SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1422

Length: 2739 nt

UniGene Fasta

>sp_v3.0_unigene1422
TAGTATGGGCAACATCCCGACCTTGGCTGTTTTTAATGTATTCTCAGAGCTTTCATATCTTTACTGAAAGTCCTTCGCTCCCATAGAGAATCGCATATCTAACTCAGTTACCCACGCGTTTCCTTGCTTCGGAGAGGCCTCGATATCGAGCCCCGCAGCAGCAGTAGAAGGGTTTACAAAAAAAGATGGAGACGATGGAGATGCCAGTGCCTGCACATCGCCTGGGCACCGATACCCAGCAGCTCAACATCGATTTTTCCAATGTTGACTTGGATTCAATACAGCTTCCTCCCGGCGAAGATTTTGGCATCAAAAGTGAGGATGAAGAGGAAGAAGAAGATTCACTAGAGTTCGAGACTGGGTTCGGTAACATTGTAGTTGTAGACAATCTCCCGGTAGTCCCTCCAGAGAAGTTTGAGAAACTCGAAGGTGTTGTTCGCAAGATATTTGGGCAGATTGGTACAATCAGGGAGAGGGGGCTCTGGATGCCACTCCACCCCGAGACCCAGAAGACTAAAGGATATTGTTTTATAGAGTACAACACCCCTCAGGAAGCACAGACAGCAAAAGATCAAACAAATGGATATAAGCTGGATAAATCCCATATATTTGCTGTTAACATGTTTGATGACTTTGATAAATATATGAAAGTATCAAATGAGTGGATTCCTCCAGAAACAAAGGCCTATACACCTGTGGAAAATTTACAACAATGGCTAACAGACGACAAAGGACGTGATCAATTTGTTGTTCGTGCTAACACTGACACTGAAGTTTATTGGAATGATCCTAGACAACTCAGACCAGAACTAGTCTACCGACGTGGATACTGGACTGAAAGCTTTGTCCAGTGGTCATCTCTCGGAACTTACCTCGCAACGGTGCACAGGCAGGGAGCAGCTATTTGGGGAGGTGCTACAACCTTTAACCGTCTGATGCGATTTGCACATCCACAGGTAAAATTGATAGATTTCTCTCCTGGTGAAAAATTCTTGGTTACTTACAGCAGTCACGAGCCAAGTAATCCTCGAGACACACAGAGGGTTACCCTCAACATTTTTGACGTGAGGACTGGTAAAGTATTGAGAGAGTTTAAAGGAAGTGCTGATGATTTTGCAACTGGTGGAACTGGTGGTGTTGCTGGTGTGTCTTGGCCTGTATTCAGATGGGCTGGTGGCAGAGATGACAAATACTTTGCCCGTATTGGAAAAAATGCTATCAGTGTTTATGAAACTGAAACTATGACTCTCCTAGATAAGAAGTCCATCAAAGTTGAAAATGTAATGGATTTCAGTTGGTCTCCAACAGATCCAATACTAGCCTTGTTTGTGCCAGAGGGAGGTGGGGGTAACCAACCTGCAAAAGTGAGTCTTGTACAAATCCCTGGAAGGGAAGAACTGAGACAAAAAAATCTCTTCAGTGTAAGTGATTGCAAAATGTACTGGCAAAGCAATGGAGACTACTTGGCAGTCAAAGTGGATCGCTATACCAAGACAAAAAAAAGTACATACACAGGTTTTGAACTTTTCCGGATTAAGGAAAGAGATATTCCCATAGAGGTCCTGGAATTAGAGAACAAAAATGACAAGATCATTGCATTTGCTTGGGAGCCCAAAGGCCACAGGTTTGCTATTATCCATGGGGATGGACCCAGGCCAGATGTTAGTTTCTATTCAATGAGGAGCCCTAATCATGTGGGCCGGGTTTTCAAGCTGGCTACCATCAAAGGAAAACAAGCAAACTCCCTTTACTGGTCCCCCATTGGACGGTTTATTATTCTTGCAGGTCTAAAAGCTTTAAATGGTCAGCTTGAATTTTACAATGTCGATGAATTGGAGACAATGGCAACTGGTGAACACTTCATGGCAACTGATATTGAGTGGGATCCTACTGGAAGATATGCTGCAACAGCAGTTACATCTGTGCATGAAATGGAAAATGGGTTTAACATATGGTCTTTCAATGGAAAGCTATTGTACCACGTTTCAAGAGATCATTTCTACCAGCTATTATGGCGACCGAGGCCACCCTCTCTTCTAAGCCCAGAGAAAGAGGAGGAGATCGCTAAGAATTTGAGGAAGTATAGTAAGAAGTATGAGGCTGAAGACCAGGATGTTTCGTTATTGTTGAGTGAGCAAGACAGGGAGAAACGGAAGAAATTACAAGAGGATTGGCAGGTCTGGGTCAATGAATGGAAACGTTTTCACGAGGAAGAGAAATTATTTAGACAGGAGCTACGTGATGGAGAGCCTAGTGATGAAGAAGAGGAATATGAAGCAGAAGAAGTTGAAGTTGAAGAGATCGTAGACGTTACTGAAGAGATTGCTTCATTTGGTTTTGAGCAGTTGGACTGATTGATTATATAGTATGCAGCTGCTTGTGCCTCCATACAGCCCTATGTTTGTGCCATTATGCAGACAGATAGCTTAGCTAGAAGATTCAGTGGTTTTTAATTGTTTTCCTGACCAGATTCATAATAGATGAGATACTCTTTTGTTGAAATTTTGTAGAATGGGCATTGAAATAGTCACTTTCTCAAAGGAAAAATTGCAGTGTGAAAGGTTGATCTATTATTCATTGAATGATCTAATGTTTCTAGGGTACTTTCTTGCATAGCCGGATTTTTTATGGAATAGATTGTCACTGTGACAAATTTCCAAAGTAAAAATGCAGTAAGGAAAGATGCTTTATGTAAATGTACTGGAATTATATTTTAGTTACTCTTTCAGGAATTTTAAT

Ace file of the UniGene sp_v3.0_unigene1422

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	translation initiation factor 3 subunit B [Arabidopsis thaliana] sp\|Q9C5Z1.1\|EIF3B_ARATH RecName: Full=Eukaryotic translation initiation factor 3 subunit B; Short=eIF3b; AltName: Full=eIF-3-eta; AltName: Full=eIF3 p110; AltName: Full=p82 gb\|AAG53615.1\|AF2	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	translation initiation factor activity	GO:0003743	Molecular Function	-
Sma3	translational initiation	GO:0006413	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Translation initiation factor 2A, beta propellor-like domain	IPR013979	-	-
Sma3	Translation initiation factor eIF-3b	IPR011400	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G25780.1	EIF3B-2, EIF3B, ATEIF3B-2 eukaryotic translation initiation factor 3B-2 chr5:8973420-8976758 REVERSE LENGTH=714	73%
RefSeq	Arabidopsis thaliana	NP_568498.1	translation initiation factor 3 subunit B [Arabidopsis thaliana]	73%
RefSeq	Populus trichocarpa	XP_002308719.1	predicted protein [Populus trichocarpa]	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWV8

Fln msg:

Fln protein: METMEMPVPAHRLGTDTQQLNIDFSNVDLDSIQLPPGEDFGIKSEDEEEEEDSLEFETGFGNIVVVDNLPVVPPEKFEKLEGVVRKIFGQIGTIRERGLWMPLHPETQKTKGYCFIEYNTPQEAQTAKDQTNGYKLDKSHIFAVNMFDDFDKYMKVSNEWIPPETKAYTPVENLQQWLTDDKGRDQFVVRANTDTEVYWNDPRQLRPELVYRRGYWTESFVQWSSLGTYLATVHRQGAAIWGGATTFNRLMRFAHPQVKLIDFSPGEKFLVTYSSHEPSNPRDTQRVTLNIFDVRTGKVLREFKGSADDFATGGTGGVAGVSWPVFRWAGGRDDKYFARIGKNAISVYETETMTLLDKKSIKVENVMDFSWSPTDPILALFVPEGGGGNQPAKVSLVQIPGREELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAIIHGDGPRPDVSFYSMRSPNHVGRVFKLATIKGKQANSLYWSPIGRFIILAGLKALNGQLEFYNVDELETMATGEHFMATDIEWDPTGRYAATAVTSVHEMENGFNIWSFNGKLLYHVSRDHFYQLLWRPRPPSLLSPEKEEEIAKNLRKYSKKYEAEDQDVSLLLSEQDREKRKKLQEDWQVWVNEWKRFHEEEKLFRQELRDGEPSDEEEEYEAEEVEVEEIVDVTEEIASFGFEQLD*

Protein Length: 724

Fln nts: TAGTATGGGCAACATCCCGACCTTGGCTGTTTTTAATGTATTCTCAGAGCTTTCATATCTTTACTGAAAGTCCTTCGCTCCCATAGAGAATCGCATATCTAACTCAGTTACCCACGCGTTTCCTTGCTTCGGAGAGGCCTCGATATCGAGCCCCGCAGCAGCAGTAGAAGGGTTTACAAAAAAAG_-_ATGGAGACGATGGAGATGCCAGTGCCTGCACATCGCCTGGGCACCGATACCCAGCAGCTCAACATCGATTTTTCCAATGTTGACTTGGATTCAATACAGCTTCCTCCCGGCGAAGATTTTGGCATCAAAAGTGAGGATGAAGAGGAAGAAGAAGATTCACTAGAGTTCGAGACTGGGTTCGGTAACATTGTAGTTGTAGACAATCTCCCGGTAGTCCCTCCAGAGAAGTTTGAGAAACTCGAAGGTGTTGTTCGCAAGATATTTGGGCAGATTGGTACAATCAGGGAGAGGGGGCTCTGGATGCCACTCCACCCCGAGACCCAGAAGACTAAAGGATATTGTTTTATAGAGTACAACACCCCTCAGGAAGCACAGACAGCAAAAGATCAAACAAATGGATATAAGCTGGATAAATCCCATATATTTGCTGTTAACATGTTTGATGACTTTGATAAATATATGAAAGTATCAAATGAGTGGATTCCTCCAGAAACAAAGGCCTATACACCTGTGGAAAATTTACAACAATGGCTAACAGACGACAAAGGACGTGATCAATTTGTTGTTCGTGCTAACACTGACACTGAAGTTTATTGGAATGATCCTAGACAACTCAGACCAGAACTAGTCTACCGACGTGGATACTGGACTGAAAGCTTTGTCCAGTGGTCATCTCTCGGAACTTACCTCGCAACGGTGCACAGGCAGGGAGCAGCTATTTGGGGAGGTGCTACAACCTTTAACCGTCTGATGCGATTTGCACATCCACAGGTAAAATTGATAGATTTCTCTCCTGGTGAAAAATTCTTGGTTACTTACAGCAGTCACGAGCCAAGTAATCCTCGAGACACACAGAGGGTTACCCTCAACATTTTTGACGTGAGGACTGGTAAAGTATTGAGAGAGTTTAAAGGAAGTGCTGATGATTTTGCAACTGGTGGAACTGGTGGTGTTGCTGGTGTGTCTTGGCCTGTATTCAGATGGGCTGGTGGCAGAGATGACAAATACTTTGCCCGTATTGGAAAAAATGCTATCAGTGTTTATGAAACTGAAACTATGACTCTCCTAGATAAGAAGTCCATCAAAGTTGAAAATGTAATGGATTTCAGTTGGTCTCCAACAGATCCAATACTAGCCTTGTTTGTGCCAGAGGGAGGTGGGGGTAACCAACCTGCAAAAGTGAGTCTTGTACAAATCCCTGGAAGGGAAGAACTGAGACAAAAAAATCTCTTCAGTGTAAGTGATTGCAAAATGTACTGGCAAAGCAATGGAGACTACTTGGCAGTCAAAGTGGATCGCTATACCAAGACAAAAAAAAGTACATACACAGGTTTTGAACTTTTCCGGATTAAGGAAAGAGATATTCCCATAGAGGTCCTGGAATTAGAGAACAAAAATGACAAGATCATTGCATTTGCTTGGGAGCCCAAAGGCCACAGGTTTGCTATTATCCATGGGGATGGACCCAGGCCAGATGTTAGTTTCTATTCAATGAGGAGCCCTAATCATGTGGGCCGGGTTTTCAAGCTGGCTACCATCAAAGGAAAACAAGCAAACTCCCTTTACTGGTCCCCCATTGGACGGTTTATTATTCTTGCAGGTCTAAAAGCTTTAAATGGTCAGCTTGAATTTTACAATGTCGATGAATTGGAGACAATGGCAACTGGTGAACACTTCATGGCAACTGATATTGAGTGGGATCCTACTGGAAGATATGCTGCAACAGCAGTTACATCTGTGCATGAAATGGAAAATGGGTTTAACATATGGTCTTTCAATGGAAAGCTATTGTACCACGTTTCAAGAGATCATTTCTACCAGCTATTATGGCGACCGAGGCCACCCTCTCTTCTAAGCCCAGAGAAAGAGGAGGAGATCGCTAAGAATTTGAGGAAGTATAGTAAGAAGTATGAGGCTGAAGACCAGGATGTTTCGTTATTGTTGAGTGAGCAAGACAGGGAGAAACGGAAGAAATTACAAGAGGATTGGCAGGTCTGGGTCAATGAATGGAAACGTTTTCACGAGGAAGAGAAATTATTTAGACAGGAGCTACGTGATGGAGAGCCTAGTGATGAAGAAGAGGAATATGAAGCAGAAGAAGTTGAAGTTGAAGAGATCGTAGACGTTACTGAAGAGATTGCTTCATTTGGTTTTGAGCAGTTGGACTGA___TTGATTATATAGTATGCAGCTGCTTGTGCCTCCATACAGCCCTATGTTTGTGCCATTATGCAGACAGATAGCTTAGCTAGAAGATTCAGTGGTTTTTAATTGTTTTCCTGACCAGATTCATAATAGATGAGATACTCTTTTGTTGAAATTTTGTAGAATGGGCATTGAAATAGTCACTTTCTCAAAGGAAAAATTGCAGTGTGAAAGGTTGATCTATTATTCATTGAATGATCTAATGTTTCTAGGGTACTTTCTTGCATAGCCGGATTTTTTATGGAATAGATTGTCACTGTGACAAATTTCCAAAGTAAAAATGCAGTAAGGAAAGATGCTTTATGTAAATGTACTGGAATTATATTTTAGTTACTCTTTCAGGAATTTTAAT

Fln Alignment:

Contig1422___METMEMP--VPAHRLGTDTQQLNIDFSNVDLDSIQLPPGEDFGIKXXXXXXXXXXXXXXTGFGNIVVVDNLPVVPPEKFEKLEGVVRKIFGQIGTIRERGLWMPLHPETQKTKGYCFIEYNTPQEAQTAKDQTNGYKLDKSHIFAVNMFDDFDKYMKVSNEWIPPETKAYTPVENLQQWLTDDKGRDQFVVRANTDTEVYWNDPRQLRPELVYRRGYWTESFVQWSSLGTYLATVHRQGAAIWGGATTFNRLMRFAHPQVKLIDFSPGEKFLVTYSSHEPSNPRDTQRVTLNIFDVRTGKVLREFKGSADDFXXXXXXXXXXXSWPVFRWAGGRDDKYFARIGKNAISVYETETMTLLDKKSIKVENVMDFSWSPTDPILALFVPEGGGGNQPAKVSLVQIPGREELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAIIHGDGPRPDVSFYSMRSPNHVGRVFKLATIKGKQANSLYWSPIGRFIILAGLKALNGQLEFYNVDELETMATGEHFMATDIEWDPTGRYAATAVTSVHEMENGFNIWSFNGKLLYHVSRDHFYQXXXXXXXXXXXXXXXXXXIAKNLRKYSKKYEAEDQDVSLLLSEQDREKRKKLQEDWQVWVNEWKRFHEEEKLFRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIASFGFEQLD
A9NWV8______________METIEMPLPVPVHRLGNDIQQLNIDFSNVDLDSIQLPPGEDFGIKSEDEEEEEDSLEFETGFGNIVVVDNLPVVPPEKFEKLEGVVRKIFGQIGTIRERGLWMPIHPETQKTQGYCFIEYNTPQEAQTAKDQTNGYKLDKSHVFAVNMFDDFDKYMKVPNEWIPPETKAYTPGENLQQWLTDEKGRDQYVIRSNTDTEVYWNDPRQLKPELVYRRGYWTESFVQWSSLGTYLATVHRQGAAIWGGGTTFNRLMRFAHPQVKLIDFSPGENFLVTYSSHEPSNPRDTQRVTLNIFEVRTGKVLREFKGSADDFATGGTGGVAGVSWPVFRWAGGRDDKYFARIGKNAISVYETDTMTLLDKKSLKVDNVMDFSWSPTDPILALFVPEGGGGNQPAKVSLVQIPGREELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAIIHGDGPRPDVSFYSMRSPNNVGRVSKLATIKGKQANSLYWSPIGRFIILAGLKALNGQLEFFNVDELETMATGEHFMATDIEWDPTGRYAATSVTVVHEMENGFNIWSFNGKLLYRIPRDHFYQLLWRPRPPSLLSPEKEEEISKNLRKYSKKYEAEDQDVSLLLSEQDREKRKRLQEDWQGWVNEWKRLHEEEKLFRQDLRDGEPSDEEEEYEAEEVEVEELIDVTEEIASFGFEQLD

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
152		33		66	1.0
155		33		66	1.0
216	50	50			1.0
2463	14	85			0.993533
2470		14	85		0.993533
2472		16		83	0.994512
2480	50		50		1.0
2483	16			83	0.994512
2493			20	80	0.995493
2528		20	80		0.995493
2529		20		80	0.995493
2532	20	80			0.995493
2542	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain