SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1474

Length: 2987 nt

UniGene Fasta

>sp_v3.0_unigene1474
TGATAAGAAAGGAGAGAAAGAGATCGAGAAAGATAAAATAAAAAGCCTTGATGGTGCAAACTTAGATAGCCTCTTGCAGCGGCTTCCGGGTTGTGTTAGTCGTGATCTTATTGACCAGTTGACAGTAGACTTTTGCTATCTGAATTCAAAAAGTAACAGGAAAAAGCTTGTGAGAGCAATATTCAATGTGCCTCGGACATCCTTAGAATTATTGCCTTATTATTCAAGAATGGTGGCAACATTGTCAACTTGCATGAAAGACGTAGCTTCAATGCTTCTCCAGCTGCTAGAAGAGGAGTTCAATTTTTTAATAAATAAGAAGGATCAAATGAACATTGAAACAAAGACGAGAAATATAAGATTCATTGGGGAATTGGCAAAGTTCAAAATTGCCCCACCAAGTCTTGTATTTACCTGCTTGAAGTCCTGCTTGGATGACTTCACTCATCACAATATTGATGTTGCATGCAATTTGCTCGAAACCTGTGGGCGTTTCTTGTATCGTTCACCTGAAACAACCATACGCATGGCAAACATGTTAGAAATAATGATGCGACTGAAAAATGTGAAAAATCTTGATGCTCGACACAGTACATTAGTTGAGAATGCTTATTATCTTTGTAAGCCTCCTGAAAAATCTGCCAGGGTTTCTAAAGTTCGGCCTCCTTTGCATCAGTATGTGCGGAAACTTCTTTTTTCAGACTTGGATAAACAGTCTATAGAGCATGTTCTCCGTCAACTTCGCAAACTACCCTGGAGTGAATGCGAACCATATGTCTTGAAGTGTTTTATGAAGGTTCACAAGGGAAAGTATAGTCAAGTACACCTTATTGCATCTCTTACGGCAGGCTTAAGTCGCCACCAAGAAGCATTTGCTGTTGCTGTTGTTGATGAGGTTTTGGAAGAGATCAGGCTAGGACTTGAGTTAAATGACTATGGAATGCAGCAGCGACGTATAGCACACATGCGCCTTCTAGGAGAGCTATACAGTTATCGTCTTGTTGATTCATCTGTGATTTTTGATACTCTTTATTTGGTTCTTTTCTTTGGACATGATACTGCAGAGCTTGACACACTGGATCCACCAGAGGACTGTTTTCGCATTCGGATGGTGATAACTTGTCTTCAGACATGTGGTCACTTCTTTGATAGAGGTTCTTCTAAACGGAGGCTTGATAAGTTTCTGGTCTTTTTTCAAAGATATATTCTTAGCAAAGGGGCCATAGCCCTGGATATTGAGTTTGATCTCCAGGACCTTTTTGCTGATTTGCGGCCAAAAATGATTCGATATTCATCTATTGAGGAAGCAGATGCTGTTATAAATGAGTTGGAAGAGCAGGAGCGTAATGTGTTTTCTGAAAAGATGGGCAGTGAAAAACATTCTGACACAGAAGGAGGCAAACCTGTTTCACATTCTGTTGGTCCCGTTGTAGGTAATGGACAAACAGCAGTGAATGGGATGGAGGAAAATGGTACGGGGCTTGATGATGGAGAGAGTGAAAGTGAATTAGAAAGCAGTAGCTTGGAGCCTGATGGCCATGAAGATGAGGAAGACTTGGATGAAGACAAGTATGTGGATCATGACGATGAAGGTGATGACGAAAACGAAGATGAAGATGGTGGAGAACCTGTGGCCTCTGAAGAGGAAGAAAATGTGCAGGTAAGACAGAAGAAACTAATGGATGTTGATCCAGTGGAACAAGCTGAATTTGAGCGTGAGTTAAGGGCTGTTATGCAGGAGAGTTTAGATTCTCGCAAATTAGAACTGCGGGCACGTCCTATGCTAAACATGGCAATTCCCATGAATCTTTTTGAAGGATCCAAAGAGCAGAGCAGAATAACTGAGATAGAAAGTGGAGATGAGGTTGTAGACGAAGAAAACAGTGAAAACAGTGTCTCTTTTCGAGTTCTTGTGAAGAAAGGTAACAAGCAACAAACCAAGCAATTGAATATTCCAAGGGGATGCTCTCTTGTGCAAAGTACAAAACAAAAAGAAGCTGCTGAACTTGAAGAGAAACAGGACATCAAGAGACTGGTTCTCGAATACAATGAGCGGGAGGAAGAGGATTTATCCACTGGTGCAGCACAGCCAATTAATTGGTCCCCAGCAAATTCAGGTATCTCAAATAGAATGCCAAGTGGCCGGGGAGGATGGGAAGGTTCTGCACGACCGCTCAGTGCACGTCAAAGGCATCATCCCATAGGTGCTAGCCATGGCCGACGGAGATAGTGTGTTACTAAAATCATTTCTGTTATATCTTGGTTCTCTCGATGGCTGTGTGGGATTGTTCCTCCTTGATGTCTCTCATATAACTGAAGCGAAGAAATGGTTGTGATGTTGTGAGAGGTATCCCAATTTGAACGTTGTTATTAATTATATGATGTTGAAGCATGGATGCTTCTACAACTGTACTCTGTGGTTGTACGATACAGTGAGATAACTGCTGTTCCTTTTAACAGGCGTCTTTCTTAAGGTCTTATGTGAGTTTCAGTGCAGATGCGGGAACTGTGAACATGGTGCAAGTCAAGACTTTCATTTCTAAAATATGGACAGTAATGTTGGTGTCTGGGAGAAAAATAGTTTTACAGTTGTATTGCACAACTACAGCACTCGGTCATAATTTTCAACAGAAACAGGACTTGGCTCGACATTTTAATGTATGGTGTATTTATACTTACGTAGCTGTTCTGTATGTGGCATTCAAGTCATTATCAATTTTTGTACCCTTCGGAGCTGGGCATGATTATATTTGAAAGAATTTGGATCTGATCTGTGAAAAAACACCTATTTCCATTTTCGGTGGAGGAAGATGGAGTTTTAAACATTTAGTTGGTTTTCATCCAAAAGTTTGTTTGTTGGATTTTCTAGTCATGAGCGATTAGTGCATGGCTTTCTTAGACAATGCTTTTTGATGCCTATTAAAATGGGAGTATCAGTGTATATGTTGAATCTGGATTTGCAGAGTGATAGAGGTTTATTTGGATAA

Ace file of the UniGene sp_v3.0_unigene1474

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Initiation factor eIF-4 gamma, middle; Up-frameshift suppressor 2 [Medicago truncatula]	-	-	0.0	60%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	70%

Source	Gene names
Sma3	At2g39260; B1250G12.14; CHLREDRAFT_119808; GSVIVT00018278001; MtrDRAFT_AC151520g31v2; Os02g0631500; Os04g0523200; OsI_08170; OsJ_07617; PHATRDRAFT_50132; PHYPADRAFT_135783; POPTRDRAFT_421447; POPTRDRAFT_886092; RCOM_1070440;

Source	GOs	Term	Type	Identity
Sma3	translation initiation factor activity	GO:0003743	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	RNA metabolic process	GO:0016070	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	MIF4G-like, type 3	IPR003890	-	-
Sma3	Up-frameshift suppressor 2	IPR007193	-	-
Sma3	MIF4-like, type 1/2/3	IPR016021	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G39260.1	" binding;RNA binding chr2:16392288-16399588 REVERSE LENGTH=1181"	62%
RefSeq	Arabidopsis thaliana	NP_181459.4	RNA binding protein [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002315268.1	predicted protein [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: F6HNK8

Fln msg: your sequence is shorter than subject: 743 - 1232

Fln protein: DKKGEKEIEKDKIKSLDGANLDSLLQRLPGCVSRDLIDQLTVDFCYLNSKSNRKKLVRAIFNVPRTSLELLPYYSRMVATLSTCMKDVASMLLQLLEEEFNFLINKKDQMNIETKTRNIRFIGELAKFKIAPPSLVFTCLKSCLDDFTHHNIDVACNLLETCGRFLYRSPETTIRMANMLEIMMRLKNVKNLDARHSTLVENAYYLCKPPEKSARVSKVRPPLHQYVRKLLFSDLDKQSIEHVLRQLRKLPWSECEPYVLKCFMKVHKGKYSQVHLIASLTAGLSRHQEAFAVAVVDEVLEEIRLGLELNDYGMQQRRIAHMRLLGELYSYRLVDSSVIFDTLYLVLFFGHDTAELDTLDPPEDCFRIRMVITCLQTCGHFFDRGSSKRRLDKFLVFFQRYILSKGAIALDIEFDLQDLFADLRPKMIRYSSIEEADAVINELEEQERNVFSEKMGSEKHSDTEGGKPVSHSVGPVVGNGQTAVNGMEENGTGLDDGESESELESSSLEPDGHEDEEDLDEDKYVDHDDEGDDENEDEDGGEPVASEEEENVQVRQKKLMDVDPVEQAEFERELRAVMQESLDSRKLELRARPMLNMAIPMNLFEGSKEQSRITEIESGDEVVDEENSENSVSFRVLVKKGNKQQTKQLNIPRGCSLVQSTKQKEAAELEEKQDIKRLVLEYNEREEEDLSTGAAQPINWSPANSGISNRMPSGRGGWEGSARPLSARQRHHPIGASHGRRR*

Protein Length: 744

Fln nts: TGATAAGAAAGGAGAGAAAGAGATCGAGAAAGATAAAATAAAAAGCCTTGATGGTGCAAACTTAGATAGCCTCTTGCAGCGGCTTCCGGGTTGTGTTAGTCGTGATCTTATTGACCAGTTGACAGTAGACTTTTGCTATCTGAATTCAAAAAGTAACAGGAAAAAGCTTGTGAGAGCAATATTCAATGTGCCTCGGACATCCTTAGAATTATTGCCTTATTATTCAAGAATGGTGGCAACATTGTCAACTTGCATGAAAGACGTAGCTTCAATGCTTCTCCAGCTGCTAGAAGAGGAGTTCAATTTTTTAATAAATAAGAAGGATCAAATGAACATTGAAACAAAGACGAGAAATATAAGATTCATTGGGGAATTGGCAAAGTTCAAAATTGCCCCACCAAGTCTTGTATTTACCTGCTTGAAGTCCTGCTTGGATGACTTCACTCATCACAATATTGATGTTGCATGCAATTTGCTCGAAACCTGTGGGCGTTTCTTGTATCGTTCACCTGAAACAACCATACGCATGGCAAACATGTTAGAAATAATGATGCGACTGAAAAATGTGAAAAATCTTGATGCTCGACACAGTACATTAGTTGAGAATGCTTATTATCTTTGTAAGCCTCCTGAAAAATCTGCCAGGGTTTCTAAAGTTCGGCCTCCTTTGCATCAGTATGTGCGGAAACTTCTTTTTTCAGACTTGGATAAACAGTCTATAGAGCATGTTCTCCGTCAACTTCGCAAACTACCCTGGAGTGAATGCGAACCATATGTCTTGAAGTGTTTTATGAAGGTTCACAAGGGAAAGTATAGTCAAGTACACCTTATTGCATCTCTTACGGCAGGCTTAAGTCGCCACCAAGAAGCATTTGCTGTTGCTGTTGTTGATGAGGTTTTGGAAGAGATCAGGCTAGGACTTGAGTTAAATGACTATGGAATGCAGCAGCGACGTATAGCACACATGCGCCTTCTAGGAGAGCTATACAGTTATCGTCTTGTTGATTCATCTGTGATTTTTGATACTCTTTATTTGGTTCTTTTCTTTGGACATGATACTGCAGAGCTTGACACACTGGATCCACCAGAGGACTGTTTTCGCATTCGGATGGTGATAACTTGTCTTCAGACATGTGGTCACTTCTTTGATAGAGGTTCTTCTAAACGGAGGCTTGATAAGTTTCTGGTCTTTTTTCAAAGATATATTCTTAGCAAAGGGGCCATAGCCCTGGATATTGAGTTTGATCTCCAGGACCTTTTTGCTGATTTGCGGCCAAAAATGATTCGATATTCATCTATTGAGGAAGCAGATGCTGTTATAAATGAGTTGGAAGAGCAGGAGCGTAATGTGTTTTCTGAAAAGATGGGCAGTGAAAAACATTCTGACACAGAAGGAGGCAAACCTGTTTCACATTCTGTTGGTCCCGTTGTAGGTAATGGACAAACAGCAGTGAATGGGATGGAGGAAAATGGTACGGGGCTTGATGATGGAGAGAGTGAAAGTGAATTAGAAAGCAGTAGCTTGGAGCCTGATGGCCATGAAGATGAGGAAGACTTGGATGAAGACAAGTATGTGGATCATGACGATGAAGGTGATGACGAAAACGAAGATGAAGATGGTGGAGAACCTGTGGCCTCTGAAGAGGAAGAAAATGTGCAGGTAAGACAGAAGAAACTAATGGATGTTGATCCAGTGGAACAAGCTGAATTTGAGCGTGAGTTAAGGGCTGTTATGCAGGAGAGTTTAGATTCTCGCAAATTAGAACTGCGGGCACGTCCTATGCTAAACATGGCAATTCCCATGAATCTTTTTGAAGGATCCAAAGAGCAGAGCAGAATAACTGAGATAGAAAGTGGAGATGAGGTTGTAGACGAAGAAAACAGTGAAAACAGTGTCTCTTTTCGAGTTCTTGTGAAGAAAGGTAACAAGCAACAAACCAAGCAATTGAATATTCCAAGGGGATGCTCTCTTGTGCAAAGTACAAAACAAAAAGAAGCTGCTGAACTTGAAGAGAAACAGGACATCAAGAGACTGGTTCTCGAATACAATGAGCGGGAGGAAGAGGATTTATCCACTGGTGCAGCACAGCCAATTAATTGGTCCCCAGCAAATTCAGGTATCTCAAATAGAATGCCAAGTGGCCGGGGAGGATGGGAAGGTTCTGCACGACCGCTCAGTGCACGTCAAAGGCATCATCCCATAGGTGCTAGCCATGGCCGACGGAGATAG___TGTGTTACTAAAATCATTTCTGTTATATCTTGGTTCTCTCGATGGCTGTGTGGGATTGTTCCTCCTTGATGTCTCTCATATAACTGAAGCGAAGAAATGGTTGTGATGTTGTGAGAGGTATCCCAATTTGAACGTTGTTATTAATTATATGATGTTGAAGCATGGATGCTTCTACAACTGTACTCTGTGGTTGTACGATACAGTGAGATAACTGCTGTTCCTTTTAACAGGCGTCTTTCTTAAGGTCTTATGTGAGTTTCAGTGCAGATGCGGGAACTGTGAACATGGTGCAAGTCAAGACTTTCATTTCTAAAATATGGACAGTAATGTTGGTGTCTGGGAGAAAAATAGTTTTACAGTTGTATTGCACAACTACAGCACTCGGTCATAATTTTCAACAGAAACAGGACTTGGCTCGACATTTTAATGTATGGTGTATTTATACTTACGTAGCTGTTCTGTATGTGGCATTCAAGTCATTATCAATTTTTGTACCCTTCGGAGCTGGGCATGATTATATTTGAAAGAATTTGGATCTGATCTGTGAAAAAACACCTATTTCCATTTTCGGTGGAGGAAGATGGAGTTTTAAACATTTAGTTGGTTTTCATCCAAAAGTTTGTTTGTTGGATTTTCTAGTCATGAGCGATTAGTGCATGGCTTTCTTAGACAATGCTTTTTGATGCCTATTAAAATGGGAGTATCAGTGTATATGTTGAATCTGGATTTGCAGAGTGATAGAGGTTTATTTGGATAA

Fln Alignment:

Contig1474___LDGANLDSLLQRLPGCVSRDLIDQLTVDFCYLNSKSNRKKLVRAIFNVPRTSLELLPYYSRMVATLSTCMKDVASMXXXXXXXXFNFLINKKDQMNIETKTRNIRFIGELAKFKIAPPSLVFTCLKSCLDDFTHHNIDVACNLLETCGRFLYRSPETTIRMANMLEIMMRLKNVKNLDARHSTLVENAYYLCKPPEKSARVSKVRPPLHQYVRKLLFSDLDKQSIEHVLRQLRKLPWSECEPYVLKCFMKVHKGKYSQVHLIASLTAGLSRHQEAFAVAVVDEVLEEIRLGLELNDYGMQQRRIAHMRLLGELYSYRLVDSSVIFDTLYLVLFFGHDTAELDTLDPPEDCFRIRMVITCLQTCGHFFDRGSSKRRLDKFLVFFQRYILSKGAIALDIEFDLQDLFADLRPKMIRYSSIEEADAVINELEEQERNVFSEKMGSEKHSDTEGGKPVSHSVGPV-VGNGQTAVNGMEENGTGLDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVASEEEENVQVRQKKLMDVDPVEQAEFERELRAVMQ--------ESLDSRKLELRARPMLNMAIPMNLFEGSKEQSR---ITEIXXXXXXXXXXXXXXXXXFRVLVKKGNKQQTKQLNIPRGCSLVQSTXXXXXXXXXXXXDIKRLVLEYNEREEEDLSTGAAQPINWSPANSGISNRMPSGRGGWEGSARPLSARQRHHPI----GASHGRRR
F6HNK8______________LEGTNLDGLLQRLPGCVSRDLIDQLTVDFCYLNSKSNRKRLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSSMLLQLLEEEFNFLINKKDQMNIETKIRNIRFLGELCKFRIAPAGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSARVSKVRPPLHQYIRKLLFSDLDKSSIEHVLRQLRKLPWSECEPYLLKCFMKVHRGKYGQIHLIASLTSGLSRYHDDFAVSVVDEVLEEIRLGLELNDYGMQQRRIAHMRFLGELYNYEHVDSSVIFDTLYLILAFGHETAEQDVLDPPEDCFRIRMVITLLETCGHYFDRGSSKRKLDRFLIHFQRYILSKGALPLDIEFDLQDLFADLRPNMTRYLSIEEVSAALIELEEHERTYTTDKANSEKYSDTE--KPSSRTTSNTSSANGQSPANGVEENG-GAHEDVIGESDSDSGSGTIDPEGHDEEEELDEENHDDGCDSEDDEDDGGGP-ASDEDDEVHVRQ-KVAEVDPQEEADFDRELKALLQARFSLMLSESLDSRKLELRARPTLNMMIPMNVFEGSTKDHHGRGVEGESGDEILDEEAGGSKEVRVKVLVKRGNKQQTKQMFIPRDCSLVQSTKQKEAAELEEKQDIKRLILEYNDREEEELNGVGTQTMSWTPSGGSRVSRGSS----WEG-GRTSGARHRHHQNYSGGGFYYGRRK

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
1595	25		75		0.996473
1599			25	75	0.996473
1701	83		16		0.994512
1702		83	16		0.994512
1703	83		16		0.994512
1974		14		85	0.993533
2465	45		54		1.0
2502	12		87		0.992554
2504	12		87		0.992554
2505			87	12	0.992554
2506			87	12	0.992554
2537		40		60	1.0
2577	80	20			0.995493
2842		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain