--D-amino-acid ligases (peptide synthases).	EC:6.3.2.-	-	7.272e-11	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Tryptophan metabolism	00380		7.272e-11	%
Sma3	Biosynthesis of siderophore group nonribosomal peptides	01053		7.272e-11	%

Source	Gene names
Sma3	AT2G46370; AT4g03400; At1g23160; At1g48670; At1g59500; At1g59500 orthologue; At2g46370; At2g47750; At4g03400; At4g37390; At5g13320; CF4; F11I4_14; F17A22.14; F4C21.36; F6G17.40; F9H3.1; FIN219; GH3; GH3-1; GH3-10; GH3-11; GH3-12; GH3-13; GH3-2; GH3-3; GH3

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	indole-3-acetic acid amido synthetase activity	GO:0010279	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-
Sma3	response to light stimulus	GO:0009416	Biological Process	-
Sma3	red, far-red light phototransduction	GO:0009585	Biological Process	-
Sma3	systemic acquired resistance	GO:0009627	Biological Process	-
Sma3	photomorphogenesis	GO:0009640	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	defense response to bacterium, incompatible interaction	GO:0009816	Biological Process	-
Sma3	jasmonic acid and ethylene-dependent systemic resistance	GO:0009861	Biological Process	-
Sma3	salicylic acid mediated signaling pathway	GO:0009863	Biological Process	-
Sma3	induced systemic resistance, jasmonic acid mediated signaling pathway	GO:0009864	Biological Process	-
Sma3	regulation of stomatal movement	GO:0010119	Biological Process	-
Sma3	auxin homeostasis	GO:0010252	Biological Process	-
Sma3	detection of fungus	GO:0016046	Biological Process	-
Sma3	protein adenylylation	GO:0018117	Biological Process	-
Sma3	negative regulation of defense response	GO:0031348	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	GH3 auxin-responsive promoter	IPR004993	-	0.0	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G46370.4	JAR1 Auxin-responsive GH3 family protein chr2:19034233-19036369 FORWARD LENGTH=586	50%
RefSeq	Arabidopsis thaliana	NP_001078069.1	putative auxin-responsive protein [Arabidopsis thaliana]	50%
RefSeq	Populus trichocarpa	XP_002320183.1	GH3 family protein [Populus trichocarpa]	50%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q4LAM0

Fln msg: your sequence is shorter than subject: 427 - 615

Fln protein: QFRTKGGLEASNASGLGLRSKGFKTYKESNQWLACSPEEVVFGFNYEQSLYCHLLCGLLYSHEVVRLASSFAYSIVEAFRTLENVWQQLCNDIKEGTLNEKITVPSMRESVSKILKPNPELAQTIYEICEKLLANNWYGVIHQLWPNIKYIGCIITGSMEPYVRKLRHYAGSLPILPGGYAASEGYFGVNIDPAKTTFTVVPSTAFFEFIPQDKESQAAPVGLNEVEIGKEYELIITTFGGLYRYRLDDVVKVNGFYNSSPRLSYAYPKNSILSCINIDKTTERDVQLIVNKAAELLNKETDLEVVDFTSYADLSSEPGHYVIFWELSRDIGDAHDEVFQKCCCILDEALVDELYFCNRKENRIGALELRIVAKGTFRKIVDHSMNLGAAASQFKTPRCISSSNQSLLNILNNGILATYKSTALFM*

Protein Length: 428

Fln nts: GCAATTCCGTACCAAAGGGGGGTTGGAGGCTAGCAATGCAAGTGGACTTGGATTAAGGAGTAAGGGATTTAAGACGTACAAGGAAAGTAACCAGTGGCTTGCTTGCAGTCCAGAGGAGGTTGTGTTTGGATTTAATTATGAGCAATCGCTCTACTGCCATCTCTTATGTGGGCTTCTGTACTCCCACGAAGTGGTACGCCTGGCGTCATCTTTTGCTTACAGTATTGTGGAAGCTTTTCGGACGCTTGAAAATGTGTGGCAACAGCTTTGCAATGATATCAAGGAAGGAACCCTAAATGAAAAGATCACTGTACCCTCCATGAGGGAGTCTGTCTCAAAAATTTTGAAGCCCAATCCAGAATTAGCACAGACAATCTATGAAATATGTGAGAAGTTATTGGCCAATAACTGGTATGGAGTTATCCACCAACTTTGGCCCAATATCAAGTACATCGGTTGTATAATTACAGGCTCAATGGAGCCTTATGTCAGAAAACTGAGGCACTATGCCGGGAGCTTGCCAATACTTCCTGGTGGCTATGCGGCTTCTGAAGGGTACTTCGGTGTAAATATTGATCCAGCTAAGACCACCTTCACGGTCGTGCCTAGCACTGCATTTTTTGAATTCATCCCTCAAGATAAGGAAAGCCAGGCGGCACCAGTTGGCCTCAATGAGGTTGAAATTGGCAAAGAGTACGAACTGATTATTACAACATTTGGAGGTCTCTATAGGTACAGGCTGGATGATGTGGTTAAAGTGAACGGTTTTTACAATTCCTCTCCCCGGCTTTCATATGCTTATCCCAAGAACTCAATTCTCTCCTGCATAAACATTGACAAGACGACTGAAAGAGACGTGCAACTAATCGTGAACAAGGCCGCCGAGTTACTGAACAAGGAAACAGACTTGGAGGTGGTGGACTTTACAAGCTATGCAGACCTCTCAAGTGAGCCTGGTCACTATGTAATATTCTGGGAGCTCAGCAGAGACATTGGTGATGCACATGACGAAGTTTTTCAGAAATGCTGTTGCATACTGGACGAGGCTTTGGTCGACGAGTTGTACTTTTGTAACAGAAAGGAGAACAGAATTGGAGCGCTTGAACTTCGCATTGTAGCCAAAGGAACCTTCAGGAAAATTGTGGATCACTCGATGAACTTGGGAGCAGCCGCGAGTCAGTTCAAAACACCCCGCTGCATTAGTTCATCGAACCAGTCGCTACTCAACATTCTTAATAATGGGATTCTTGCTACTTACAAAAGCACTGCGCTGTTTATGTGA___TGTCTCGTCCCTCTGAGCTCACTGGTAATTTTATGATAATAATGTGAGAGAATACTCGAATAAACAAAGCCACATCACAACGCAGTACACTTATTTCAGTGGGTTACATGTGCCCAAACACTCTACAGATGGTTTTTGTATCCGTTTATTTTTAACTTAATTGATAAGATATTTTCCAAGGAATAATTTTCTTGTACC

Fln Alignment:

Contig1529___RTKGGLEASNASGLGLRSKGF--KTYKESNQWLACSPEEVVFGFNYEQSLYCHLLCGLLYSHEVVRLASSFAYSIVEAFRTLENVWQQLCNDIKEGTLN-EKITVPSMRESVSKILKPNPELAQTIYEICEKLLANNWYGVIHQLWPNIKYIGCIITGSMEPYVRKLRHYAGSLPILPGGYAASEGYFGVNIDPA----KTTFTVVPSTAFFEFIP--QDKESQAAPV-----------GLNEVEIGKEYELIITTFGGLYRYRLDDVVKVNGFYNSSPRLSYAYPKNSILSCINIDKTTERDVQLIVNKAAELLNKETDLEVVDFTSYADLSSEPGHYVIFWELSRDIGDAHDEVFQKCCCILDEALVDELYFCNRKENRIGALELRIVAKGTFRKIVDHSMNLGAAASQFKTPRC
Q4LAM0______________RTPGGLLARPVLTSYYKSQDFIERPYDPYNVYT--SPMEAILCSDSYQSMYCQLLCGLAQNHEVLRVGAVFASGLLRAIRFLEEHWQSLCQDIRSGTVNDEEVTDPCLRESVMKILHPNTQLADLIRTECSK---ESWQGIITRLWPNARYLDVIVTGAMAQYIKTLDFYSGGLPQVCTMYASSECYFGINLKPLCQPWEVSYTLMPNMAFFEFLPVYRNKNEDAGPVTTATEQPAELVDLVDVKVGQEYELVITTYSGLYRYRVGDVLRVTGFHNAAPQFQFVCRKNVMLS-IDADKTDEAELHNAVMNAVKHL-EPLEATLVEYTSYTDTSTIPGHYVLYWELRTSALPVPPSVFEDCCLTVEESLNSVYRQCRVADKSIGPLEIKVVEMGTFDKLMDYAISRGSSINQYKAARC

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
446	80		20		0.995493
596	60		40		1.0
641	75		25		0.996473
647	75		25		0.996473
654		75	25		0.996473
655		50	50		1.0
672	75	25			0.996473
1060	14		85		0.993533
1153		25	75		0.996473
1213		40	60		1.0
1288			20	80	0.995493
1300	20		80		0.995493
1312	60			40	1.0
1313	60	40			1.0
1362		85		14	0.993533
1447	16			83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain