SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1406

Length: 2435 nt

UniGene Fasta

>sp_v3.0_unigene1406
CATTAATGGATGATGCACTCAAGAAAAGATCTGCACATGCCTTCCACCCATTTGGCAATATTGGATAGCAATCAGATCACAATCCACAGATTAAGCAGCTGACCACCACATTCTGATCAATTCATTTCTTTGAGAAACACCGTCCTTACGCCATAACCCAGCAATACGTGAAGCGTTAGAATTTAGCATCTACCCAACAATACGTGAAGCGTTTGAATTTTGCATCTACCCAACACCTATATAGAATTACCCACTTGAGCCTGTTAGGCCAGCGCTCACTGGGTAATTACTACTGCAATCTTTTTGCACAGGAACCATTTTGACCTGAGTGGGATAAAATCTCTTGGCAATTCTCAAGTAAAGGCCAGACAAGAATGCGTTGAGAATCGAAGCTCTTGGATGATTGCTGCTGCATTCAATTTATTTTTCCTTCTACAGCAAGTATTTGATCTGAGTGGGATCAAAACACCTATGGAATCTCACGTAGACTCTATACAATAATGTGCTGAGAATCGAATCCAGGCTAGTTGTTATAAACTCTCACCACTAGTCTACTATTGGATCACAGCCCAATCGCAGCAGACTCGTCACTACGAAGCAAAGCTGCAATCTACCTCATAATCATATGTTCCATTCAGGTATATACAAACTTGGAAATTATGTCAGTAGGAAACTGATTGTGAGAGTTTTTTCAAACAAAAATAAACTACCTTGAGCTGTTTGTAGCAAGATATTGCAATCCCTGGACTTCAAGAAAAGGTCTAATCAGCTGCAATTTGGAAGCTGCTGTTTGTGGTGGTGGGAAATCTGATCCAAAGGACACTGAAAAGGCACGGAAACAAACGTCCAGTAGTCTGTGTAATAGACTTCAACTTTCAACTTGTCTTGATTTTGTTGAGAATATACTGGGAAGCAATTTGTGCGGGATTCATACATGGCCCTCTATAGTGTAATAGGATTCCTATTAGGTTTGCTCTTGTGCTTGGAAATCAACACTGTAACATGTAAAGGGAATGTAATATCCGGAACCACCGATGGATCTGAAAAGTGGGGTTATATTGAAGTCAGACCACAAGCCCATATGTTTTGGTGGCTCTACTACAGACCAGGACAAACAGCTGATAATTGGCCTCTTATTTTATGGTTGCAAGGAGGGCCGGGAGCTTCGGGGGTTGGAATTGGAAATTTTCAAGAAGTAGGCCCCTTGGACACAGACTTGAAGCCTCGAAACACAACATGGTTGCAAAAGGCAGACTTGTTATTTGTGGATAGCCCTGTTGGTACAGGGTTTAGCTATGTAGAAAACAGTTCATTGGCAGCAACAACAGATGCGGAAGTAACCACTGACTTGTTAAGCTTTTTAAAAGATTTATTTGGTACAAACAGTACTCTGCAAAAGAGGCCTCTATTTATTGTAGGCGAATCATATGGAGGAAAACATGCCAGTATGATAGGCCTTGCTTTAAGTAAAGCAATTGCTGCAGGAGAGATGAAAGCTAATCTTGGAGGAGTTCTATTGGGAGACAGCTGGATTTCACCCGTAGATTATGTGTTTTCATGGGGACCTTTACTCGTTGATGTGTCACGATTGGAGGCTGATGACAAGGATGGCGCCAACAGCATTGCTTTGCAAATAGAGCAACAGGTTAAAAGTGGAGACTTTATACAGGCAACAGATTCTTGGTCCCAGCTGGAGTCGTTGATTGGCTCAAATAGCAATAATGTGGACTTCTACAATTTTCTACTTGATTCAAGTGCTGACCCTCTATCTTCCGCAACATCCACACTGCAAAGTATGGCTATCGGCACTCCTGGACATTACTCACAATATCTGAGCTCTAAGAAGAATAAAAAGGAAAATGGAGGTTTTGACTTAGACAATTTCATGAATGGAGTGATTCGTGAAAAGCTTAAGGTCATTCCATCAAACAAAACATGGGGTGATCAATCAAGTCTTGTTTTCCAAAAACTAGAAAGTGACTTCATGAAGAGTGCAGTAGATCAGGTCGATGAGCTGCTATCTCGAGGTGAAAGTGTTACAATTTACAACGGCCAGGTTGACTTGATCTGCGCAACCATAGGAACAGAAGCCTGGGTTCAAAAATTGAAATGGCAGAGTTTGCAAGAATTCAATTCAATTAAGCGCACTCCGCTCTACTGCGACGGATCGGAAACAAAGGGATTTGTAAAGTCATACAAGAACCTGCGATTCTTCTGGGTTCTAGGCGCAGGGCATTTCGTACCTGCAGATCAGCCCTGTATCGCCCTGAACATGCTTGAATTGGTTATCAATTCTACATCTTTTGATCTTGCCCACTAAATTCATATTCTATGCGTGAAGCATATATAATAAACATTTTTTTCTGTAACAATTTGTATTCTTCTGGACAAACACGGGCCAACCTTACATTGAGGCTAATAAATGTTTAATAAAT

Ace file of the UniGene sp_v3.0_unigene1406

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	serine carboxypeptidase-like 51 [Arabidopsis thaliana] sp\|Q67Y83.2\|SCP51_ARATH RecName: Full=Serine carboxypeptidase-like 51; Flags: Precursor gb\|AAL06502.1\|AF412049_1 At2g27920/T1E2.16 [Arabidopsis thaliana] gb\|AAD21510.2\| putative carboxypeptidase [Arab	-	-	0.0	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Sma3	Retinoid-inducible serine carboxypeptidase, putative	-	-	2.235e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3	Carboxypeptidase D.	EC:3.4.16.6	-	1.827e-09	-

Source	Gene names
Sma3	At2g27920; GSVIVT00000567001; GSVIVT00000568001; GSVIVT00022132001; LOC_Os03g27480; LOC_Os03g27590; OSJNBa0065F09.14; OSJNBa0093I13.14; OSJNBa0093I13.3; Os03g0392600; Os03g0393700; Os08g0560500; OsI_01665; OsI_11889; OsI_11895; OsI_30277; OsJ_11128; OsJ_1

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	serine-type carboxypeptidase activity	GO:0004185	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S10, serine carboxypeptidase	IPR001563	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Peptidase S10, serine carboxypeptidase, active site	IPR018202	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G27920.1	SCPL51 serine carboxypeptidase-like 51 chr2:11885777-11889043 REVERSE LENGTH=461	55%
RefSeq	Arabidopsis thaliana	NP_565663.1	serine carboxypeptidase-like 51 [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002313552.1	predicted protein [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NY00

Fln msg: your sequence is longer than subject: 462 - 172

Fln protein: MALYSVIGFLLGLLLCLEINTVTCKGNVISGTTDGSEKWGYIEVRPQAHMFWWLYYRPGQTADNWPLILWLQGGPGASGVGIGNFQEVGPLDTDLKPRNTTWLQKADLLFVDSPVGTGFSYVENSSLAATTDAEVTTDLLSFLKDLFGTNSTLQKRPLFIVGESYGGKHASMIGLALSKAIAAGEMKANLGGVLLGDSWISPVDYVFSWGPLLVDVSRLEADDKDGANSIALQIEQQVKSGDFIQATDSWSQLESLIGSNSNNVDFYNFLLDSSADPLSSATSTLQSMAIGTPGHYSQYLSSKKNKKENGGFDLDNFMNGVIREKLKVIPSNKTWGDQSSLVFQKLESDFMKSAVDQVDELLSRGESVTIYNGQVDLICATIGTEAWVQKLKWQSLQEFNSIKRTPLYCDGSETKGFVKSYKNLRFFWVLGAGHFVPADQPCIALNMLELVINSTSFDLAH*

Protein Length: 463

Fln nts: CATTAATGGATGATGCACTCAAGAAAAGATCTGCACATGCCTTCCACCCATTTGGCAATATTGGATAGCAATCAGATCACAATCCACAGATTAAGCAGCTGACCACCACATTCTGATCAATTCATTTCTTTGAGAAACACCGTCCTTACGCCATAACCCAGCAATACGTGAAGCGTTAGAATTTAGCATCTACCCAACAATACGTGAAGCGTTTGAATTTTGCATCTACCCAACACCTATATAGAATTACCCACTTGAGCCTGTTAGGCCAGCGCTCACTGGGTAATTACTACTGCAATCTTTTTGCACAGGAACCATTTTGACCTGAGTGGGATAAAATCTCTTGGCAATTCTCAAGTAAAGGCCAGACAAGAATGCGTTGAGAATCGAAGCTCTTGGATGATTGCTGCTGCATTCAATTTATTTTTCCTTCTACAGCAAGTATTTGATCTGAGTGGGATCAAAACACCTATGGAATCTCACGTAGACTCTATACAATAATGTGCTGAGAATCGAATCCAGGCTAGTTGTTATAAACTCTCACCACTAGTCTACTATTGGATCACAGCCCAATCGCAGCAGACTCGTCACTACGAAGCAAAGCTGCAATCTACCTCATAATCATATGTTCCATTCAGGTATATACAAACTTGGAAATTATGTCAGTAGGAAACTGATTGTGAGAGTTTTTTCAAACAAAAATAAACTACCTTGAGCTGTTTGTAGCAAGATATTGCAATCCCTGGACTTCAAGAAAAGGTCTAATCAGCTGCAATTTGGAAGCTGCTGTTTGTGGTGGTGGGAAATCTGATCCAAAGGACACTGAAAAGGCACGGAAACAAACGTCCAGTAGTCTGTGTAATAGACTTCAACTTTCAACTTGTCTTGATTTTGTTGAGAATATACTGGGAAGCAATTTGTGCGGGATTCATAC_-_ATGGCCCTCTATAGTGTAATAGGATTCCTATTAGGTTTGCTCTTGTGCTTGGAAATCAACACTGTAACATGTAAAGGGAATGTAATATCCGGAACCACCGATGGATCTGAAAAGTGGGGTTATATTGAAGTCAGACCACAAGCCCATATGTTTTGGTGGCTCTACTACAGACCAGGACAAACAGCTGATAATTGGCCTCTTATTTTATGGTTGCAAGGAGGGCCGGGAGCTTCGGGGGTTGGAATTGGAAATTTTCAAGAAGTAGGCCCCTTGGACACAGACTTGAAGCCTCGAAACACAACATGGTTGCAAAAGGCAGACTTGTTATTTGTGGATAGCCCTGTTGGTACAGGGTTTAGCTATGTAGAAAACAGTTCATTGGCAGCAACAACAGATGCGGAAGTAACCACTGACTTGTTAAGCTTTTTAAAAGATTTATTTGGTACAAACAGTACTCTGCAAAAGAGGCCTCTATTTATTGTAGGCGAATCATATGGAGGAAAACATGCCAGTATGATAGGCCTTGCTTTAAGTAAAGCAATTGCTGCAGGAGAGATGAAAGCTAATCTTGGAGGAGTTCTATTGGGAGACAGCTGGATTTCACCCGTAGATTATGTGTTTTCATGGGGACCTTTACTCGTTGATGTGTCACGATTGGAGGCTGATGACAAGGATGGCGCCAACAGCATTGCTTTGCAAATAGAGCAACAGGTTAAAAGTGGAGACTTTATACAGGCAACAGATTCTTGGTCCCAGCTGGAGTCGTTGATTGGCTCAAATAGCAATAATGTGGACTTCTACAATTTTCTACTTGATTCAAGTGCTGACCCTCTATCTTCCGCAACATCCACACTGCAAAGTATGGCTATCGGCACTCCTGGACATTACTCACAATATCTGAGCTCTAAGAAGAATAAAAAGGAAAATGGAGGTTTTGACTTAGACAATTTCATGAATGGAGTGATTCGTGAAAAGCTTAAGGTCATTCCATCAAACAAAACATGGGGTGATCAATCAAGTCTTGTTTTCCAAAAACTAGAAAGTGACTTCATGAAGAGTGCAGTAGATCAGGTCGATGAGCTGCTATCTCGAGGTGAAAGTGTTACAATTTACAACGGCCAGGTTGACTTGATCTGCGCAACCATAGGAACAGAAGCCTGGGTTCAAAAATTGAAATGGCAGAGTTTGCAAGAATTCAATTCAATTAAGCGCACTCCGCTCTACTGCGACGGATCGGAAACAAAGGGATTTGTAAAGTCATACAAGAACCTGCGATTCTTCTGGGTTCTAGGCGCAGGGCATTTCGTACCTGCAGATCAGCCCTGTATCGCCCTGAACATGCTTGAATTGGTTATCAATTCTACATCTTTTGATCTTGCCCACTAA___ATTCATATTCTATGCGTGAAGCATATATAATAAACATTTTTTTCTGTAACAATTTGTATTCTTCTGGACAAACACGGGCCAACCTTACATTGAGGCTAATAAATGTTTAATAAAT

Fln Alignment:

Contig1406___MAIGTPGHYSQYLSSKKNKKENGGFDLDNFMNGVIREKLKVIPSNKTWGDQSSLVFQKLESDFMKSAVDQVDELLSRGESVTIYNGQVDLICATIGTEAWVQKLKWQSLQEFNSIKRTPLYCDGSETKGFVKSYKNLRFFWVLGAGHFVPADQPCIALNMLELVINSTSFD
A9NY00______________MAIGSPGHYSQYLSSEKNKKENRDFDLATFMNGVIREKLKVIPSKKIWNDQSNLVFLELESDFMKSAVDQVDELLSRGESVTIYNGQVDLICATIGTEAWVQKLKWQGLKEFNSIGRTPLYCDGSETKGFVKSYKNLRFFWVLGAGHFVPADQPCVALKMLDLVINSTSFN

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
1198	83		16		0.999991
1488	83		16		0.999991
1509		10	90		0.90298
1560			85	14	0.993533
1638	80	20			0.995493
1665		33		66	0.997452
1946		87	12		0.992554
1947	87		12		0.992554
2090	16		83		0.994512
2117	33		66		1.0
2126	14		85		0.993533
2370		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain