SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1394

Length: 2094 nt

UniGene Fasta

>sp_v3.0_unigene1394
GTTGAGTTCTGCATTTATTACAGACAATGGAGATCCATTGGCAGATGCTGATGCTGCTACTGGTGGCGACTCGAACTCTTGGCATCGTTGACCTGCGGAGGCTAAAGGAAGTCTCTACTTCACCAGCTCAAGCACCCACAGGCGAGGTAAATCTGTCTCGCTCTCAAGACAATCCATTGCTATTTTTTGAGGTCACAAAACCCATTGAGCTTCCCAAGGAGAAGCCATGCTCTGTCCAACTGTTACACCAGGATTTTGGGTTCACGTATGGTCTGCCTCCAGTTTTAGTAGAGTATACGCCACCCCCAAATTGTCAGAAGAAATGGACGAAAGTGGTGATGGAGTGGAAGGCAACGTGTAAGGGGAGGCAGTATGACCGAATTGCAGGCGTGTGGTTGAGTGGAGTGGAGATCCTCCGCACTTGTACAGCAGAACCCACTAAGAATGGGATTGAATGGATCATTCACAAGGATATTACTAAGTTTTCTTCATTGTTAGATAAGCCTCAAATCCTTGAAGTCCAGCTTAATAACGTAGTTGATAAGACTTATACTGGGGTTTATCATGTCAATATAACATTTCATTTTTATGGAGATTATGGGAAAAACGGGTTAGAGAACCCACCGTTTGCAGATCTGATTCTGCCCATTTCGCTTCCTAGTTCTCAGATTGGGGGGTCCTGGTTTCAGATAGAAAATGCGTCTGATGTGCAGTCGAAGTCGTTGCAACTACCGCCTAACGCTTACAAGGCAGTTTTGGAGATTTTTGTTTCATTCCATCAAGATGATGAGTTCTGGTACTCCAATCCCCCCAATGTGTATATTGAGGCAAATAATTTGACTGGTACAGCTGGTAATGGGCCTTTCAGGGAAGTGGTGGCCTTTATCGATGGGATCCTTATAGCTGCTGTGTGGCCTTTTCCTGTGGTTTATACAGGAGGGATCAATCCACTATTCTGGCGTCCTGTTACTGGTATTGGGTCATTTGATCTGCCCAGCTATGAGATTGAGGTTACGCCCTTTTTGGGGAAACTGTTGGATGGAAAAGAGCACACATTCGGTTTCCGCGTGACCGATGCTCTGGATGTTTGGTTTGTAGATGCGAATTTGCACCTGTGGCTTGATGAGAACTCTAGCAGTGCAATCAGAGGGCAATTGATTGGACACGAGGAGCCAAATTTGGAGTTTTCTCTTGTGTCAGACTTCGAAGGGTTGGATGGATCATTTCGCACATCTGCGAATAGGAGAATCTTTTCCTCTGGTTGGGTAGAATCCTCTCATGGAAAGCTCACTACTCATACTTCGCAAGAGTTCAAGTATGATAATTTAATGACTTTTAAAAGAAATGGAGATGTACAGATTGTGCAGCAAACAATAGCAACCAATAGGAAGGTTATTGTAGAGGCAGCCACAGGAATAGTATTATCCTCTAAAGTTGATGCCTTTTTCCCCTTATATTTGAATTCTGCAGATGTGAACGAAGGAAATGACACTTCTATGGCGATAGCAAATATTTCAAATGCATTTAATAAAGATGTATCTATTGTTGTCCCTACTGGTAGCTTCTTCAGCTCTCTGAATAATACTCAAAATGCGGGGGGTTATATGATCATCAAGAACAACCTAGTTCAAAGTGGGTTAGGAAGCACTCATGAGGTGTACATTTATCAAAGCACTGAAGATTGCTATTCCAGGGAAGTTAGTGTAAGCAACTATACATTTCTTTCAGACTCAACAGACACTTTCTGTGGCAACACTCAGTTTGACCTCTATCTCTTTAGTTAGAGAGTGGTTTTTGATATGATGTTGTATAAAATATGTAATATTGTTTGATGAATAGATGAGGCACACTCAGTTTGGTCGGAAACGATGTCTTCTGTTCTGTTAGTTAACATGGTATAAAAGCCAGTATGTGCTTGATTCTCTCACGAGAGAAGGCTGTGATCATGGCTTTTCATGATTGTAGATTTTGGGAGGTGTGGTAGGCCTAGAAACTTTAAGTTTTCTGTATATTTTGGTAGAGTTCATCAAGAAATTGAATAAACCATGTACTTGAAAGACATGCTGCTAGATTGACAATTATAATGGTTAGGTA

Ace file of the UniGene sp_v3.0_unigene1394

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A; Short=PNGase A; AltName: Full=Glycopeptide N-glycosidase; AltName: Full=N-glycanase; Contains: RecName: Full=Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A light chain	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Sma3	Putative uncharacterized protein	-	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G14920.1	Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein chr3:5018275-5020104 FORWARD LENGTH=609	50%
RefSeq	Arabidopsis thaliana	NP_188110.1	Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein [Arabidopsis thaliana]	50%
RefSeq	Populus trichocarpa	XP_002316856.1	predicted protein [Populus trichocarpa]	51%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NX28

Fln msg:

Fln protein: MEIHWQMLMLLLVATRTLGIVDLRRLKEVSTSPAQAPTGEVNLSRSQDNPLLFFEVTKPIELPKEKPCSVQLLHQDFGFTYGLPPVLVEYTPPPNCQKKWTKVVMEWKATCKGRQYDRIAGVWLSGVEILRTCTAEPTKNGIEWIIHKDITKFSSLLDKPQILEVQLNNVVDKTYTGVYHVNITFHFYGDYGKNGLENPPFADLILPISLPSSQIGGSWFQIENASDVQSKSLQLPPNAYKAVLEIFVSFHQDDEFWYSNPPNVYIEANNLTGTAGNGPFREVVAFIDGILIAAVWPFPVVYTGGINPLFWRPVTGIGSFDLPSYEIEVTPFLGKLLDGKEHTFGFRVTDALDVWFVDANLHLWLDENSSSAIRGQLIGHEEPNLEFSLVSDFEGLDGSFRTSANRRIFSSGWVESSHGKLTTHTSQEFKYDNLMTFKRNGDVQIVQQTIATNRKVIVEAATGIVLSSKVDAFFPLYLNSADVNEGNDTSMAIANISNAFNKDVSIVVPTGSFFSSLNNTQNAGGYMIIKNNLVQSGLGSTHEVYIYQSTEDCYSREVSVSNYTFLSDSTDTFCGNTQFDLYLFS*

Protein Length: 587

Fln nts: GTTGAGTTCTGCATTTATTACAGACA_-_ATGGAGATCCATTGGCAGATGCTGATGCTGCTACTGGTGGCGACTCGAACTCTTGGCATCGTTGACCTGCGGAGGCTAAAGGAAGTCTCTACTTCACCAGCTCAAGCACCCACAGGCGAGGTAAATCTGTCTCGCTCTCAAGACAATCCATTGCTATTTTTTGAGGTCACAAAACCCATTGAGCTTCCCAAGGAGAAGCCATGCTCTGTCCAACTGTTACACCAGGATTTTGGGTTCACGTATGGTCTGCCTCCAGTTTTAGTAGAGTATACGCCACCCCCAAATTGTCAGAAGAAATGGACGAAAGTGGTGATGGAGTGGAAGGCAACGTGTAAGGGGAGGCAGTATGACCGAATTGCAGGCGTGTGGTTGAGTGGAGTGGAGATCCTCCGCACTTGTACAGCAGAACCCACTAAGAATGGGATTGAATGGATCATTCACAAGGATATTACTAAGTTTTCTTCATTGTTAGATAAGCCTCAAATCCTTGAAGTCCAGCTTAATAACGTAGTTGATAAGACTTATACTGGGGTTTATCATGTCAATATAACATTTCATTTTTATGGAGATTATGGGAAAAACGGGTTAGAGAACCCACCGTTTGCAGATCTGATTCTGCCCATTTCGCTTCCTAGTTCTCAGATTGGGGGGTCCTGGTTTCAGATAGAAAATGCGTCTGATGTGCAGTCGAAGTCGTTGCAACTACCGCCTAACGCTTACAAGGCAGTTTTGGAGATTTTTGTTTCATTCCATCAAGATGATGAGTTCTGGTACTCCAATCCCCCCAATGTGTATATTGAGGCAAATAATTTGACTGGTACAGCTGGTAATGGGCCTTTCAGGGAAGTGGTGGCCTTTATCGATGGGATCCTTATAGCTGCTGTGTGGCCTTTTCCTGTGGTTTATACAGGAGGGATCAATCCACTATTCTGGCGTCCTGTTACTGGTATTGGGTCATTTGATCTGCCCAGCTATGAGATTGAGGTTACGCCCTTTTTGGGGAAACTGTTGGATGGAAAAGAGCACACATTCGGTTTCCGCGTGACCGATGCTCTGGATGTTTGGTTTGTAGATGCGAATTTGCACCTGTGGCTTGATGAGAACTCTAGCAGTGCAATCAGAGGGCAATTGATTGGACACGAGGAGCCAAATTTGGAGTTTTCTCTTGTGTCAGACTTCGAAGGGTTGGATGGATCATTTCGCACATCTGCGAATAGGAGAATCTTTTCCTCTGGTTGGGTAGAATCCTCTCATGGAAAGCTCACTACTCATACTTCGCAAGAGTTCAAGTATGATAATTTAATGACTTTTAAAAGAAATGGAGATGTACAGATTGTGCAGCAAACAATAGCAACCAATAGGAAGGTTATTGTAGAGGCAGCCACAGGAATAGTATTATCCTCTAAAGTTGATGCCTTTTTCCCCTTATATTTGAATTCTGCAGATGTGAACGAAGGAAATGACACTTCTATGGCGATAGCAAATATTTCAAATGCATTTAATAAAGATGTATCTATTGTTGTCCCTACTGGTAGCTTCTTCAGCTCTCTGAATAATACTCAAAATGCGGGGGGTTATATGATCATCAAGAACAACCTAGTTCAAAGTGGGTTAGGAAGCACTCATGAGGTGTACATTTATCAAAGCACTGAAGATTGCTATTCCAGGGAAGTTAGTGTAAGCAACTATACATTTCTTTCAGACTCAACAGACACTTTCTGTGGCAACACTCAGTTTGACCTCTATCTCTTTAGTTAG___AGAGTGGTTTTTGATATGATGTTGTATAAAATATGTAATATTGTTTGATGAATAGATGAGGCACACTCAGTTTGGTCGGAAACGATGTCTTCTGTTCTGTTAGTTAACATGGTATAAAAGCCAGTATGTGCTTGATTCTCTCACGAGAGAAGGCTGTGATCATGGCTTTTCATGATTGTAGATTTTGGGAGGTGTGGTAGGCCTAGAAACTTTAAGTTTTCTGTATATTTTGGTAGAGTTCATCAAGAAATTGAATAAACCATGTACTTGAAAGACATGCTGCTAGATTGACAATTATAATGGTTAGGTA

Fln Alignment:

Contig1394___MEIHWQMLMLLLVATRTLGIVDLRRLKEVSTSPAQAPTGEVNLSRSQDNPLLFFEVTKPIELPKEKPCSVQLLHQDFGFTYGLPPVLVEYTPPPNCQKKWTKVVMEWKATCKGRQYDRIAGVWLSGVEILRTCTAEPTKNGIEWIIHKDITKFSSLLDKPQILEVQLNNVVDKTYTGVYHVNITFHFYGDYGKNGLENPPFADLILPISLPSSQIGGSWFQIENASDVQSKSLQLPPNAYKAVLEIFVSFHQDDEFWYSNPPNVYIEANNLTGTAGNGPFREVVAFIDGILIAAVWPFPVVYTGGINPLFWRPVTGIGSFDLPSYEIEVTPFLGKLLDGKEHTFGFRVTDALDVWFVDANLHLWLDENSSSAIRGQLIGHEEPNLEFSLVSDFEGLDGSFRTSANRRIFSSGWVESSHGKLTTHTSQEFKYDNLMTFKRNGDVQIVQQTIATNRKVIVEAATGIVLSSKVDAFFPLYLNSADVNEGNDTSMAIANISNAFNKDVSIVVPTGSFFSSLNNTQNAGGYMIIKNNLVQSGLGSTHEVYIYQSTEDCYSREVSVSNYTFLSDSTDTFCGNT
A9NX28______________MKIHWQMLVIILVATRTLAIVDLRRQKEVSTSSGRVPTDEVNLSRSQDNPMLFFEVTKPIKLPKEKPCSVQLLHHDFGYTYHKAPVLVEYRPPPNCQKNWTKVVMEWKATCKGRQYDRIAGVWLSGVEILRTCTAEPTAKGIEWIILKDITKYSSLLDKPQILEVKLNNVVDQTYTGVFHVNITFHFYGDNGKEGLDNPAHAHLILPISLPSSEIGGSWFQIENSSDVQSKSLQLPPNAYRAVLEIFVSFHSDDEFWYSNPPNVYIEENNLTGTAGNGPFREVVAFIDGVLVGAVWPFPVVYTGGINPLFWRPVTGIGSFDLPSYEIEVTPFLGKLLDGKEHTFGLGVTNALYVWFVDANLHLWLDDKSSSAIRGQLIGHEEPSLESSVVSNFKGLDGSFRTSANRRISSSGWVESSHGKLITHTSQEFKYDNLITFKSNADVQIVQQEIATNRKVIVESAKGIVLSSKVDTFFPLYMDAADVDGGNGTDMEIANVSNAFNKDVSIVAPTGSFFSSLNNTQNAGGYMITKNNLVQSGLGSTQEMYNYQSTEGCYSRAVSVSNYTFLSDSTDSFCGYT

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
520	33			66	0.997452
954		83		16	0.994512
1019	20		80		0.995493
1142	33			66	0.997452
1203	33		66		0.997452
1204	66		33		0.997452
1260			33	66	0.997452
1304			25	75	0.996473
1822	44		55		1.0
1866	14		85		0.993533
1872	85		14		0.993533
1940	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain