SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1492

Length: 2314 nt

UniGene Fasta

>sp_v3.0_unigene1492
GACAAACGAAGCAGGTTTAGATACAATGCCACGCAACTGCGAGCATTTGAAAGGGCCAATAACGAGAACTTTTCAACGCCAAAACGCATCGCAGACACGTCTGAGCGGTTTGCACAGGATTTGGAGACAGTATGGTTGATTTTGGGATTTGGGTGATGGCTTTGTAGCGCCAGGTTGTTCCAAAACAAGGTTCTTCGCAGACATTAAAAGGGTCCGTGACTTGCGACATTGAAAGCGCAGTTTTCTTTGATGTTTTTTTGACATGCAGTACAGAGCCCAGAACTCTGTGAACTGATCTGTTTTGATTCTGGTTGGGAGGGGAATTTAGGTTTTCAGGGTTTGAATGCCTATTCTGGTGTTCTTAAAGAGTTGATTGCTATTAGAGATGTCTTTCAGAAGTATTATCCAGGATGTGAGAGATGGTATCGGAAGTATTTCCAGGAGGAGTTTCGATGTGAAGTTTTCGTATAGTATGAGATCTCGGTCGCATAGTGCTGTGCATGACAGCCATTACAGGAGTCAGGTTTCGCTGCCGCAGAGCTGTTGGGCAAATATGCCGCCCGAGCTGCTCAGAGATGTTATTTCGAGAATCGAGGCAAGCGAGGGTGCTTGGCCTGCGCGGAAATACGTGGTTGCCTGTTCTGGGGTTTGCAGAAGTTGGAGGGCAATAACAAAGGAGATTGTCCAGACACCCCAACTCTCTGGAAAGCTCACTTTCCCAATTTCTCTTAGGCAGCCTGGGCCAAGAGACTTCCTTATTCAGTGTTTCATTAAGCGGGACAGAGCCACATCTAGCTATCATTTATACTTGGGTTTGACTGCAACACTTTCTGAGAATGGAAAATTTCTTCTTGCTGCTCGGAAATCAAGGAGGCCCACATGCACAGATTATATTGTTTCCCTTGATGCTGAAGACATGTCAAGAGGAAGCAACAGATACATTGGAAAGCTGAGATCAAATTTTCTAGGGACAAAGTTCACAATTTATGATAGCCAGCCACCTTGCACTGGTGCAATAGCATCAACAAGTCGTGCAGGTCGACGGGTGGGCTCAAAGCAAGTTTCGCCTAGGGTCCCAGCAGGGAGCTATGTTGTTGCCCACATTGCATACGAATTGAATGTTTTGGGAACAAGGGGCCCAAGACGCATGCAATGTCTGATGGATGCTGTACCGGCTTCAGCCATGGAAGCAGGAGGGAGTGCTCCTACTCCAACCGAATGCCCATTGAGTAGTTTAGATTCGTTGGCAACCCTCCCCCATTTTGGCTTAAAATCAGAGGTTATTGAGACCAGCTTTTTCTCTGGACCCATCATCAATAGCAACTGGAAGGAGGGTCCATTGCTCTTGAAAAATAAAGCTCCAAGGTGGCATGAACAGCTACAATGCTGGTGTTTGAATTTCAAAGGGCGTGTGACAGTTCCTTCTGTTAAAAATTTTCAACTTGTTGCAGCTACTGAGCCCGCTTTACCTGCGGTTCAAAGTGACCATGACAAGGTTATACTCCAATTTGGAAAAGTTGGAAAGGACACGTTTACCATGGATTATCGTTATCCACTCTCAGCTTTTCAGGCGTTTGCCATATGTCTTAGTAGTTTTGATACAAAGCTGGCCTGTGAATAGTGAGGGTCCAAAGCCATGGGCATTCATTCCAACTCCAGCAAGTGATAAATCGTAAATCAGTTGCTGGTGCTACTCCGCTTGGTAATTGCTTGTGGACTGTATTTTTTATACACATCCACTTAGCTTTTCTCATTTCCTTGTGTTCACAATGCCCCAGGGGTTGCAAGGTTTGTCACTGTTAAATAATGTTTTCAGTAGAGGGTGCGCAACAATTAGTTGCAGGCAATTATTAGAAATGATGTGTAAGGGTGCTGTTAGTCCAATTGATCTCAAGCTATTTGTTGTATATTACTTGGATGTACATAAAGTTTTCAGGGAGGCACGTGAGATTCTAATGCAGCAGAGGCAAGTTTCATTTGTCATACTGATGTTTGGATGATCATTGGAATTGCATTCACAAGTTAGAGATTCAGAGAACACTAATGCACGAAGAACTGTTTAGGCTAAGTTATTGTTTTAATTGGCTTTAGTGATAATCAGTTGTGAAAGCACATCTGCAGCTTTGAGACGGTTTCACAAGTAATTATCAATCGAACGCTTGAATGGAAAAGACGAGACAATGGAGTGTGTAATTCCGTATGGGAGTATGCCATTCCTCTGCGACTTATTGACTTCATATTGTATTTGCTCATCAAGCCGTGTGATCTGTTAATTCTTCTATGGAAATGGGTGTAAATTTTAGTGACTAATAAC

Ace file of the UniGene sp_v3.0_unigene1492

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tubby-like protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SPK2_PHYPA	-	-	0.0	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Sma3	Tubby protein	-	-	2.626e-15	-

Source	Gene names
Sma3	AT2G18280; AT2G47900; At1g25280; At1g43640; At1g47270; At1g53320; At1g61940; At1g76900; At2g18280; At2g47900; At3g06380; At5g18680; B1131G08.31; CHLREDRAFT_17453; F12M16.22; F17A22.29; F22K20.1; F24P17.15; F4F7.13; F7O12.7; F8G22.1; F8K4.13; GSVIVT0000512

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Tubby, C-terminal	IPR000007	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3		IPR013596	-	-
Sma3	Tubby, C-terminal, conserved site	IPR018066	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G47900.3	TLP3 tubby like protein 3 chr2:19611196-19612766 REVERSE LENGTH=407	64%
RefSeq	Arabidopsis thaliana	NP_001031558.1	Tubby-like F-box protein 3 [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002306697.1	f-box family protein [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUX5

Fln msg:

Fln protein: MSFRSIIQDVRDGIGSISRRSFDVKFSYSMRSRSHSAVHDSHYRSQVSLPQSCWANMPPELLRDVISRIEASEGAWPARKYVVACSGVCRSWRAITKEIVQTPQLSGKLTFPISLRQPGPRDFLIQCFIKRDRATSSYHLYLGLTATLSENGKFLLAARKSRRPTCTDYIVSLDAEDMSRGSNRYIGKLRSNFLGTKFTIYDSQPPCTGAIASTSRAGRRVGSKQVSPRVPAGSYVVAHIAYELNVLGTRGPRRMQCLMDAVPASAMEAGGSAPTPTECPLSSLDSLATLPHFGLKSEVIETSFFSGPIINSNWKEGPLLLKNKAPRWHEQLQCWCLNFKGRVTVPSVKNFQLVAATEPALPAVQSDHDKVILQFGKVGKDTFTMDYRYPLSAFQAFAICLSSFDTKLACE*

Protein Length: 413

Fln nts: GACAAACGAAGCAGGTTTAGATACAATGCCACGCAACTGCGAGCATTTGAAAGGGCCAATAACGAGAACTTTTCAACGCCAAAACGCATCGCAGACACGTCTGAGCGGTTTGCACAGGATTTGGAGACAGTATGGTTGATTTTGGGATTTGGGTGATGGCTTTGTAGCGCCAGGTTGTTCCAAAACAAGGTTCTTCGCAGACATTAAAAGGGTCCGTGACTTGCGACATTGAAAGCGCAGTTTTCTTTGATGTTTTTTTGACATGCAGTACAGAGCCCAGAACTCTGTGAACTGATCTGTTTTGATTCTGGTTGGGAGGGGAATTTAGGTTTTCAGGGTTTGAATGCCTATTCTGGTGTTCTTAAAGAGTTGATTGCTATTAGAG_-_ATGTCTTTCAGAAGTATTATCCAGGATGTGAGAGATGGTATCGGAAGTATTTCCAGGAGGAGTTTCGATGTGAAGTTTTCGTATAGTATGAGATCTCGGTCGCATAGTGCTGTGCATGACAGCCATTACAGGAGTCAGGTTTCGCTGCCGCAGAGCTGTTGGGCAAATATGCCGCCCGAGCTGCTCAGAGATGTTATTTCGAGAATCGAGGCAAGCGAGGGTGCTTGGCCTGCGCGGAAATACGTGGTTGCCTGTTCTGGGGTTTGCAGAAGTTGGAGGGCAATAACAAAGGAGATTGTCCAGACACCCCAACTCTCTGGAAAGCTCACTTTCCCAATTTCTCTTAGGCAGCCTGGGCCAAGAGACTTCCTTATTCAGTGTTTCATTAAGCGGGACAGAGCCACATCTAGCTATCATTTATACTTGGGTTTGACTGCAACACTTTCTGAGAATGGAAAATTTCTTCTTGCTGCTCGGAAATCAAGGAGGCCCACATGCACAGATTATATTGTTTCCCTTGATGCTGAAGACATGTCAAGAGGAAGCAACAGATACATTGGAAAGCTGAGATCAAATTTTCTAGGGACAAAGTTCACAATTTATGATAGCCAGCCACCTTGCACTGGTGCAATAGCATCAACAAGTCGTGCAGGTCGACGGGTGGGCTCAAAGCAAGTTTCGCCTAGGGTCCCAGCAGGGAGCTATGTTGTTGCCCACATTGCATACGAATTGAATGTTTTGGGAACAAGGGGCCCAAGACGCATGCAATGTCTGATGGATGCTGTACCGGCTTCAGCCATGGAAGCAGGAGGGAGTGCTCCTACTCCAACCGAATGCCCATTGAGTAGTTTAGATTCGTTGGCAACCCTCCCCCATTTTGGCTTAAAATCAGAGGTTATTGAGACCAGCTTTTTCTCTGGACCCATCATCAATAGCAACTGGAAGGAGGGTCCATTGCTCTTGAAAAATAAAGCTCCAAGGTGGCATGAACAGCTACAATGCTGGTGTTTGAATTTCAAAGGGCGTGTGACAGTTCCTTCTGTTAAAAATTTTCAACTTGTTGCAGCTACTGAGCCCGCTTTACCTGCGGTTCAAAGTGACCATGACAAGGTTATACTCCAATTTGGAAAAGTTGGAAAGGACACGTTTACCATGGATTATCGTTATCCACTCTCAGCTTTTCAGGCGTTTGCCATATGTCTTAGTAGTTTTGATACAAAGCTGGCCTGTGAATAG___TGAGGGTCCAAAGCCATGGGCATTCATTCCAACTCCAGCAAGTGATAAATCGTAAATCAGTTGCTGGTGCTACTCCGCTTGGTAATTGCTTGTGGACTGTATTTTTTATACACATCCACTTAGCTTTTCTCATTTCCTTGTGTTCACAATGCCCCAGGGGTTGCAAGGTTTGTCACTGTTAAATAATGTTTTCAGTAGAGGGTGCGCAACAATTAGTTGCAGGCAATTATTAGAAATGATGTGTAAGGGTGCTGTTAGTCCAATTGATCTCAAGCTATTTGTTGTATATTACTTGGATGTACATAAAGTTTTCAGGGAGGCACGTGAGATTCTAATGCAGCAGAGGCAAGTTTCATTTGTCATACTGATGTTTGGATGATCATTGGAATTGCATTCACAAGTTAGAGATTCAGAGAACACTAATGCACGAAGAACTGTTTAGGCTAAGTTATTGTTTTAATTGGCTTTAGTGATAATCAGTTGTGAAAGCACATCTGCAGCTTTGAGACGGTTTCACAAGTAATTATCAATCGAACGCTTGAATGGAAAAGACGAGACAATGGAGTGTGTAATTCCGTATGGGAGTATGCCATTCCTCTGCGACTTATTGACTTCATATTGTATTTGCTCATCAAGCCGTGTGATCTGTTAATTCTTCTATGGAAATGGGTGTAAATTTTAGTGACTAATAAC

Fln Alignment:

Contig1492___MSFRSIIQDVRDGIGSISRRSFDVKFSYSMRSRSHSAVHDSHYRSQVS---------LPQSCWANMPPELLRDVISRIEASEGAWPARKYVVACSGVCRSWRAITKEIVQTPQLSGKLTFPISLRQPGPRDFLIQCFIKRDRATSSYHLYLGLTATLSENGKFLLAARKSRRPTCTDYIVSLDAEDMSRGSNRYIGKLRSNFLGTKFTIYDSQPPCTGAIASTSRAGRRVGSKQVSPRVPAGSYVVAHIAYELNVLGTRGPRRMQCLMDAVPASAMEAGGSAPTPTECPLSSLD-SLATLPHFGLKSEVIETSFFSGPIINSNWKEGPLLLKNKAPRWHEQLQCWCLNFKGRVTVPSVKNFQLVAATEPALPAVQSDHDKVILQFGKVGKDTFTMDYRYPLSAFQAFAICLSSFDTKLACE
A9NUX5______________MTVKNIFQDMKGSIGSISRRSFEVKF---LRSRSQSAVDDLHYRSNANNKNNSNNGGLQCSLWVNMPPELIRDVIQRIEESESSWPLRKSVVACAGVCRTWRQITKELVKIPEMSGKLTFPISLKQPGSRDPSVQCFIKRDRATSTYQLYLSLTPTLSDNGKFLLAARKFRRATSTEYIISLDAEDMSRGSNTYVGKLRSNFLGTKFTIYDSQPPHSGAIASTSRAGRRVGAKQVSPRVPAGSYNIAHIGYELNVLGTRGPRRMQCIMHSIPASAVQPGGSAPTPVEPSITSLDHSLASCPTFGSKSCILESPSISEPLTNSNSKDEPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAPEPNPSVSQNDYDKVILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
454	14		85		0.993533
512	87		12		0.992554
681		10	90		0.90298
704		42	57		1.0
834	33			66	0.997452
866	75			25	0.996473
867	75		25		0.996473
868			25	75	0.996473
869		75	25		0.996473
898	20		80		0.995493
899		20		80	0.995493
1218	10	90			0.90298
1219			90	10	0.90298
1220	90			10	0.90298
1297	11			88	0.923564
1342		66		33	1.0
1660	20		80		0.995493
1683	40		60		1.0
1880	83	16			0.994512
1883		80	20		0.995493
1884		80		20	0.995493
1885	80		20		0.995493
1887		20		80	0.995493
1890	80		20		0.995493
1892	20	60	20		0.99255
1896	75	25			0.996473
1897			75	25	0.996473
1967	83			16	0.994512
1968		16	83		0.994512
1970		83		16	0.994512
1971	83		16		0.994512
1973		16	83		0.994512
1974		16		83	0.994512
1977		83	16		0.994512
1978	83		16		0.994512
1979		16		83	0.994512
1986		16		83	0.994512
1987	83			16	0.994512
1989	16			83	0.994512
2235		87		12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain