SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1414

Length: 2039 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene1414
GTTGAATATTTTCGGGAGCATTATAATATTTCATTACAGCAAACTCAACTTCCATGCCTCCAGGTTGGAAATCAGCAGAGGCCAAATTACTTGCCAATGGAGGTTTGTAAAATAGTGGCAGGGCAGCGCTATTCAAAGAAGTTAAATGACAGACAAATCAGTGCATTGCTGAGGGTTACATGCCAGCGGCCTCAAGATAGGGAGAATGCCATATTGCAGACAGTATATGAAAATGCATATAATAAGGACCCATATGCAAAAGAATTTGGCATCAAGATCAATGATAAGCTTGCCACTGTAGAAGCACGAATTTTGCCTGCTCCTCGGCTTAAATATCATGATTCTGGCAAGGAGAAGGACTGCCAACCTGAGGAGGGGCAGTGGAACATGCTCAATAAGAAAATGGTAAATGGGGGCAAAGTAAATTACTGGGCTTGTATCAACTTTTCACGTGTTCCAGAGAATCTTGCTGGTAGATTTTGTCAGGAGCTTGCTCAAATGTGCCAGACATCTGGCATGGAATTCAATCCATGTTCTATAGTTCCATTGCAGATGTCACGCCCTGATCAAGTTGAGTCTGCTTTGAAACGCATATACACAGAGGCTAAGAGAAAACTCAAAGAAAAGGAACTGGAACTCCTTATTGCAGTTTTGCCTGCTAATAATGGTTCTTTATATGGAGACCTGAAGAGGATCTGTGAAACAGACCTTGGTATAGTTTCTCAATGCTGTTTAGAAAAGCATGTAAGGAAGATGAGCAAACAATACATGGCAAATGTAGCGTTGACTTTCACTGTTTAGGCCGGATTCCTGACTGGTGTGCTTGTTGATGCTCTTAGAAGGAGAATATCTCTGGTGAGTGATGTACCAACAATAATATTTGGTGCAGATGTAACTCATCCTCATCCTGGAGAAGACACTAGCCCATCCATAGCAGCCGTTGTGGCTTCTCAAGATTGGCCAGAAGTCACAAAATATGTTGGTCTAGTTTCTGCTCAGGCACATCGTCAAGAGATGATTGAAGACCTTTTTAAGGTTGTAAAAGATCCTAAAAGAGGTGATGTTGTTCGAAGCATGATAAGAGATCTTTTGCGTTCCTTCTACACTGCAACAGGTCGGAAACCTATGAGGATCATCTTCTACAGAGATGGTGTAAGTGAGGGGCAGTTTTACCAAGTCCTGCTGGATGAGTTAGAGGCCATACGCAAGGCTTGCATGTCAATTGACAAGGATTATCAGCCTCCTGTGACTTTTATAGTTGTTCAAAAACGTCATCACACACGTTTATTTGCTCATAATCATCGTGACAGGAATAGTGTTGATAAAAGAAGTGGTAACATATTGCCAGGTACTGTTGTTGATTCCACGATTTGTCATCCAACCGAGTTTGATTTCTACCTTTGCAGTCATTCTGGTATTCAGGGAACAAGCAGGCCAGCTCATTATCATGTTCTGTGGGATGATAATAGATTCAGTGCAGATGCTTTGCAGTCTTTGACAAATAATCTCTGTTACACATATGCTCGGTGTACTCGCTCCATTTCAATCGTTCCTCCAGCATATTATGCGCATCTGGCTGCATTTCGAGCTCGCTTCTACATAGAGCCAGAAACATCGGACTGCGGATCTTTACATGGTGGACTTCGTGGTAGTAGCGTTGGTCCTAGTAGTTTGGGTACCCGCAGCACGCGTCCTGGGACTGGAGCTGCTGCTGTTTGGCCTTTACTAGCTATTAAGGAAAATGTGAAGAGGGTTATGTTCTACTGCTAGTGTATTCTGTGATTCATTTTTCTTCTGGCAGTTTATAGATTGTCGTTTGTATAAAATAAACTTCATTCATCAGACTTCAAAGTACGGGTTTTACATAACTGATCCTTGACTGATAAACAAATCAGAAGCGTGAATATCCTTGGGACTGAGTGCCCTTAAAACTTATTGTTTGATTTTATGTTGTGTTGTCTCCAAATCACAATATCCTGTGAACAGATGATTCGTACAAGAAAGCAGATAATGATATTTTGGCTTTGGTGCTTTTACGA

Ace file of the UniGene sp_v3.0_unigene1414 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Piwi multi-domain protein	-	-	0.0	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Sma3	Argonaute protein group	-	-	6.25e-19	-

Source	Gene names
Sma3	AGO1; AGO1507; AGO2; AGO901; AGO904; AGO905; AGO906; AGO907; AGO909; AGO911; AGO915; At1g48410; At1g69440; At2g27880; At5g43810; CHLREDRAFT_177263; F10D13_11; GSVIVT00000553001; GSVIVT00000886001; GSVIVT00001880001; GSVIVT00005949001; GSVIVT00016822001; G

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	endoribonuclease activity	GO:0004521	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	siRNA binding	GO:0035197	Molecular Function	-
Sma3	miRNA binding	GO:0035198	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	virus induced gene silencing	GO:0009616	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	auxin metabolic process	GO:0009850	Biological Process	-
Sma3	leaf morphogenesis	GO:0009965	Biological Process	-
Sma3	vegetative phase change	GO:0010050	Biological Process	-
Sma3	response to far red light	GO:0010218	Biological Process	-
Sma3	production of ta-siRNAs involved in RNA interference	GO:0010267	Biological Process	-
Sma3	production of lsiRNA involved in RNA interference	GO:0010599	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	RNA interference	GO:0016246	Biological Process	-
Sma3	stem cell maintenance	GO:0019827	Biological Process	-
Sma3	somatic stem cell maintenance	GO:0035019	Biological Process	-
Sma3	gene silencing by miRNA	GO:0035195	Biological Process	-
Sma3	regulation of development, heterochronic	GO:0040034	Biological Process	-
Sma3	leaf development	GO:0048366	Biological Process	-
Sma3	adventitious root development	GO:0048830	Biological Process	-
Sma3	stem cell development	GO:0048864	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Argonaute/Dicer protein, PAZ	IPR003100	-	-
Sma3	Stem cell self-renewal protein Piwi	IPR003165	-	-
Sma3	Domain of unknown function DUF221	IPR003864	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Domain of unknown function DUF1785	IPR014811	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G48410.2	-	73%
RefSeq	Arabidopsis thaliana	NP_175274.1	protein argonaute [Arabidopsis thaliana]	73%
RefSeq	Populus trichocarpa	XP_002329692.1	argonaute protein group [Populus trichocarpa]	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACK3

Fln msg:

Fln protein: MIEDLFKVVKDPKRGDVVRSMIRDLLRSFYTATGRKPMRIIFYRDGVSEGQFYQVLLDELEAIRKACMSIDKDYQPPVTFIVVQKRHHTRLFAHNHRDRNSVDKRSGNILPGTVVDSTICHPTEFDFYLCSHSGIQGTSRPAHYHVLWDDNRFSADALQSLTNNLCYTYARCTRSISIVPPAYYAHLAAFRARFYIEPETSDCGSLHGGLRGSSVGPSSLGTRSTRPGTGAAAVWPLLAIKENVKRVMFYC*

Protein Length: 253

Fln nts: GTTGAATATTTTCGGGAGCATTATAATATTTCATTACAGCAAACTCAACTTCCATGCCTCCAGGTTGGAAATCAGCAGAGGCCAAATTACTTGCCAATGGAGGTTTGTAAAATAGTGGCAGGGCAGCGCTATTCAAAGAAGTTAAATGACAGACAAATCAGTGCATTGCTGAGGGTTACATGCCAGCGGCCTCAAGATAGGGAGAATGCCATATTGCAGACAGTATATGAAAATGCATATAATAAGGACCCATATGCAAAAGAATTTGGCATCAAGATCAATGATAAGCTTGCCACTGTAGAAGCACGAATTTTGCCTGCTCCTCGGCTTAAATATCATGATTCTGGCAAGGAGAAGGACTGCCAACCTGAGGAGGGGCAGTGGAACATGCTCAATAAGAAAATGGTAAATGGGGGCAAAGTAAATTACTGGGCTTGTATCAACTTTTCACGTGTTCCAGAGAATCTTGCTGGTAGATTTTGTCAGGAGCTTGCTCAAATGTGCCAGACATCTGGCATGGAATTCAATCCATGTTCTATAGTTCCATTGCAGATGTCACGCCCTGATCAAGTTGAGTCTGCTTTGAAACGCATATACACAGAGGCTAAGAGAAAACTCAAAGAAAAGGAACTGGAACTCCTTATTGCAGTTTTGCCTGCTAATAATGGTTCTTTATATGGAGACCTGAAGAGGATCTGTGAAACAGACCTTGGTATAGTTTCTCAATGCTGTTTAGAAAAGCATGTAAGGAAGATGAGCAAACAATACATGGCAAATGTAGCGTTGACTTTCACTGTTTAGGCCGGATTCCTGACTGGTGTGCTTGTTGATGCTCTTAGAAGGAGAATATCTCTGGTGAGTGATGTACCAACAATAATATTTGGTGCAGATGTAACTCATCCTCATCCTGGAGAAGACACTAGCCCATCCATAGCAGCCGTTGTGGCTTCTCAAGATTGGCCAGAAGTCACAAAATATGTTGGTCTAGTTTCTGCTCAGGCACATCGTCAAGAG_-_ATGATTGAAGACCTTTTTAAGGTTGTAAAAGATCCTAAAAGAGGTGATGTTGTTCGAAGCATGATAAGAGATCTTTTGCGTTCCTTCTACACTGCAACAGGTCGGAAACCTATGAGGATCATCTTCTACAGAGATGGTGTAAGTGAGGGGCAGTTTTACCAAGTCCTGCTGGATGAGTTAGAGGCCATACGCAAGGCTTGCATGTCAATTGACAAGGATTATCAGCCTCCTGTGACTTTTATAGTTGTTCAAAAACGTCATCACACACGTTTATTTGCTCATAATCATCGTGACAGGAATAGTGTTGATAAAAGAAGTGGTAACATATTGCCAGGTACTGTTGTTGATTCCACGATTTGTCATCCAACCGAGTTTGATTTCTACCTTTGCAGTCATTCTGGTATTCAGGGAACAAGCAGGCCAGCTCATTATCATGTTCTGTGGGATGATAATAGATTCAGTGCAGATGCTTTGCAGTCTTTGACAAATAATCTCTGTTACACATATGCTCGGTGTACTCGCTCCATTTCAATCGTTCCTCCAGCATATTATGCGCATCTGGCTGCATTTCGAGCTCGCTTCTACATAGAGCCAGAAACATCGGACTGCGGATCTTTACATGGTGGACTTCGTGGTAGTAGCGTTGGTCCTAGTAGTTTGGGTACCCGCAGCACGCGTCCTGGGACTGGAGCTGCTGCTGTTTGGCCTTTACTAGCTATTAAGGAAAATGTGAAGAGGGTTATGTTCTACTGCTAG___TGTATTCTGTGATTCATTTTTCTTCTGGCAGTTTATAGATTGTCGTTTGTATAAAATAAACTTCATTCATCAGACTTCAAAGTACGGGTTTTACATAACTGATCCTTGACTGATAAACAAATCAGAAGCGTGAATATCCTTGGGACTGAGTGCCCTTAAAACTTATTGTTTGATTTTATGTTGTGTTGTCTCCAAATCACAATATCCTGTGAACAGATGATTCGTACAAGAAAGCAGATAATGATATTTTGGCTTTGGTGCTTTTACGA

Fln Alignment:

Contig1414___MIRDLLRSFYTATGRKPMRIIFYRDGVSEGQFYQVLLDELEAIRKACMSIDKDYQPPVTFIVVQKRHHTRLFAHNHRDRNSVDKRSGNILPGTVVDSTICHPTEFDFYLCSHSGIQGTSRPAHYHVLWDDNRFSADALQSLTNNLCYTYARCTRSISIVPPAYYAHLAAFRARFYIEPETSDCGSLHGGLRGSSVGPSSLGTRSTRPGTGAAAVWPLLAIKENVKRVMFYC
D5ACK3______________MIKELLISFRRNTGHKPERIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHQDRNATD-RSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSLSSGVPGSRMTAASSGSRSTRVPAG-TTVRPLPALKENVKRVMFYC

SNPs (tot: 53)

Position	A %	C %	G %	T %	Probability
248			85	14	0.993533
249	57		28		1.0
251	85			14	0.993533
288		14		85	0.993533
313	12		87		0.992554
323	12		87		0.992554
367	10		90		0.90298
375	10		90		0.90298
382	10		90		0.90298
394		90	10		0.90298
404		10		90	0.90298
418		10		90	0.90298
419	10			90	0.90298
440		22		77	0.999999
448		88		11	0.923564
465		88	11		0.923564
492	11		88		0.923564
500		11		88	0.923564
553	90	10			0.90298
554	90	10			0.90298
556	10		90		0.90298
557		90		10	0.90298
591	85	14			0.993533
592		12		87	0.992554
593		12	75	12	0.975346
594	87			12	0.992554
595			12	87	0.992554
597	85		14		0.993533
604	14		71	14	0.984337
610	16	83			0.994512
611	16			83	0.994512
612			16	83	0.994512
617	16	83			0.994512
622	83	16			0.994512
623			16	83	0.994512
629	20	80			0.995493
635		20		80	0.995493
672		20		80	0.995493
800	10		90		0.90298
801	10	90			0.90298
804	90			10	0.90298
828	90	10			0.90298
832		90		10	0.90298
956	12	87			0.992554
957		12		87	0.992554
958	22	77			0.999999
959	12			87	0.992554
961	85		14		0.993533
981	85	14			0.993533
1171	33			66	0.997452
1172		33	66		0.997452
1173	33		66		0.997452
1175	66			33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain