SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1431

Length: 7160 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene1431
AAAAAACTGAAATACAAAAAGATTGGCCCGTGTAAAATTCTGCGTAAATTTTCAGCCAATGTTTATGAATTACAACTACCTCCACGGATAGGCATATCGACCATCTTCAACGTGGCAGATTTGTTTCCATATATTGCCAGTCCTGAAGACGATAGTACAACACGACCTACATGAGACACGTAGGAGGAAAGAAACACTTGGATGAGGCAAATGCCTTCAGCTTAGCCCCTTGAGATCGAGAGGATCCTCGACACTCAAGTGGCCAAGCGAACTTGTCGGAAGGAATACCTACAATATCTTCTCAAGTGGAAGAACCCTCCCATTGAGGATAATTCCTGACTTGACGTCGGACGAATACAGCAGGCAAGTTATTCAGTCGAGGAGCTCGTGCACTGGAGCCATGAATTTTTTTTCTTACCCCAGGAGCTTGATGCAGGAGCATCCAAATGAGGGTATCATGGTTGGGGTGTTTGGTCTCAGCTAGGAAGAATAGTTTCACACTCATCGTTTAGTTTCATTTCCATTTTTTGGTTAAAGTAGTGTTTAAGGGCTTGCATTTTGTTTTTATTATTTTAAATGGTAATTAGGAACATCATGGTTAAAGGAGGGTTGTTACAACCACCTTCTTCTTTTGGTTTTTTTCAATTAACAGTTGTCTTCGACAAAAAAATTAATTTTCCAACAGAGCAAGAAAACAAAGAAACGGTTTTCACAACTATGTAACTACCAATGTAACTGTGAGTAGTTGTGAGAAATTGTCTCGAAAATGGTACAAAAACAAGCATATTATATTTTGTAGAGGTTAGATTACGAGAGACAGAATAGAAGCAAGAAAAAAAATAAGAATTTCATTTCTGTGCAAACCATCCGTATCCATTTACAGTTTTATTTTAATCTCTTTCCATTTAACTACTGTGTATTGAGCAAGTCAGAGAAGTGAAATTCATTTACAGCTAACCATTAATCTTTCATTAAATCACTGTGTATATCGACCGAGACAGAGCAACGAATTCACTGGCAGCTAATTGTTAAACCCTTCCATACAACTACTGTGTGCATTTGACAAAGAACAGAGTGATGTAATTTTTTTCTTTCTCTTTCCCAAAACAACTAGTTCTACCAACTACCTAGTAACATAGAGTTTCAAGGACAGAAATAGCAACATCTGAAGACATTCGAACATCAAAGAGTGAAATTATAGTTCCAGCCAACAATCAATCCCAAGCCCACAGAGCATAGACAAATGACACGGAGAAGCCACTACAAAATCAACAACAACTGCTTAAAAACGACTGCATTGCACACCCAGGTAACTCATAGTAGTATATACAGAATTCTTTCTTTTTCAAATTACAGCCTTGTGCGAAAATAAGATACAAAAATACCATAACAAAAATTACCCAGACGGGAAGAGTCTCATGAAAGACAATCCAAATAGACCCAGGGTTTGAAAACCTAGAAATATCCAAAGACTGCCGAGAACATAAATAATATACCAAAAAAAGGCATAGCCAAGGGCGGCCAATGACAACCTAAGAGCCAAGCCTCTCAGAACAACATAACTACTAGAAACCCAGATGTTGGAACCACAAACAGAATAAAAAAATGACATATATAAATCAGTGACGAGGAGCGACCCTACCGGGTTCATCCAAACAACGACAGTTGTGGAAGCGGTCGTCCCAAACCACCGCCCACTAGAAGAGTAGACAGTGTCGGCGCAAAGAACCCCAACCAGGTCGCAGCCACGGGAGGAAACCCCTTGCTAAGCAAAGCCGAGGACTCGGGCCCTTGTGACCGCAACCTGTAAGGAAACAACGCATAGGAAGAACCAGTTAACCAGTAGCTCGAGTAAGCAAGTAGACAAGCAAATATATAGTGAAGGCACACAGAGGACCATAGAGTTTCAGGATAGAGAAAACCCTCCAACAAAACCGACTGAGCCATCAACACATTGCCCAGGTGAGACCAACCGAACAGCATAGCAGGGAAGGCAAGTGGAGCTGCCAAGTCACCGACAAAAGAACCCACATCCGGTTGTGGACTGAACACCATTGTAAATCCACAACACAGTCGTAGACAAACTGTCAACAAACCCTCACCGCGAGCAGAGCAAGTCCAGGAGCCAAAGTGACAAGTGAGTGCGAAGTGGAGGAGTATAGTTGAGGCGCGGGAGGGTGAAAACCGAGGGCAAGGATAGGTGTCTCCTCACACCTACCTCCGTACCTAGAAATTAACCAAGCTATCAAGCCAAACCTAAAATATCTGTATTAATCATCAGATTAGTGATAAACATAATTGCAATTGATTTTATTCGTTCATTAATAATCTGAAGAGTGGATACCACCAGATCTGAATTAATGAAGGAGACGAATGGAAGGCAGCCTTTAAGACCAATGAAGCTTTGTATGAGTGGCTAGTGATGCCATTCGGGTTAAGCAATGCCCCTAGTACTTTTATGCGCTTAATGAATGAGATGTTAAAGGAATTCATTGGAAAGTTCGTGATTGTATATCTTGATGATATATTGATTTTTAGTAAGACCATAGGAGAACATTTTCGACATGTGCTAGAGAAGTTTCAGCAAAACAAGTTGCCAATAAATCTGACAAAAAAAAATGTTCTTTTCTTCAGAGGGAATTAGTATATTTGGGTTTTGTGATTGCAAAAAATGAGCTAAATATTGACCCAGAGAAGATTACAGCAATCATTAGCTGGCCATCCCCAAAAAGTTTGTTTGAGGTACGCAGTTTTTATGGGTTGGCAAGTGAGATCTACGCACCTATGTTGGATACTATAAAAAAGGCAAGTCAGCCTTTCTGTTGGACTAAAGTAGCAGAGAAAAGTTTTCAACTACTAAAGAAGAAGATTATTGAAAGACCAATCCTGAGATTGCCAGATTTTAACAAGATTTTTCAGGTTCGTTGTGATGCCAGTGTATAGCCATTGGGGCCATACTCAGCTAGGAAGACAAACCCGTTTCCTATTTCAGCGAAAAACTGAACGAAAGCAGGCAGAAGTACTCATCTTACGACAAGGAGTTCTATGTTGTCGTCCAAGCATTGAAGCATTGGAGGCACTATTTTCTAGGGAATGAATTTGTTTTGTTTTCCGATAATTTTGCATTGCAGTACGTTATGCAACAGCATAAGCTGAACCACAAGCATGCAAAATGGGTTGAGTACTTGCAGAGTTTCACGTTTGTCTTGAAGCATATCAGTGGACAGGCCAACAAGGTTGTAGATGCATTGAGCAGAAGAGATTTTCTCTTACAAGAAAGTACGATACAAGTATTGGGTTTTGAGCACCTGACAGACTTGTATTAGACAAATGCAGATTTCAAGGAGGCTTATGAAGCCTACCAAAATCCTTTGTTGAGTAACAATAGTCCGTGGCTGGACTATAAATTACAAGAGAAGTTGTTGTTTAAAGGGGGACAATTATGCATTCCTGACTGTTTTATGAGGGAGAACATCATCAAGGAGAAGCACAACGGAGGTCTAGCCGAACATTTCGGCATTGATAAGACCTCAGACCAGCTTAGCCATTTTTATTACTGGCCAAGGATGCGAAGGGATGTGCAGCGATTTGTAACTAGATGTAAAGTGTGTCAGTTGACGAAAGGACACAGTTAGAATACGAGACTATACACACCACTGCCTATTCCGAGTAAACCGTGGGACTTAGTCAGCTTGGACTTTGTCCGCAGCGGAGTTACGATTCTGTGATGGTGGTAGTGGACGGTTCTCAAAAATGGCACATTTCATCCCTTGTAAAAAAATCAGCGATGCCACTCACATGGCCCACTTGTTTTTCACGGAGATAGTCAGGCTACACGGTCTGCTTAAGTCTATAGTTTCCGACAAGGACGTGAAATTTACAGGACACTTTTGGCGCACCTTGTGGAAGAAGATGGACACACAGTTAAGTGTTGTCTCCGCTTATCACCCACAGACCAACGGACAAACAGAGGTGGTAAACAGGAGCCTGGGAAACCTGATACGAAGCTTGATCAGAGAAAATTCACGAATGTGGGATCGTGTACTTGCCCAGGCGGAGTTTGCTTACAACGACTCACCAAATCACAGCACGGGATACAGTCCTTTTTAGATCTTATATGGCATGCATCCTCACGGAGTGCATGAGTTATGAGATCAAGGACAGCAAGAAAAACGTAGTGCTGATGGGGAAGATTCTGCCAAAGCAATGAATGACCTACACGAGCAGGTAAAGACGAAGTTGCAGGACAGCAGTCAGAAGTATAAGCAGCGAGCAGATATGAAGCAGTGAGAAGTACAATTTAATGTGGGGGATGAAGTCCTCGCACATTTATGCAGAGAACGGTTTGCTAGGGGTGAATACAAAAAACTGAAATACAAAAAGATTGGCCCGTGTAAAATTCTGCGTAAATTTTCAGCCAATGTTTATGAATTACAACTACCTCCACGGATAGGCATATCGACCATCTTCAACGTGGCAGATTTGTTTCCATATATTGCCAGTCCTGAAAACGATAGTACAACACGACCTACATGAGACACGTAGGAGGAAAGAAACACTTGGATGAGGCAAATGCCTTCAGCTTAGCCCCTTGAGATCGAGAGGATCCTCGACACTCAAGTGGCCAAGCGAACTTGTCGGAAGGAATACCTACAATATCTTCTCAAGTGGAAGAACCCTCCCATTGAGGATAATTCCTGACTTGACGTCGGACAAATACAGCAGGCAAGTTATTCAGTCGAGGAGCTCGTGCACCGGAGCCATGAATTTTTTTTCTTACCCCAGGAGCTTGATGCAGGAGCATCCAAATGAGGGTATCATGGTTGGGGTGTTTGGTCTCAGCTAGGAAGAATAGTTTCACACTCATCGTTTAGTTTCATTTCCATTTTTTGGTTAAAGTAGTGTTTAAGGGCTTGCATTTTGTTTTTATTATTTTAAATGGTAATTAGGAACATCATGGTTAAAGGAGGGTTGTTACAACCACCTTCTTCTTTTGGTTTTTTTCAATTAACAGTTGTCTTCGACAAAAAAATTAATTTTCCAACAGAGCAAGAAAACAAAGAAACGGTTTTCACAACTATGTAACTACCAATGTAACTGTGAGTAGTTGTGAGAAATTGTCTTGAAAATGGTACAAAAACAAGCATATTATATTTTGTAGAGGTTAGATTACGAGAGACAGAATAGAAGCAAGAAAAAAAATAAGAATTTCATTTCTGTGCAAACCATCCATATCCATTTACAGTTTTATTTTAATATCTTTCCATTTAACTACTGTGTATTGAGCAAGACAGAGAAGCGAAATTCATTTACAGCTAACCATTAATCTTTCATTAAATCACTGTGTATATCGACCGAGACAGAGCAACGAATTCACTGGCAGCTAATTGTTAAACCCTTCCATACAACTACTGTGTGCATTTGACAAAGAACAGAGTGATGTAATTTTTTTTCTTTCTCTTTCCCAAAACAACTAGTTCTACCAACTACCTAGTAACATAGAGTTTCAAGGACGGAAATAGCAACATCTGAAGACATTCGAACATCAAAGAGTGAAATTATAGTTCCAGCCAACAATCAATCCCAAGCCCACAGAGCATAGACAAATGACACGGAGAAGCCACTACAGAATCAACAACAACTGCTTAAAAACGACTGCATTGCACACCCAGGTAACTCATAGTAGTATATACAGAATTCTTTCTTTTTCAAATTACAATCTTGTGCGAAAATAAGATACAAAAATACCAGAACAGAAACTGCCCAAATGAGAAGAGTGTCATGAAAGACAATCCACATAGACCTAGGGTTTGAAAACCCAGAAATATCCAAAGACTGTCGAGAACATAAATAATATACCAAAAAAAGGCATAGCCAAGGGCGGCCAACAGCAACCTAAGAACCGAGGCTCTTAGAACAACATAACTACCAAAAACCCAGATGTTGGAACCACAAACAAAATAAAAAAATGACATATATAAATCAGTGGCGAGGAGCGACCCTACTGGGTTCATCCAAACAACGACAGTCGTGGAAGTGGTCGTTCCAAACCACCGCCCACTAGAAGAGTGGACAGTGTCGGCGCAAAGAACCCCAACCAGGTCGCAGCCACGGGAGGAAACCCCTTGCTAAGCAGAGCCGAGGAGTCGGTCCCTTGTGACCGCAACCTGTAAGGAAACAACGCAGAGGAAGAACCAGTTAACTAGTAGCATGAGTAAGCGCGTAGACAAGAAAATATACAGTGAAGGCACACATAGAACCATAGAGTTTCAGGATAGAGAAAACCCTCCATCGAAACCAAGAGAGCCATCAACACAGTGCCCAGGTGAGACCAACCGAACAGCATAGCAGGGAAGGCAAGTGGAGCTGCCAAGTCACCGACAAAAGAACCCACATCCGGTTGTGGACTGAACACCATCGTAAATCCACAACACAGTCGTAGACAAACTGTCAACAAACCCTCACGGCGAGCAGAGCAAGTCCAAGAGCCAAAGTGACAAGTGAGTGCAAGTGGAGGAGTATAGTTGAGGCGCGGGAGGGTGAAAACCGAGGGCAAGTATAGGTGTCTCCTCACACCTACCTCCGTACCTAGAAATTAACCAAGCTATCAAGCCAAACCTAAAATATCTGTATTAATCATCAGATTAGTGATAAACATAATTGCAATTGATTTTATTCGTTCATTAATAATCTGAAGAGTGGATACCACCAGATCTGAATTAATGAAGGAGACGAATGGAAGGCAGCCTTTAAGACCAATGAAGCTTTGTATGAGTGGCTAGTGATGCCATTCGGGTTAAGCAATGCCCCTAGTACTTTTATGCGCTTAATGAATGAGATGTTAAAGGAATTCATTGGAAAGTTCGTGATTGTATATCTTGATGATATATTGATTTTTAGTAAGACCATAGGAGAACATTTTCGACATGTGCTAGAGAAGTTTCAGCAAAACAAGTTGCCAATAAATCTGACAAAAAAAAATGTTCTTTTCTTCAGAGGGAATTAGTATATTTGGGTTTTGTGATTGCAAAAAATGAGCTAAATATTGACCCAGAGAAGATTACAGCAATCATTAGCTGGCCATCCCCAAAAAGTTTGTTTGAGGTACGCAGTTTTTATGGGTTGGCAAGTGAGATCTACGCACCTATGTTGGATACTAT

Ace file of the UniGene sp_v3.0_unigene1431 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	gag-pol polyprotein [Zea mays]	-	-	0.0	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	34%
Sma3	Putative gag-pol polyprotein	-	-	2.535e-09	-

Source	Gene names
Sma3	At2g06890; LOC_Os03g35326; LOC_Os10g16560; LOC_Os10g20440; LOC_Os11g21960; OJ1122_B08.16; OSJNBa0003M24.1; OSJNBa0022B03.13; OSJNBa0034E23.18; OSJNBa0038J12.13; OSJNBa0045C13.1; OSJNBa0053F13.6; OSJNBa0095C12.16; OSJNBb0052C09.15; Os05g0263200; Os09g04919

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	cysteine-type peptidase activity	GO:0008234	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	-
Sma3	Transposase, MuDR, plant	IPR004332	-	-
Sma3	Auxin efflux carrier	IPR004776	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3		IPR013084	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-
Sma3	MULE transposase domain	IPR018289	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABB2

Fln msg:

Fln protein: MRENIIKEKHNGGLAEHFGIDKTSDQLSHFYYWPRMRRDVQRFVTRCKVCQLTKGHS*NTRLYTPLPIPSKPWDLVSLDFVRSGVTIL*

Protein Length: 90

Fln nts: AAAAAACTGAAATACAAAAAGATTGGCCCGTGTAAAATTCTGCGTAAATTTTCAGCCAATGTTTATGAATTACAACTACCTCCACGGATAGGCATATCGACCATCTTCAACGTGGCAGATTTGTTTCCATATATTGCCAGTCCTGAAGACGATAGTACAACACGACCTACATGAGACACGTAGGAGGAAAGAAACACTTGGATGAGGCAAATGCCTTCAGCTTAGCCCCTTGAGATCGAGAGGATCCTCGACACTCAAGTGGCCAAGCGAACTTGTCGGAAGGAATACCTACAATATCTTCTCAAGTGGAAGAACCCTCCCATTGAGGATAATTCCTGACTTGACGTCGGACGAATACAGCAGGCAAGTTATTCAGTCGAGGAGCTCGTGCACTGGAGCCATGAATTTTTTTTCTTACCCCAGGAGCTTGATGCAGGAGCATCCAAATGAGGGTATCATGGTTGGGGTGTTTGGTCTCAGCTAGGAAGAATAGTTTCACACTCATCGTTTAGTTTCATTTCCATTTTTTGGTTAAAGTAGTGTTTAAGGGCTTGCATTTTGTTTTTATTATTTTAAATGGTAATTAGGAACATCATGGTTAAAGGAGGGTTGTTACAACCACCTTCTTCTTTTGGTTTTTTTCAATTAACAGTTGTCTTCGACAAAAAAATTAATTTTCCAACAGAGCAAGAAAACAAAGAAACGGTTTTCACAACTATGTAACTACCAATGTAACTGTGAGTAGTTGTGAGAAATTGTCTCGAAAATGGTACAAAAACAAGCATATTATATTTTGTAGAGGTTAGATTACGAGAGACAGAATAGAAGCAAGAAAAAAAATAAGAATTTCATTTCTGTGCAAACCATCCGTATCCATTTACAGTTTTATTTTAATCTCTTTCCATTTAACTACTGTGTATTGAGCAAGTCAGAGAAGTGAAATTCATTTACAGCTAACCATTAATCTTTCATTAAATCACTGTGTATATCGACCGAGACAGAGCAACGAATTCACTGGCAGCTAATTGTTAAACCCTTCCATACAACTACTGTGTGCATTTGACAAAGAACAGAGTGATGTAATTTTTTTCTTTCTCTTTCCCAAAACAACTAGTTCTACCAACTACCTAGTAACATAGAGTTTCAAGGACAGAAATAGCAACATCTGAAGACATTCGAACATCAAAGAGTGAAATTATAGTTCCAGCCAACAATCAATCCCAAGCCCACAGAGCATAGACAAATGACACGGAGAAGCCACTACAAAATCAACAACAACTGCTTAAAAACGACTGCATTGCACACCCAGGTAACTCATAGTAGTATATACAGAATTCTTTCTTTTTCAAATTACAGCCTTGTGCGAAAATAAGATACAAAAATACCATAACAAAAATTACCCAGACGGGAAGAGTCTCATGAAAGACAATCCAAATAGACCCAGGGTTTGAAAACCTAGAAATATCCAAAGACTGCCGAGAACATAAATAATATACCAAAAAAAGGCATAGCCAAGGGCGGCCAATGACAACCTAAGAGCCAAGCCTCTCAGAACAACATAACTACTAGAAACCCAGATGTTGGAACCACAAACAGAATAAAAAAATGACATATATAAATCAGTGACGAGGAGCGACCCTACCGGGTTCATCCAAACAACGACAGTTGTGGAAGCGGTCGTCCCAAACCACCGCCCACTAGAAGAGTAGACAGTGTCGGCGCAAAGAACCCCAACCAGGTCGCAGCCACGGGAGGAAACCCCTTGCTAAGCAAAGCCGAGGACTCGGGCCCTTGTGACCGCAACCTGTAAGGAAACAACGCATAGGAAGAACCAGTTAACCAGTAGCTCGAGTAAGCAAGTAGACAAGCAAATATATAGTGAAGGCACACAGAGGACCATAGAGTTTCAGGATAGAGAAAACCCTCCAACAAAACCGACTGAGCCATCAACACATTGCCCAGGTGAGACCAACCGAACAGCATAGCAGGGAAGGCAAGTGGAGCTGCCAAGTCACCGACAAAAGAACCCACATCCGGTTGTGGACTGAACACCATTGTAAATCCACAACACAGTCGTAGACAAACTGTCAACAAACCCTCACCGCGAGCAGAGCAAGTCCAGGAGCCAAAGTGACAAGTGAGTGCGAAGTGGAGGAGTATAGTTGAGGCGCGGGAGGGTGAAAACCGAGGGCAAGGATAGGTGTCTCCTCACACCTACCTCCGTACCTAGAAATTAACCAAGCTATCAAGCCAAACCTAAAATATCTGTATTAATCATCAGATTAGTGATAAACATAATTGCAATTGATTTTATTCGTTCATTAATAATCTGAAGAGTGGATACCACCAGATCTGAATTAATGAAGGAGACGAATGGAAGGCAGCCTTTAAGACCAATGAAGCTTTGTATGAGTGGCTAGTGATGCCATTCGGGTTAAGCAATGCCCCTAGTACTTTTATGCGCTTAATGAATGAGATGTTAAAGGAATTCATTGGAAAGTTCGTGATTGTATATCTTGATGATATATTGATTTTTAGTAAGACCATAGGAGAACATTTTCGACATGTGCTAGAGAAGTTTCAGCAAAACAAGTTGCCAATAAATCTGACAAAAAAAAATGTTCTTTTCTTCAGAGGGAATTAGTATATTTGGGTTTTGTGATTGCAAAAAATGAGCTAAATATTGACCCAGAGAAGATTACAGCAATCATTAGCTGGCCATCCCCAAAAAGTTTGTTTGAGGTACGCAGTTTTTATGGGTTGGCAAGTGAGATCTACGCACCTATGTTGGATACTATAAAAAAGGCAAGTCAGCCTTTCTGTTGGACTAAAGTAGCAGAGAAAAGTTTTCAACTACTAAAGAAGAAGATTATTGAAAGACCAATCCTGAGATTGCCAGATTTTAACAAGATTTTTCAGGTTCGTTGTGATGCCAGTGTATAGCCATTGGGGCCATACTCAGCTAGGAAGACAAACCCGTTTCCTATTTCAGCGAAAAACTGAACGAAAGCAGGCAGAAGTACTCATCTTACGACAAGGAGTTCTATGTTGTCGTCCAAGCATTGAAGCATTGGAGGCACTATTTTCTAGGGAATGAATTTGTTTTGTTTTCCGATAATTTTGCATTGCAGTACGTTATGCAACAGCATAAGCTGAACCACAAGCATGCAAAATGGGTTGAGTACTTGCAGAGTTTCACGTTTGTCTTGAAGCATATCAGTGGACAGGCCAACAAGGTTGTAGATGCATTGAGCAGAAGAGATTTTCTCTTACAAGAAAGTACGATACAAGTATTGGGTTTTGAGCACCTGACAGACTTGTATTAGACAAATGCAGATTTCAAGGAGGCTTATGAAGCCTACCAAAATCCTTTGTTGAGTAACAATAGTCCGTGGCTGGACTATAAATTACAAGAGAAGTTGTTGTTTAAAGGGGGACAATTATGCATTCCTGACTGTTTT_-_ATGAGGGAGAACATCATCAAGGAGAAGCACAACGGAGGTCTAGCCGAACATTTCGGCATTGATAAGACCTCAGACCAGCTTAGCCATTTTTATTACTGGCCAAGGATGCGAAGGGATGTGCAGCGATTTGTAACTAGATGTAAAGTGTGTCAGTTGACGAAAGGACACAGTTAGAATACGAGACTATACACACCACTGCCTATTCCGAGTAAACCGTGGGACTTAGTCAGCTTGGACTTTGTCCGCAGCGGAGTTACGATTCTGTGA___TGGTGGTAGTGGACGGTTCTCAAAAATGGCACATTTCATCCCTTGTAAAAAAATCAGCGATGCCACTCACATGGCCCACTTGTTTTTCACGGAGATAGTCAGGCTACACGGTCTGCTTAAGTCTATAGTTTCCGACAAGGACGTGAAATTTACAGGACACTTTTGGCGCACCTTGTGGAAGAAGATGGACACACAGTTAAGTGTTGTCTCCGCTTATCACCCACAGACCAACGGACAAACAGAGGTGGTAAACAGGAGCCTGGGAAACCTGATACGAAGCTTGATCAGAGAAAATTCACGAATGTGGGATCGTGTACTTGCCCAGGCGGAGTTTGCTTACAACGACTCACCAAATCACAGCACGGGATACAGTCCTTTTTAGATCTTATATGGCATGCATCCTCACGGAGTGCATGAGTTATGAGATCAAGGACAGCAAGAAAAACGTAGTGCTGATGGGGAAGATTCTGCCAAAGCAATGAATGACCTACACGAGCAGGTAAAGACGAAGTTGCAGGACAGCAGTCAGAAGTATAAGCAGCGAGCAGATATGAAGCAGTGAGAAGTACAATTTAATGTGGGGGATGAAGTCCTCGCACATTTATGCAGAGAACGGTTTGCTAGGGGTGAATACAAAAAACTGAAATACAAAAAGATTGGCCCGTGTAAAATTCTGCGTAAATTTTCAGCCAATGTTTATGAATTACAACTACCTCCACGGATAGGCATATCGACCATCTTCAACGTGGCAGATTTGTTTCCATATATTGCCAGTCCTGAAAACGATAGTACAACACGACCTACATGAGACACGTAGGAGGAAAGAAACACTTGGATGAGGCAAATGCCTTCAGCTTAGCCCCTTGAGATCGAGAGGATCCTCGACACTCAAGTGGCCAAGCGAACTTGTCGGAAGGAATACCTACAATATCTTCTCAAGTGGAAGAACCCTCCCATTGAGGATAATTCCTGACTTGACGTCGGACAAATACAGCAGGCAAGTTATTCAGTCGAGGAGCTCGTGCACCGGAGCCATGAATTTTTTTTCTTACCCCAGGAGCTTGATGCAGGAGCATCCAAATGAGGGTATCATGGTTGGGGTGTTTGGTCTCAGCTAGGAAGAATAGTTTCACACTCATCGTTTAGTTTCATTTCCATTTTTTGGTTAAAGTAGTGTTTAAGGGCTTGCATTTTGTTTTTATTATTTTAAATGGTAATTAGGAACATCATGGTTAAAGGAGGGTTGTTACAACCACCTTCTTCTTTTGGTTTTTTTCAATTAACAGTTGTCTTCGACAAAAAAATTAATTTTCCAACAGAGCAAGAAAACAAAGAAACGGTTTTCACAACTATGTAACTACCAATGTAACTGTGAGTAGTTGTGAGAAATTGTCTTGAAAATGGTACAAAAACAAGCATATTATATTTTGTAGAGGTTAGATTACGAGAGACAGAATAGAAGCAAGAAAAAAAATAAGAATTTCATTTCTGTGCAAACCATCCATATCCATTTACAGTTTTATTTTAATATCTTTCCATTTAACTACTGTGTATTGAGCAAGACAGAGAAGCGAAATTCATTTACAGCTAACCATTAATCTTTCATTAAATCACTGTGTATATCGACCGAGACAGAGCAACGAATTCACTGGCAGCTAATTGTTAAACCCTTCCATACAACTACTGTGTGCATTTGACAAAGAACAGAGTGATGTAATTTTTTTTCTTTCTCTTTCCCAAAACAACTAGTTCTACCAACTACCTAGTAACATAGAGTTTCAAGGACGGAAATAGCAACATCTGAAGACATTCGAACATCAAAGAGTGAAATTATAGTTCCAGCCAACAATCAATCCCAAGCCCACAGAGCATAGACAAATGACACGGAGAAGCCACTACAGAATCAACAACAACTGCTTAAAAACGACTGCATTGCACACCCAGGTAACTCATAGTAGTATATACAGAATTCTTTCTTTTTCAAATTACAATCTTGTGCGAAAATAAGATACAAAAATACCAGAACAGAAACTGCCCAAATGAGAAGAGTGTCATGAAAGACAATCCACATAGACCTAGGGTTTGAAAACCCAGAAATATCCAAAGACTGTCGAGAACATAAATAATATACCAAAAAAAGGCATAGCCAAGGGCGGCCAACAGCAACCTAAGAACCGAGGCTCTTAGAACAACATAACTACCAAAAACCCAGATGTTGGAACCACAAACAAAATAAAAAAATGACATATATAAATCAGTGGCGAGGAGCGACCCTACTGGGTTCATCCAAACAACGACAGTCGTGGAAGTGGTCGTTCCAAACCACCGCCCACTAGAAGAGTGGACAGTGTCGGCGCAAAGAACCCCAACCAGGTCGCAGCCACGGGAGGAAACCCCTTGCTAAGCAGAGCCGAGGAGTCGGTCCCTTGTGACCGCAACCTGTAAGGAAACAACGCAGAGGAAGAACCAGTTAACTAGTAGCATGAGTAAGCGCGTAGACAAGAAAATATACAGTGAAGGCACACATAGAACCATAGAGTTTCAGGATAGAGAAAACCCTCCATCGAAACCAAGAGAGCCATCAACACAGTGCCCAGGTGAGACCAACCGAACAGCATAGCAGGGAAGGCAAGTGGAGCTGCCAAGTCACCGACAAAAGAACCCACATCCGGTTGTGGACTGAACACCATCGTAAATCCACAACACAGTCGTAGACAAACTGTCAACAAACCCTCACGGCGAGCAGAGCAAGTCCAAGAGCCAAAGTGACAAGTGAGTGCAAGTGGAGGAGTATAGTTGAGGCGCGGGAGGGTGAAAACCGAGGGCAAGTATAGGTGTCTCCTCACACCTACCTCCGTACCTAGAAATTAACCAAGCTATCAAGCCAAACCTAAAATATCTGTATTAATCATCAGATTAGTGATAAACATAATTGCAATTGATTTTATTCGTTCATTAATAATCTGAAGAGTGGATACCACCAGATCTGAATTAATGAAGGAGACGAATGGAAGGCAGCCTTTAAGACCAATGAAGCTTTGTATGAGTGGCTAGTGATGCCATTCGGGTTAAGCAATGCCCCTAGTACTTTTATGCGCTTAATGAATGAGATGTTAAAGGAATTCATTGGAAAGTTCGTGATTGTATATCTTGATGATATATTGATTTTTAGTAAGACCATAGGAGAACATTTTCGACATGTGCTAGAGAAGTTTCAGCAAAACAAGTTGCCAATAAATCTGACAAAAAAAAATGTTCTTTTCTTCAGAGGGAATTAGTATATTTGGGTTTTGTGATTGCAAAAAATGAGCTAAATATTGACCCAGAGAAGATTACAGCAATCATTAGCTGGCCATCCCCAAAAAGTTTGTTTGAGGTACGCAGTTTTTATGGGTTGGCAAGTGAGATCTACGCACCTATGTTGGATACTAT

Fln Alignment:

Contig1431___LSHFYYWPRMRRDVQRFVTRCKVCQLTKGHS*NTRLYTPLPIPSKPWDLVSLDFV
D5ABB2______________LQKYFYWSKLRHDVSKYIRSCSACSIAKPAIKKQGLYTPLPTLDRPWESISMDYM

SNPs (tot: 69)

Position	A %	C %	G %	T %	Probability
694		25		75	0.996473
695		25	75		0.996473
719		50		50	1.0
721	25		75		0.996473
725		75		25	0.996473
859		66	33		0.997452
885	33		66		0.997452
1237		25	75		0.996473
1240	25			75	0.996473
1262		25		75	0.996473
1273		75		25	0.996473
1274		25		75	0.996473
1321		66		33	0.997452
1325	66		33		0.997452
1344	33		66		0.997452
1367			66	33	0.997452
1385		66	33		0.997452
1395	66		33		0.997452
1397		33		66	0.997452
1408		66		33	0.997452
1444	66		33		0.997452
1445		33		66	0.997452
3445	85	14			0.993533
3492		28		71	1.0
3508	14		85		0.993533
3524	10		90		0.90298
3526		90	10		0.90298
3527			10	90	0.90298
3528		90	10		0.90298
3834		10		90	0.90298
3885		90	10		0.90298
3930	80			20	0.999996
3999	10			90	0.90298
4000	10		90		0.90298
4002	80		20		0.999996
4003			10	90	0.90298
4023		80		20	0.999996
4040	20		80		0.999996
4048	80		20		0.999996
4055	14	85			0.993533
4056	28	14	57		1.0
4062		66		33	1.0
4069	85		14		0.993533
4070	85		14		0.993533
4071			14	85	0.993533
4083	77			22	0.999999
4085	77		22		0.999999
4118	12	87			0.992554
4142	87	12			0.992554
4158	12		87		0.992554
4205	85		14		0.993533
4207		85		14	0.993533
4220	14	85			0.993533
4235	14		85		0.993533
4246	28		71		1.0
4342		16		83	0.994512
4360		20		80	0.995493
4380	80		20		0.995493
5461		33		66	0.997452
5570	66			33	0.997452
5836	14			85	0.993533
5837		85		14	0.993533
5888		80		20	0.995493
5903		20		80	0.995493
5912		80		20	0.995493
5924	80		20		0.995493
5986	60	20	20		0.99255
6009			80	20	0.995493
6017		20		80	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain