SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1418

Length: 2910 nt

UniGene Fasta

>sp_v3.0_unigene1418
TGCGTGCTTTTGGAGGCGATTTGTTTTTGTGCGGTTTTAAGGAGGCGAAAATTTGTAGGTCTGCTGTTATCCGAGGCGAGAAAGAGCCTTGGAGGTTTGGCCTTGGTTTGGTTTCGTGAAGGTTGCATACATTTTGACCCGATGTACCGTCTGTTTGCCGTGCTCGATCCGTCTGTTTGCCGTTTTCGATCATAGACGCACCAGATTTGAACATTTCGTCTCGTTTTATCGGAGGATGATACTATTTTGACAAGGACTTGAAGGCTATTGGGAGCGACTTCCTTCCTATATGCTATAAGTATGCACAAAGGTTTTGGTCCTGCCCTGCTTTCTATATGAATTGACTTGCAGTTTAAACGAGACCTAAGCTATTATAAGAAACTAGAGACGAAATAATTCAGAAGGCCCTATAAGCAGGAAGCAATGGCTCCAAGCAAATTGAGAAAAGCTATGGGGACAGTTAAGGATCAGACAAGCATTGGACTAGCAAAAGTGGCAAGCACCAGAGCTCCAGACTTGGATGTTGCAATTGTAAAGGCCACCAGTCATGATGAAGTTCCAACTGATGAAAAATATGTACAGGAAATTTTGCAGCTTACTTCGTATTCAAGGGGCTATGTGAATGCCTGTGTAGCAGGCTTGTCTAAACGCCTTGGCAAAACTCACAACTGGGTAGTGGCACTGAAAGCAGTGGGGCTTATTCATAGGCTGTTGCGGGATGGTGATCCAAGCTTTGAGCATGAAGTGCTTTATGCAACAAGGCGTGGTGCTCGTTTATTAAATTTGTCTGATTTTAGAGATGATTCACATTCCAATGCCTGGGATTACTCTGCCTTTGTACGCACGTATGCTTCATACCTTGACGAGTGCCTTGATTGCTCAGTTGCTGAAAAAAAACAGATTAATGGTAGATTTAACAACAGCAATCGGAGGATGGGATACAATGCCTATGAGTTTGGAAGTGGAGATTATGGGAGCAATGGATACAATAACCACAGATCTGGTTACAGTGATTATGAAGTCCGTGAGCAAGAAGAAACACAGGTTGACAATGGTCAACCTATGGCAATCCGAGATATGAAGACTGAAATGATTTTTGACAAGTTGTACCGTTGGCTGCGGCTTTTGGAACATTTCATTGCCTGCCGCCCTACAGGTCCAGCAAAGAGTAACAGATTGGTTCAAACTGCTCTTTATCCTATTGTAAGGGAGAGCTTTCAGCTTTATGGTCATATCTGTGATGGCTTGGCTGTTATCCTGGATAGATTCTTTGACATGGAGTATCAGGATTCTGCCAAGGCATTTGAGATGTATTTAAGAGCAGCAAAGAAAGTTGGAGAACTGGCATCCTTTTATAACTTGTGCAGAAACATGGGAGTGTGTAGAACCGCAGAATATCCAGAAGTGCAAATGATTTCAGAGCAACTACTTAGGACATTGGAGGAATATTTAAGTGAGAGGTCATCTTCTCGCAATGAAAGGCCTAAGAGTCCTGAACCAGAGCCAGAGAAGTTGCAAAGTCCTGGCCCAATATCAGAAGAACCAGCCGAGGGTTTAAATAACAGAAAAGCGCTTCCAGCTCCTGGACATGATGCAAATAATGAACCTGAGGAAACACAGAAGTTAACAAAACAGCCAGAGGGAGATTTATTAAATGTAAACAATGCGACCATTTCGTCGAAAGAACTAGAGAACAAGTTTGCATTAGCACTCTTTAGTGGTTCTTCACAATCGGATGCTACAAAGGAATGGGAGGCATTTCCACCTTCTGACAAGGGATCAGGGAAGGCCTCTGCATGGGAAACACCATTGACTGAAAAAGGAAAGGCTGGTTGGGAGCTTGCGCTTGTAGAGTCAGTCAGCAATCTTAGAAAACAAGGAGGCTCAATGGCAGGTGGTTTTGATAGCTTGCTCGTGGAGGGCTTGTATGACCAAGCTGTAGCCCATCAGCAGCATATGTCACATCTTATGGCACCTGGAAGTGCAAGCAGTGTTGCCCTACCTGGTCGACAGTCATCTTCATTTCTTTCATTGCCTGCCCCAACGACATACACTCGAGATGATCCGTTTGCTGCATCCTGTAATGTTGTCCCAACTGGAGAGGATCCATTTGCTGCATCCTTAAATGTCCCACCGCCTTCATATGTTCAGATGTCAGATATGTCAAAGAAACAGAACCTTTTAGTGCAAGAGCAGCAGTTTTGGCAGCAGTATCAGAAGGATGGCATGCAGGGGCAACATGGCATCATGAAATTGTATTCTAATTCTTATGGAATGCCTGCTCAAAACTCCTTTGGCGTGCCTCCTTATGGCATGCCACATATGGAAGGATATATGCCAACTTATCGAGCCTATTATTAATCATGATCTTTTATAGCAAACTATTTAGCTGGCTTTCTTAGGCACTGATTCAGAGTCCACTAGTTATGTCGATGGAGTTTGTGGGCATAAGAGAGGAAAAACATACCACAAATCTGGAGTTTTGCAATGCAGAGGAGATGGGCTCAAAGACATCGGATGAAGACTTAAAGAATCAGGCATTTGATTTAGAGGCAGTCAATTACTTGTAAATTCTTGTGAATGGATACAATTTTAATGAATTGCGATTTACCAGACACTCTTGTTTGATTGTCTGAAATGATAATATTTGTGGTATGATTGAGAGAGGTGACAAACGCAAGATCTTTGCAGGCATATGATCAGATTCACACTTTTGCTGCGTCATGTACTTATCTCAGTAAATTATAAACATAAAAACACACTGGAATCAGATTTTATGAAGACATCATCTAGACATAGGGTTTTATGATTCTTGCGTTCTTTAGGAGCAGATTGTGGAATTCTTTTGTGACAGACCGGAAGCCACTGGACAATGGCGTCTCAGGAATATTGTCATCTCTTTCTTTTCAG

Ace file of the UniGene sp_v3.0_unigene1418

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Clathrin assembly protein, putative n=1 Tax=Ricinus communis RepID=B9RP36_RICCO	-	-	0.0	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Sma3	Clathrin assembly protein, putative	-	-	9.41e-07	-

Source	Gene names
Sma3	AT4G32285; At1g03050; At1g05020; At2g25430; At4g02650; At4g32285; B67C16.2; F10M6.80; F10O3.13; F13B15.9; GSVIVT00025947001; GSVIVT00031567001; GSVIVT00032663001; LOC_Os03g16800; Os03g0275500; OsI_10952; OsJ_10324; OsJ_10325; P0016H04.17; PHYPADRAFT_10448

Source	GOs	Term	Type	Identity
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	coated pit	GO:0005905	Cellular Component	-
Sma3	clathrin coat	GO:0030118	Cellular Component	-
Sma3	cytoplasmic vesicle	GO:0031410	Cellular Component	-
Sma3	phospholipid binding	GO:0005543	Molecular Function	-
Sma3	1-phosphatidylinositol binding	GO:0005545	Molecular Function	-
Sma3	clathrin binding	GO:0030276	Molecular Function	-
Sma3	endocytosis	GO:0006897	Biological Process	-
Sma3	clathrin coat assembly	GO:0048268	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ENTH/VHS	IPR008942	-	-
Sma3	ANTH	IPR011417	-	-
Sma3	Epsin-like, N-terminal	IPR013809	-	-
Sma3	Clathrin adaptor, phosphoinositide-binding, GAT-like	IPR014712	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G25430.1	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related chr2:10822716-10824677 FORWARD LENGTH=653	46%
RefSeq	Arabidopsis thaliana	NP_565595.1	putative clathrin assembly protein [Arabidopsis thaliana]	46%
RefSeq	Populus trichocarpa	XP_002324864.1	predicted protein [Populus trichocarpa]	47%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NW76

Fln msg: your sequence is longer than subject: 646 - 351

Fln protein: MAPSKLRKAMGTVKDQTSIGLAKVASTRAPDLDVAIVKATSHDEVPTDEKYVQEILQLTSYSRGYVNACVAGLSKRLGKTHNWVVALKAVGLIHRLLRDGDPSFEHEVLYATRRGARLLNLSDFRDDSHSNAWDYSAFVRTYASYLDECLDCSVAEKKQINGRFNNSNRRMGYNAYEFGSGDYGSNGYNNHRSGYSDYEVREQEETQVDNGQPMAIRDMKTEMIFDKLYRWLRLLEHFIACRPTGPAKSNRLVQTALYPIVRESFQLYGHICDGLAVILDRFFDMEYQDSAKAFEMYLRAAKKVGELASFYNLCRNMGVCRTAEYPEVQMISEQLLRTLEEYLSERSSSRNERPKSPEPEPEKLQSPGPISEEPAEGLNNRKALPAPGHDANNEPEETQKLTKQPEGDLLNVNNATISSKELENKFALALFSGSSQSDATKEWEAFPPSDKGSGKASAWETPLTEKGKAGWELALVESVSNLRKQGGSMAGGFDSLLVEGLYDQAVAHQQHMSHLMAPGSASSVALPGRQSSSFLSLPAPTTYTRDDPFAASCNVVPTGEDPFAASLNVPPPSYVQMSDMSKKQNLLVQEQQFWQQYQKDGMQGQHGIMKLYSNSYGMPAQNSFGVPPYGMPHMEGYMPTYRAYY*

Protein Length: 647

Fln nts: TGCGTGCTTTTGGAGGCGATTTGTTTTTGTGCGGTTTTAAGGAGGCGAAAATTTGTAGGTCTGCTGTTATCCGAGGCGAGAAAGAGCCTTGGAGGTTTGGCCTTGGTTTGGTTTCGTGAAGGTTGCATACATTTTGACCCGATGTACCGTCTGTTTGCCGTGCTCGATCCGTCTGTTTGCCGTTTTCGATCATAGACGCACCAGATTTGAACATTTCGTCTCGTTTTATCGGAGGATGATACTATTTTGACAAGGACTTGAAGGCTATTGGGAGCGACTTCCTTCCTATATGCTATAAGTATGCACAAAGGTTTTGGTCCTGCCCTGCTTTCTATATGAATTGACTTGCAGTTTAAACGAGACCTAAGCTATTATAAGAAACTAGAGACGAAATAATTCAGAAGGCCCTATAAGCAGGAAGCA_-_ATGGCTCCAAGCAAATTGAGAAAAGCTATGGGGACAGTTAAGGATCAGACAAGCATTGGACTAGCAAAAGTGGCAAGCACCAGAGCTCCAGACTTGGATGTTGCAATTGTAAAGGCCACCAGTCATGATGAAGTTCCAACTGATGAAAAATATGTACAGGAAATTTTGCAGCTTACTTCGTATTCAAGGGGCTATGTGAATGCCTGTGTAGCAGGCTTGTCTAAACGCCTTGGCAAAACTCACAACTGGGTAGTGGCACTGAAAGCAGTGGGGCTTATTCATAGGCTGTTGCGGGATGGTGATCCAAGCTTTGAGCATGAAGTGCTTTATGCAACAAGGCGTGGTGCTCGTTTATTAAATTTGTCTGATTTTAGAGATGATTCACATTCCAATGCCTGGGATTACTCTGCCTTTGTACGCACGTATGCTTCATACCTTGACGAGTGCCTTGATTGCTCAGTTGCTGAAAAAAAACAGATTAATGGTAGATTTAACAACAGCAATCGGAGGATGGGATACAATGCCTATGAGTTTGGAAGTGGAGATTATGGGAGCAATGGATACAATAACCACAGATCTGGTTACAGTGATTATGAAGTCCGTGAGCAAGAAGAAACACAGGTTGACAATGGTCAACCTATGGCAATCCGAGATATGAAGACTGAAATGATTTTTGACAAGTTGTACCGTTGGCTGCGGCTTTTGGAACATTTCATTGCCTGCCGCCCTACAGGTCCAGCAAAGAGTAACAGATTGGTTCAAACTGCTCTTTATCCTATTGTAAGGGAGAGCTTTCAGCTTTATGGTCATATCTGTGATGGCTTGGCTGTTATCCTGGATAGATTCTTTGACATGGAGTATCAGGATTCTGCCAAGGCATTTGAGATGTATTTAAGAGCAGCAAAGAAAGTTGGAGAACTGGCATCCTTTTATAACTTGTGCAGAAACATGGGAGTGTGTAGAACCGCAGAATATCCAGAAGTGCAAATGATTTCAGAGCAACTACTTAGGACATTGGAGGAATATTTAAGTGAGAGGTCATCTTCTCGCAATGAAAGGCCTAAGAGTCCTGAACCAGAGCCAGAGAAGTTGCAAAGTCCTGGCCCAATATCAGAAGAACCAGCCGAGGGTTTAAATAACAGAAAAGCGCTTCCAGCTCCTGGACATGATGCAAATAATGAACCTGAGGAAACACAGAAGTTAACAAAACAGCCAGAGGGAGATTTATTAAATGTAAACAATGCGACCATTTCGTCGAAAGAACTAGAGAACAAGTTTGCATTAGCACTCTTTAGTGGTTCTTCACAATCGGATGCTACAAAGGAATGGGAGGCATTTCCACCTTCTGACAAGGGATCAGGGAAGGCCTCTGCATGGGAAACACCATTGACTGAAAAAGGAAAGGCTGGTTGGGAGCTTGCGCTTGTAGAGTCAGTCAGCAATCTTAGAAAACAAGGAGGCTCAATGGCAGGTGGTTTTGATAGCTTGCTCGTGGAGGGCTTGTATGACCAAGCTGTAGCCCATCAGCAGCATATGTCACATCTTATGGCACCTGGAAGTGCAAGCAGTGTTGCCCTACCTGGTCGACAGTCATCTTCATTTCTTTCATTGCCTGCCCCAACGACATACACTCGAGATGATCCGTTTGCTGCATCCTGTAATGTTGTCCCAACTGGAGAGGATCCATTTGCTGCATCCTTAAATGTCCCACCGCCTTCATATGTTCAGATGTCAGATATGTCAAAGAAACAGAACCTTTTAGTGCAAGAGCAGCAGTTTTGGCAGCAGTATCAGAAGGATGGCATGCAGGGGCAACATGGCATCATGAAATTGTATTCTAATTCTTATGGAATGCCTGCTCAAAACTCCTTTGGCGTGCCTCCTTATGGCATGCCACATATGGAAGGATATATGCCAACTTATCGAGCCTATTATTAA___TCATGATCTTTTATAGCAAACTATTTAGCTGGCTTTCTTAGGCACTGATTCAGAGTCCACTAGTTATGTCGATGGAGTTTGTGGGCATAAGAGAGGAAAAACATACCACAAATCTGGAGTTTTGCAATGCAGAGGAGATGGGCTCAAAGACATCGGATGAAGACTTAAAGAATCAGGCATTTGATTTAGAGGCAGTCAATTACTTGTAAATTCTTGTGAATGGATACAATTTTAATGAATTGCGATTTACCAGACACTCTTGTTTGATTGTCTGAAATGATAATATTTGTGGTATGATTGAGAGAGGTGACAAACGCAAGATCTTTGCAGGCATATGATCAGATTCACACTTTTGCTGCGTCATGTACTTATCTCAGTAAATTATAAACATAAAAACACACTGGAATCAGATTTTATGAAGACATCATCTAGACATAGGGTTTTATGATTCTTGCGTTCTTTAGGAGCAGATTGTGGAATTCTTTTGTGACAGACCGGAAGCCACTGGACAATGGCGTCTCAGGAATATTGTCATCTCTTTCTTTTCAG

Fln Alignment:

Contig1418___MAPSKLRKAMGTVKDQTSIGLAKVASTRAPDLDVAIVKATSHDEVPTDEKYVQEILQLTSYSRGYVNACVAGLSKRLGKTHNWVVALKAVGLIHRLLRDGDPSFEHEVLYATRRGARLLNLSDFRDDSHSNAWDYSAFVRTYASYLDECLDCSVAEKKQINGRFNNSNRRM---------------------GYNAYEFXXXXXXXXXXXXHRSGY----SDYE-VREQEETQVDNGQPMAIRDMKTEMIFDKLYRWLRLLEHFIACRPTGPAKSNRLVQTALYPIVRESFQLYGHICDGLAVILDRFFDMEYQDSAKAFEMYLRAAKKVGELASFYNLCRNMGVCRTAEY
A9NW76______________MAPSKLRKALGAVKDQTSISIAKVASNNAPDLDVAIVKATSHDEIPIDEKYVYEILHLTSYSRGYVSACVHSLSKRISKTHNWIVAMKALMLIHRLFQDGDPSFEREVLQGMRRGARLLNLSDFRDDSHSNAWDYSAFVRTYALYLDERLDCSILGKCQFGDRSNKGQRSRAHSDLESSSPSGYEYSDGRYGGSNGYRYSSNNYESSYGGSRSNGYRSSSGDYDGQQKQDEEKGGNSRPVAVRDMKPGMILDMIPHWQRLLERFLASRPTGAAKNNRLVQIALYSIVRESFQLYKDITDGLAILLDGFFDMEYQDCVNSFETYSKAAKQIDELASFYNMCRWQNWLRNNSY

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
235			66	33	0.997452
236	66			33	0.997452
245	66			33	0.997452
246		33		66	0.997452
247		33		66	0.997452
250		33	66		0.997452
252	33	66			0.997452
253	66	33			0.997452
367	66		33		0.997452
391	33		66		1.0
397	75			25	0.996473
398	75			25	0.996473
407	75	25			0.996473
439	50		50		1.0
527	14		85		0.993533
1708		25	75		1.0
1747	12			87	0.992554
1748		12	87		0.992554
1749	12	87			0.992554
1751	87			12	0.992554
1792	85			14	0.993533
2023		12	87		0.992554
2077			57	42	1.0
2105	87	12			0.992554
2124		75		25	1.0
2126	12		87		0.992554
2232	85	14			0.993533
2255	90			10	0.90298
2259		11		88	0.923564
2260			88	11	0.923564
2261	88	11			0.923564
2665	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain