SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1461

Length: 921 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene1461 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Early nodulin, putative n=2 Tax=fabids RepID=B9SEN5_RICCO	-	-	7.0e-17	55%
FL-Next	sp=Early nodulin-93; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	61%
Sma3	Early nodulin	-	-	1.848e-11	-

Source	Gene names
Sma3	57h21.33; 57h21.34; At5g25940; GSVIVT00016856001; GmENOD93; Os02g0227200; Os06g0141700; Os06g0142200; Os06g0142300; Os06g0142400; OsENOD93a; OsENOD93b; OsI_06438; OsI_21578; OsI_21579; OsI_21584; OsI_21585; OsI_21586; OsJ_05958; OsJ_20076; OsJ_20082; OsJ_

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	nodulation	GO:0009877	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Early nodulin 93 ENOD93 protein	IPR005050	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G25940.1	early nodulin-related chr5:9054252-9055151 REVERSE LENGTH=115	5.0e-14	65%
RefSeq	Arabidopsis thaliana	NP_197966.1	early nodulin-related protein [Arabidopsis thaliana]	7.0e-14	65%
RefSeq	Populus trichocarpa	XP_002305557.1	predicted protein [Populus trichocarpa]	2.0e-22	54%

Full-Lengther Next Prediction

SNPs (tot: 5)

Position	A %	C %	G %	Probability
364		50	50	1.0
490	66		33	0.997452
526	20		80	0.995493
527		80	20	0.995493
604		33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain