SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1506

Length: 3078 nt

UniGene Fasta

>sp_v3.0_unigene1506
CTCCAAACGTCAGACTCTGAAGCTCTGGGTTTGTCCAACCAACAAAGCTGACGGCCTGGAGATCCTGCAGAAATGGATCTCCTCCTCCCATCAGGAATTTTAGAATCTTAAATATATTGACCCAAAGAAGGTACTAGCAGCTTTGCAGCATGGAAGTCAAACAGATGGTAAATTCAGATTACTGATAGAAAGGTGACATGATTATGTAGATGCAATTAGAGGGCAATTGTAGAGCGAATCCATAAGTGAGGGGATACGATCTATATGATCGGATCTGGAGGACAAATCCAAGTGGGTTTCAGGAGGGGATCTGTACTGTGTCAGAATGGAATTCATTGGCTTGGCTGATGGGCAGTTTTGAATCCATTGCTGATACAAAATCCTGCTTTTGTACAGTGTTCTGCAGGTGGGTCTGTTGATTGAATAGCTGGAAAGTTCTAGGAAAGGGCAAGTAGGTGGTGTTCTGTGTGTAGAGCAATATGGATCAACCAGGAGACGAGAAGAAAAAGGCAGAAACCCTCTCTAGGAACAATTCGGTTGTGAATTCTGAATGCCCATCTGAAGATCATGCCAGTTTGGATGAGAATTCTGAGAGCCCAGATCAGAGTCTTGTTGTCGTGGATGAGAATTTGGATAGTGCAGAGAAACTGATCCTCAAATGGGACATGGCCTCTTCTGAGGCTGCAAAGCAGTCCATGATCTTTGAAGGACAGCCACAAGAGGCTGAAAAATATCTGAAAACTGTTGATGAGCTGCAGAAATTGATGGAGTCTGTGTCACTGCCCCAGGCCGATGTTCATAAGGCACAGAATGTATTGCAGATTGCAATGGTTCGTTTGGAGGAAGAGTTTAGAAATCTTTTGCTCGTTCACAGTGAACCTCTGGATCCCGAGCTGGTTCTCAATCCGGCCTCAATGGCCTCTTTCAGGTCTCTCAATGAATCATATAGGGATCGCCCATCACATAGTTCTGATGATGATGAAGCTGAGGAGGAAGAGGAAGAGGCTGTGTCTCATCCCCTGGCCGATAAGGTTTGTGAGATGGACTTGATTCCTCAGGATGTGATCCCTGATCTGCATAGGATTGCAGAAAGGATGGTGGCGGCAGGGATATACAAGAGAGTGTATGCAGGTCTATGGAAGTATCAGAAAATCCATGGTGGACGAGAGTTTCCTTCGACTAGGAATTGAGAAGCTCAGTATTGGAGACGTGCAGAGATTGGAGTGGGAAACACTAGAAGTCAAGATTAAGAAATGGATCAGGGCTGCCAAAGTGTGTATCAGGATGCTTTTTGCAAGCGAAAAGCGTCTGTGTGAGCAGGTCTTTAATGGGTTGGATTCTGTTGGGGAAACTTGCTTTTCTGAGCTTGCCAAGGGTGCAACAATGCAGTTGTTCAATTTCAGTGAAGCCATAGCCATTAGTAGGAGGTCTCCTGAGAAGTTGTTCAAGATCCTTGATCTGTATGAAACTCTTTCGGAGCTTTTGCCTGATATTGAGATGGTGTTTTCCGATGAGCTGTGCGCAAATGTGAAGACACAGGCCTCGGAAATATTGACGCGGCTTGGAGAAGCGGCCAGAGGGATCTTCACAGAGTTTGAGAATGCAATTCAAAGGGAGACTTCCAGAACACCTATCCCTGGAGGTACAATTCATCCTATAACTAGGTATGTAATGAATTACATTAGTTTTATTTCGGATTACAAAGAGACATTAATGAAGCTCGTTGTCAACAAGCCTTCTCAGACCTCAAAGCTTCTGCCTGAAGGGTTAATAGATTTGATTGGGGAGTATGATAAAGGAAGTGATTCAGATGATCAATCTGTGTTGTCTCTGCATTTGGTTTGGATCACTCTTATTCTGCAAAACAATTTAGAGGGTAAGTCCAAGGTGTACAAGGATATTTCTTTATCACATATTTTTCTTATGAACAATGTGCACTATATTGTTCAGAAGGTGAAGGGCTCAGATCTTAGAGCTCTAATTGGAGATGACTGGCTGAGAAAGCACTCAGGTAAGGTCAGACAATATGCAACAAACTACCAAAGAGCTACTTGGATGAAAGTACTGTCTTGTTTAAGAGATGAAGGTCTTCATGTGGGTGGAAGTTTTTCTAGTGGGGTCTCTAAAACTGCCCTGAAGGAGAGGTTCAAAAGCTTCAATGCTGCATTCGAGGAAGTGCATAGGTCTCAGTCTACTTGGATTGTTCCTGATGCACAGCTGCGAGAGGAACTCCGAATATCCATAGCAGAGAAGTTGTTACCAGCATATAGGTCTTTCTTTGGCCGATTTAAGAACCATTTGGAAAGTGGGAGGCACTCTGAAATGTATATCAAATACTCACCAGAAGACTTGGAAAATACCCTTTTAGATTTCTTCGAGGGCTCTCCTGTGTCTATGCATGTAAGGAGGAGATCCAATTGACAGCTTCTAGAACCTACTTCCTTCTGAGATTATTAGCCTCTAATATCTATCCTTCTCTGTAAACCAACAGATATAGCTTTCTAGGGTTTCTTTTCATCTCCCCCTGTAATGGCAGTAGAAGATTGGACCAAGCTAAGATGCCTATTGAGCTTATACCCAAAGCACTTCATTCTTTTGCACTGTTGAAGGTCCTTGTGCCTTGTAAGCTTTTGAGGGTACCGAAGTAGCTTACTTACTGGTTGAATTCTGTCTGACTCATCTCCAGATTCTTGCCCTGTTAAAATGGGTTCAATTTGGTTGATTGAAGCAGCATTCTTCAAAGCGAAGGGAAGAGACCGCGAGGGGCATCCAGTGATCAGCATCGTTCTTCATTTTTGTAGCTTGTCATTCAACTTATTATTTGTATTCTGTACAAGGTCTAATAATCAGCATTAGGAAAATGCATTTCCTAGGATGCATTTGCCCCACACAGTACTTGTGCGGGGCAAATTTTTCGTTATGTAATGTTTGCTATATTTCAAGAATTTGATATCAAACTTTTCCTAAAGGAAGAACTGGCATGCTTCTGCAACTTGATGGCCTCTTAATGCTGTTGAAGCAGGGGAAACATTTGCTAGTAATATGGTTTCCCAATTGAAATTCAGAACACTTTCAGGC

Ace file of the UniGene sp_v3.0_unigene1506

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Exocyst complex component 7 n=3 Tax=Arabidopsis RepID=Q9LJH9_ARATH	-	-	0.0	61%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	36%
Sma3	Protein binding protein, putative	-	-	1.857e-19	-

Source	Gene names
Sma3	AT5G58430; At1g07000; At1g54090; At1g72470; At2g39380; At3g14090; At3g29400; At5g03540; At5g13150; At5g13990; At5g50380; At5g58430; B1144B06.20; B1793G04.19; F10K1.28; F12E4_320; F15I1.17; GSVIVT00006977001; GSVIVT00013809001; GSVIVT00016199001; GSVIVT000

Source	GOs	Term	Type	Identity
Sma3	exocyst	GO:0000145	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	exocytosis	GO:0006887	Biological Process	-
Sma3	lateral root morphogenesis	GO:0010102	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Exo70 exocyst complex subunit	IPR004140	-	-
Sma3	Glycoside hydrolase, family 11, active site	IPR018208	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G72470.1	ATEXO70D1, EXO70D1 exocyst subunit exo70 family protein D1 chr1:27283759-27285660 FORWARD LENGTH=633	64%
RefSeq	Arabidopsis thaliana	NP_177391.1	exocyst subunit exo70-D1 [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002331201.1	predicted protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9N7F2

Fln msg: Overlapping hits, possible frame ERROR between 1142 and 1108, your sequence is longer than subject: 648 - 610

Fln protein: MDQPGDEKKKAETLSRNNSVVNSECPSEDHASLDENSESPDQSLVVVDENLDSAEKLILKWDMASSEAAKQSMIFEGQPQEAEKYLKTVDELQKLMESVSLPQADVHKAQNVLQIAMVRLEEEFRNLLLVHSEPLDPELVLNPASMASFRSLNESYRDRPSHSSDDDEAEEEEEEAVSHPLADKVCEMDLIPQDVIPDLHRIAERMVAAxxxxxxxxxxxxxIRKSMVDESFLRLGIEKLSIGDVQRLEWETLEVKIKKWIRAAKVCIRMLFASEKRLCEQVFNGLDSVGETCFSELAKGATMQLFNFSEAIAISRRSPEKLFKILDLYETLSELLPDIEMVFSDELCANVKTQASEILTRLGEAARGIFTEFENAIQRETSRTPIPGGTIHPITRYVMNYISFISDYKETLMKLVVNKPSQTSKLLPEGLIDLIGEYDKGSDSDDQSVLSLHLVWITLILQNNLEGKSKVYKDISLSHIFLMNNVHYIVQKVKGSDLRALIGDDWLRKHSGKVRQYATNYQRATWMKVLSCLRDEGLHVGGSFSSGVSKTALKERFKSFNAAFEEVHRSQSTWIVPDAQLREELRISIAEKLLPAYRSFFGRFKNHLESGRHSEMYIKYSPEDLENTLLDFFEGSPVSMHVRRRSN*

Protein Length: 649

Fln nts: CTCCAAACGTCAGACTCTGAAGCTCTGGGTTTGTCCAACCAACAAAGCTGACGGCCTGGAGATCCTGCAGAAATGGATCTCCTCCTCCCATCAGGAATTTTAGAATCTTAAATATATTGACCCAAAGAAGGTACTAGCAGCTTTGCAGCATGGAAGTCAAACAGATGGTAAATTCAGATTACTGATAGAAAGGTGACATGATTATGTAGATGCAATTAGAGGGCAATTGTAGAGCGAATCCATAAGTGAGGGGATACGATCTATATGATCGGATCTGGAGGACAAATCCAAGTGGGTTTCAGGAGGGGATCTGTACTGTGTCAGAATGGAATTCATTGGCTTGGCTGATGGGCAGTTTTGAATCCATTGCTGATACAAAATCCTGCTTTTGTACAGTGTTCTGCAGGTGGGTCTGTTGATTGAATAGCTGGAAAGTTCTAGGAAAGGGCAAGTAGGTGGTGTTCTGTGTGTAGAGCAAT_-_ATGGATCAACCAGGAGACGAGAAGAAAAAGGCAGAAACCCTCTCTAGGAACAATTCGGTTGTGAATTCTGAATGCCCATCTGAAGATCATGCCAGTTTGGATGAGAATTCTGAGAGCCCAGATCAGAGTCTTGTTGTCGTGGATGAGAATTTGGATAGTGCAGAGAAACTGATCCTCAAATGGGACATGGCCTCTTCTGAGGCTGCAAAGCAGTCCATGATCTTTGAAGGACAGCCACAAGAGGCTGAAAAATATCTGAAAACTGTTGATGAGCTGCAGAAATTGATGGAGTCTGTGTCACTGCCCCAGGCCGATGTTCATAAGGCACAGAATGTATTGCAGATTGCAATGGTTCGTTTGGAGGAAGAGTTTAGAAATCTTTTGCTCGTTCACAGTGAACCTCTGGATCCCGAGCTGGTTCTCAATCCGGCCTCAATGGCCTCTTTCAGGTCTCTCAATGAATCATATAGGGATCGCCCATCACATAGTTCTGATGATGATGAAGCTGAGGAGGAAGAGGAAGAGGCTGTGTCTCATCCCCTGGCCGATAAGGTTTGTGAGATGGACTTGATTCCTCAGGATGTGATCCCTGATCTGCATAGGATTGCAGAAAGGATGGTGGCGGCAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxATCAGAAAATCCATGGTGGACGAGAGTTTCCTTCGACTAGGAATTGAGAAGCTCAGTATTGGAGACGTGCAGAGATTGGAGTGGGAAACACTAGAAGTCAAGATTAAGAAATGGATCAGGGCTGCCAAAGTGTGTATCAGGATGCTTTTTGCAAGCGAAAAGCGTCTGTGTGAGCAGGTCTTTAATGGGTTGGATTCTGTTGGGGAAACTTGCTTTTCTGAGCTTGCCAAGGGTGCAACAATGCAGTTGTTCAATTTCAGTGAAGCCATAGCCATTAGTAGGAGGTCTCCTGAGAAGTTGTTCAAGATCCTTGATCTGTATGAAACTCTTTCGGAGCTTTTGCCTGATATTGAGATGGTGTTTTCCGATGAGCTGTGCGCAAATGTGAAGACACAGGCCTCGGAAATATTGACGCGGCTTGGAGAAGCGGCCAGAGGGATCTTCACAGAGTTTGAGAATGCAATTCAAAGGGAGACTTCCAGAACACCTATCCCTGGAGGTACAATTCATCCTATAACTAGGTATGTAATGAATTACATTAGTTTTATTTCGGATTACAAAGAGACATTAATGAAGCTCGTTGTCAACAAGCCTTCTCAGACCTCAAAGCTTCTGCCTGAAGGGTTAATAGATTTGATTGGGGAGTATGATAAAGGAAGTGATTCAGATGATCAATCTGTGTTGTCTCTGCATTTGGTTTGGATCACTCTTATTCTGCAAAACAATTTAGAGGGTAAGTCCAAGGTGTACAAGGATATTTCTTTATCACATATTTTTCTTATGAACAATGTGCACTATATTGTTCAGAAGGTGAAGGGCTCAGATCTTAGAGCTCTAATTGGAGATGACTGGCTGAGAAAGCACTCAGGTAAGGTCAGACAATATGCAACAAACTACCAAAGAGCTACTTGGATGAAAGTACTGTCTTGTTTAAGAGATGAAGGTCTTCATGTGGGTGGAAGTTTTTCTAGTGGGGTCTCTAAAACTGCCCTGAAGGAGAGGTTCAAAAGCTTCAATGCTGCATTCGAGGAAGTGCATAGGTCTCAGTCTACTTGGATTGTTCCTGATGCACAGCTGCGAGAGGAACTCCGAATATCCATAGCAGAGAAGTTGTTACCAGCATATAGGTCTTTCTTTGGCCGATTTAAGAACCATTTGGAAAGTGGGAGGCACTCTGAAATGTATATCAAATACTCACCAGAAGACTTGGAAAATACCCTTTTAGATTTCTTCGAGGGCTCTCCTGTGTCTATGCATGTAAGGAGGAGATCCAATTGA___CAGCTTCTAGAACCTACTTCCTTCTGAGATTATTAGCCTCTAATATCTATCCTTCTCTGTAAACCAACAGATATAGCTTTCTAGGGTTTCTTTTCATCTCCCCCTGTAATGGCAGTAGAAGATTGGACCAAGCTAAGATGCCTATTGAGCTTATACCCAAAGCACTTCATTCTTTTGCACTGTTGAAGGTCCTTGTGCCTTGTAAGCTTTTGAGGGTACCGAAGTAGCTTACTTACTGGTTGAATTCTGTCTGACTCATCTCCAGATTCTTGCCCTGTTAAAATGGGTTCAATTTGGTTGATTGAAGCAGCATTCTTCAAAGCGAAGGGAAGAGACCGCGAGGGGCATCCAGTGATCAGCATCGTTCTTCATTTTTGTAGCTTGTCATTCAACTTATTATTTGTATTCTGTACAAGGTCTAATAATCAGCATTAGGAAAATGCATTTCCTAGGATGCATTTGCCCCACACAGTACTTGTGCGGGGCAAATTTTTCGTTATGTAATGTTTGCTATATTTCAAGAATTTGATATCAAACTTTTCCTAAAGGAAGAACTGGCATGCTTCTGCAACTTGATGGCCTCTTAATGCTGTTGAAGCAGGGGAAACATTTGCTAGTAATATGGTTTCCCAATTGAAATTCAGAACACTTTCAGGC

Fln Alignment:

Contig1506___ENLDSAEKLILKWDMASSEAAKQSMIFEGQPQEAEKYLKTVDELQKLMESVSLPQADVH---------KAQNVLQIAMVRLEEEFRNLLLVHSEPLDPELVLNP---ASMASFRSLNESYRDRPSHSSXXXXXXXXXXXXVSHPLADKVCEMDLIPQDVIPDLHRIAERMVAAxxxxxxxxxxxxxxxSMVDESFLRLGIEKLSIGDVQRLEWETLEVKIKKWIRAAKVCIRMLFASEKRLCEQVFNGLDS-VGETCFSELAKGATMQLFNFSEAIAISRRSPEKLFKILDLYETLSELLPDIEMVFSDELCANVKTQASEILTRLGEAARGIFTEFENAIQRETSRTPIPGGTIHPITRYVMNYISFISDYKETLMKLVVNKPSQTSKLLPEGLIDLIGEYDKGSDSDDQSVLSLHLVWITLILQNNLEGKSKVYKDISLSHIFLMNNVHYIVQKVKGS-DLRALIGDDWLRKHSGKVRQYATNYQRATWMKVLSCLRDEGLHVGGSFSSGVSKTALKERFKSFNAAFEEVHRSQSTWIVPDAQLREELRISIAEKLLPAYRSFFGRFKNHLESGRHSEMYIKYSPEDLENTLLDFFEGSPVSMHVRRRS
B9N7F2______________EPFEDAQKIILRWDSTASEEARERMIFGGDRQEVDLYLQAVDEIQKSMSSTSISPPSSHHHDQDSNSNKVNSAIQIAMARLEDEFRNILINHTSPVEVDSLFIPDHAPAPASSLNHNTSSRADSSNSS------------ASYRSTSSIREIDLIPQEAVADLQSIAKRMISAxxxxxxxxxxxxxxxSAVDASFRRLGIEKLSIGDIQRLEWEALETKIRRWIRAAKVCVRILFASEKKLCEEIFYGIGTAIDDACFMETVKGPAIQLFNFAEAISIGRRSPEKMFKILDLHDALMDLLPDIEVVFESKSADSIRVQAAEILSRLAEAARGILSEFESAVLREPSRVPVPGGTIHPLTRYVMNYISLISDYKQTLIELIMSKPSTGSRYSGDPTTPDM----EFAELEGKTPLALHLIWIIVILQFNLEGKSKHYKDASLAHLFIMNNVHYIVQKIKGSPELREMIGDDYLRKLTGKFRQAATSYQRATWVSVLYCLRDEGLHVSGSFSSGVSKSALRERFKTFNAMFEEVHRTQATWLIPDSQLREELRISMSEKLIPAYRSFLGRFRSHIESGKHPENYIKYSVEDLESAVLDFFEGYPVSQHLRRRS

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
308	25		75		0.996473
311		75	25		0.996473
464		50		50	1.0
547		80		20	0.995493
548	20			80	0.995493
550	80	20			0.995493
555	20	80			0.995493
556		80	20		0.995493
2152	87		12		0.992554
2436		14		85	0.993533
2475	11			88	0.923564
2477			11	88	0.923564
2478		88	11		0.923564
2479			11	88	0.923564
2493		10		90	0.90298
2494	90		10		0.90298
2496	90	10			0.90298
2498		90		10	0.90298
2499			10	90	0.90298
2500	10			90	0.90298
2501		10		90	0.90298
2507		10	90		0.90298
2509			10	90	0.90298
2512	11			88	0.923564
2513		11		88	0.923564
2515		11		88	0.923564
2516	11	88			0.923564
2743			87	12	0.992554
2964		33		66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
971	982	TGA TGA TGA TGA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain