SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1444

Length: 1904 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene1444

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative lysophospholipase 2 [Oryza sativa Japonica Group] dbj\|BAG95194.1\| unnamed protein product [Oryza sativa Japonica Group] dbj\|BAG88118.1\| unnamed protein product [Oryza sativa Japonica Group]	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Phospholipase/carboxylesterase/thioesterase	IPR003140	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G20060.2	alpha/beta-Hydrolases superfamily protein chr5:6776800-6779447 FORWARD LENGTH=252	71%
RefSeq	Arabidopsis thaliana	NP_001031909.1	phospholipase/carboxylesterase family protein [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002308652.1	predicted protein [Populus trichocarpa]	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKX3

Fln msg:

Fln protein: MSSGSTSNFSSGSRSQRRTFEYGRTHVVKPKGKHQATIVWLHGLGDNGSSWSQLLETLPLPNIKWICPTAPTRPIALFGGFPSTAWFDVGDISEDAPADLEGLDSSAAHVANLLSTEPAEIKLGVGGFSMGAAISLYSATCCVYGKYSNGDPYPVNISAAVGLSGWLPSAKDLQNKLRESQEAVKRAQTMPIFMCHGKADDVVIYKHGEKSAQVLEASGFGNLTFKSYKGLGHYTIPEETEDVCRWLSVNLGLEGTRS*

Protein Length: 260

Fln nts: GATTAGATTCCTGGAGCATATTCTGTGAAGAGTTTGAAGCTGGCATATTACAAAGGTTTCTTTCTTTAATAAAATGATTTAAATGGGATAAATTAAAATTCAACAACAATCTCATGTTGATGGTTTAATGTTTACCATATTTGACATATTCCTTACCATATTTGTCCCAACTTCCATCTTTATTGGAGGAGGGTTTTGATCTTCCATCTTTATTGGAGGAGGGTTTTAATTTTGATCAAAACCCACGATGCTCCTCAGCGCACATTTAGTTGGTGGTGGGAGCTATCAGCTTTATGCGCTGATTCCCTGGGAGCTTGTGAAAAACGAGTCGTTTTCAGTCCCGAAGTGGCTCTGAAATCGAACAAACCCTCTTCGATTCGGACTAGATTTGTAACAAATTTAAAGCTATTTATATAGTTCTTGGTTTTGCGTTTTGTAAATCAGATCAGGTCTGTATTATCTCAGGTGGGCAAGAAGAGCTATTGTTCGCTGTTCAGTACGGGAAATTATATCCGGAAATTCACA_-_ATGAGTAGCGGAAGTACCTCCAATTTTAGCTCTGGAAGTAGGTCACAAAGGCGCACATTTGAGTATGGGAGAACACATGTAGTCAAACCAAAGGGGAAACATCAGGCCACCATTGTGTGGCTTCATGGGCTCGGTGACAATGGTTCAAGTTGGTCCCAGCTCTTGGAAACGCTTCCTCTTCCTAATATAAAATGGATATGCCCAACAGCTCCTACTCGCCCAATAGCTCTTTTTGGTGGTTTTCCCTCCACTGCTTGGTTTGATGTTGGTGACATTTCTGAAGATGCTCCTGCTGACTTGGAAGGCTTAGATTCTTCAGCAGCACATGTAGCAAACCTATTATCAACCGAGCCCGCTGAAATCAAACTTGGTGTTGGAGGTTTCAGTATGGGTGCAGCAATTTCCTTGTATTCAGCAACTTGTTGTGTTTATGGGAAGTACTCTAATGGCGATCCATATCCAGTTAATATTAGTGCAGCTGTTGGCTTAAGTGGGTGGCTTCCTTCTGCCAAGGACTTACAGAACAAGTTACGAGAGTCTCAGGAGGCTGTAAAGCGTGCACAAACGATGCCTATTTTTATGTGTCATGGTAAAGCGGATGATGTTGTCATTTACAAACATGGAGAAAAGTCTGCTCAAGTTTTGGAGGCCTCTGGATTTGGCAATTTGACTTTCAAAAGTTACAAAGGGTTGGGTCATTATACAATTCCTGAAGAAACGGAGGATGTTTGTCGATGGTTGTCAGTAAACCTAGGACTTGAGGGCACACGCTCTTAA___TTACAAAACCTATCTGCAAATAAGGATAGATGTGGAAACATGCGATTTGATTCAAGCATATCGATGTTCACATGAGAGTCAAGGTTCATTCAAAGGGTTTATAATTCGGGGCAAGCAACTTTAGATCTGTGATTCATTTTCATATGTAATTAAAGGGTATTATGGTGAGAGCTTTACCAGGTGCATCTGAATTTTTTGATTGTTCACAAGAATCTGCCGCTGGCTGATCAACTCATTATATTTTCTAATGCTAACAAGGATTCTTGGTTTGCGTTCAAATTTATAACTCCAAATTATGATGTGAAATTAATTGGTGTGGAGATGTGGTGGAAACTTAAGTTAATTTTTAAGATTTTGAGTACAAACAACTCTGCATTCTATTTTTTGGCCCTCGAGTGCATCCGACAACAGTTGGATGCTATAGTATAGTTGGGAGAAGCAGCGTTAAGATATGATCTGAGGAAAGCTAAGCTTTCATTATGTGCTGTTATCTACTACATAATTTTTTCCATCTCACACATTTTCCCTCTTATTTTTCTGCTGAATAGGTGACAGATTCTGACAAGTCTTACATATCTAGTCACGTGGTTTGTGTTCAAAAT

Fln Alignment:

Contig1444___QRRTFEYGRTHVVKPKGKHQATIVWLHGLGDNGSSWSQLLETLPLPNIKWICPTAPTRPIALFGGFPSTAWFDVGDISEDAPADLEGLDSSAAHVANLLSTEPAEIKLGVGGFSMGAAISLYSATCCVYGKYSNGDPYPVNISAAVGLSGWLPSAKDLQNKLRESQEAVKRAQTMPIFMCHGKADDVVIYKHGEKSAQVLEASGFGNLTFKSYKGLGHYTIPEETEDVCRWLSVNLGLEGTRS
B8LKX3______________QRRTFEYGRTHVVKPKGKHQATIVWLHGLGDNGSSWSQLLEMLPLPNIKWICPTAPTRPIALFGGFPSTAWFDVGDLSEDAPADLEGLDSSAAHVANLLSTEPAEIKLGVGGFSMGAAISLYSATCCVHGKYSNGDPYLVDISAAVGLSGWLPCAKDLQNKLRVSQEAVKRAQTMPLLLCHGKVDDVVIYKHGEKSAQALEASGFSNMTFKSYKGLGHYTIPEEMEDVCRWLSVNLGLEGTRS

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
888			3	96	0.99245
1093	33		66		1.0
1523		97		2	0.97849
1578	6	11		79	1.0
1592		90	9		0.999872
1666	88		11		0.923564
1728		16		83	0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain